Lcy01g018520 (gene) Sponge gourd (P93075) v1

Overview
NameLcy01g018520
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr01: 40024540 .. 40024961 (-)
RNA-Seq ExpressionLcy01g018520
SyntenyLcy01g018520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGACACAAGCAAGAAGACCAGTGCATATTTTGGACTCATTCCTTCAAAAAAATACAAGAACTCAGGATCTAAACGTGATTTTGAAATGGAAACCCACCAAGGTGAGAACTTCCACTCTTTAGTCTTTCCCCAGTCTCTTTCTTTCGATTCTGAGCCTAAAGCAATTGATCCTTCTTCATTCAAGCACATCCAGTGCAAACCATGTGATGGTTTTCAAGCCTGAGATCTGAATCATCTGCTACCTTGACATGGGCCTTTCCTCTTCTTTTCTCTTTTTTTGTGTATGATGACATTATTAGTGTAGAAAGGTCCTTTGTCTATGTTGGAATGGGCTTTCTACCTGTAGGGGCAGAGGTGCTTGGCAGAGTCGCAGATGCCTATGGATTCCCTCAGTTTACTCTCTCTCCTTTGGTTTGA

mRNA sequence

ATGGGCGACACAAGCAAGAAGACCAGTGCATATTTTGGACTCATTCCTTCAAAAAAATACAAGAACTCAGGATCTAAACGTGATTTTGAAATGGAAACCCACCAAGGGGCAGAGGTGCTTGGCAGAGTCGCAGATGCCTATGGATTCCCTCAGTTTACTCTCTCTCCTTTGGTTTGA

Coding sequence (CDS)

ATGGGCGACACAAGCAAGAAGACCAGTGCATATTTTGGACTCATTCCTTCAAAAAAATACAAGAACTCAGGATCTAAACGTGATTTTGAAATGGAAACCCACCAAGGGGCAGAGGTGCTTGGCAGAGTCGCAGATGCCTATGGATTCCCTCAGTTTACTCTCTCTCCTTTGGTTTGA

Protein sequence

MGDTSKKTSAYFGLIPSKKYKNSGSKRDFEMETHQGAEVLGRVADAYGFPQFTLSPLV
Homology
[Close]
BLAST of Lcy01g018520 vs. ExPASy TrEMBL
Match: A0A0A0LR42 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354720 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.1e-06
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 0 

Query: 1  MGDTSKKTSAYFGLIPSKKYKNSGSKRDFEMETHQGAEVLGRVADAYGFPQFTLS 56
          MG+ +KKTSAYF   PSK+YKNSGSKRDFEM+THQ       + +++ +P   LS
Sbjct: 1  MGNKNKKTSAYFWTFPSKEYKNSGSKRDFEMKTHQ-------LENSHPYPSLLLS 48

[Close]
BLAST of Lcy01g018520 vs. NCBI nr
Match: KGN62446.1 (hypothetical protein Csa_018581 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 4.3e-06
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 0 

Query: 1  MGDTSKKTSAYFGLIPSKKYKNSGSKRDFEMETHQGAEVLGRVADAYGFPQFTLS 56
          MG+ +KKTSAYF   PSK+YKNSGSKRDFEM+THQ       + +++ +P   LS
Sbjct: 1  MGNKNKKTSAYFWTFPSKEYKNSGSKRDFEMKTHQ-------LENSHPYPSLLLS 48

The following BLAST results are available for this feature:
BLAST of Lcy01g018520 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy01g018520 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LR422.1e-0654.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354720 PE=4 SV=1[more]
BLAST of Lcy01g018520 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62446.14.3e-0654.55hypothetical protein Csa_018581 [Cucumis sativus][more]
BLAST of Lcy01g018520 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy01g018520.1Lcy01g018520.1mRNA