Lcy01g018230 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g018230
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	F-box protein GID2-like
Location	Chr01: 39797678 .. 39798130 (-)
RNA-Seq Expression	Lcy01g018230
Synteny	Lcy01g018230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGCGCCCTCTTTCCCACCAAGATTCCTTCAATCCCATGAAGAAAATCAAGTCAGATTTTCAGGAACAACCACCAGTACCACCAACTGGGTTTGCTAATTTAGACGACGATCTCTTGTTCGAGGTGTTTAAGCACGTCGACGCAAGGACACTGGCCACGGCGGCCGCCGTCAGCAAGCAGTGGTACAAAACGGCGCACGACGAGCGCCTCTGGGAGCTCATCTGCACCAAACACTGGGCCAACATCGGCTGTGCCAACCAACAGCTACGCTCCGTCGTGCTCGCGCTTGGTGGCTTCCGTCGATTGCACTCTCTTTACCCATTTGCGCCGATGATTGGATCGGCGCCCTGTAATCCATGGGGGAAAGACGAGGTTCATCTCTCCCTCTCTCTTCTCTCAATTCGCTACTACGAGAAGATGAAATTCAAAAACAGACCCACTTCTTGA

mRNA sequence

ATGAAGAAGCGCCCTCTTTCCCACCAAGATTCCTTCAATCCCATGAAGAAAATCAAGTCAGATTTTCAGGAACAACCACCAGTACCACCAACTGGGTTTGCTAATTTAGACGACGATCTCTTGTTCGAGGTGTTTAAGCACGTCGACGCAAGGACACTGGCCACGGCGGCCGCCGTCAGCAAGCAGTGGTACAAAACGGCGCACGACGAGCGCCTCTGGGAGCTCATCTGCACCAAACACTGGGCCAACATCGGCTGTGCCAACCAACAGCTACGCTCCGTCGTGCTCGCGCTTGGTGGCTTCCGTCGATTGCACTCTCTTTACCCATTTGCGCCGATGATTGGATCGGCGCCCTGTAATCCATGGGGGAAAGACGAGGTTCATCTCTCCCTCTCTCTTCTCTCAATTCGCTACTACGAGAAGATGAAATTCAAAAACAGACCCACTTCTTGA

Coding sequence (CDS)

ATGAAGAAGCGCCCTCTTTCCCACCAAGATTCCTTCAATCCCATGAAGAAAATCAAGTCAGATTTTCAGGAACAACCACCAGTACCACCAACTGGGTTTGCTAATTTAGACGACGATCTCTTGTTCGAGGTGTTTAAGCACGTCGACGCAAGGACACTGGCCACGGCGGCCGCCGTCAGCAAGCAGTGGTACAAAACGGCGCACGACGAGCGCCTCTGGGAGCTCATCTGCACCAAACACTGGGCCAACATCGGCTGTGCCAACCAACAGCTACGCTCCGTCGTGCTCGCGCTTGGTGGCTTCCGTCGATTGCACTCTCTTTACCCATTTGCGCCGATGATTGGATCGGCGCCCTGTAATCCATGGGGGAAAGACGAGGTTCATCTCTCCCTCTCTCTTCTCTCAATTCGCTACTACGAGAAGATGAAATTCAAAAACAGACCCACTTCTTGA

Protein sequence

MKKRPLSHQDSFNPMKKIKSDFQEQPPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIGSAPCNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

Homology

[Close]

BLAST of Lcy01g018230 vs. ExPASy Swiss-Prot
Match: Q9STX3 (F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 5.9e-42
Identity = 85/133 (63.91%), Postives = 103/133 (77.44%), Query Frame = 0


Query: 16  KKIKSDFQEQPPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWEL 75
           KK+KS  +E+      GF+NLD++L++EV KHVDA+TLA ++ VSK W+KTA DERLWEL
Sbjct: 20  KKMKSTEEEE-----IGFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWEL 79

Query: 76  ICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIGSAPCNPWGKDEVHLSLSLLS 135
           ICT+HW NIGC   QLRSVVLALGGFRRLHSLY + P+    P   +GKDE+ L+LSLLS
Sbjct: 80  ICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLW-PLSKPNPRARFGKDELKLTLSLLS 139

Query: 136 IRYYEKMKFKNRP 149
           IRYYEKM F  RP
Sbjct: 140 IRYYEKMSFTKRP 146

[Close]

BLAST of Lcy01g018230 vs. ExPASy Swiss-Prot
Match: Q7XAK4 (F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-24
Identity = 61/129 (47.29%), Postives = 81/129 (62.79%), Query Frame = 0


Query: 24  EQPPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWAN 83
           EQP VP     +L +DL+FEV +  +ARTLA AA VS+ W + A DERLWE  C + WAN
Sbjct: 69  EQPRVP-----DLGEDLVFEVLRRAEARTLAAAACVSRGWRQLAEDERLWEAACVREWAN 128

Query: 84  IGCANQQLRSVVLALGGFRRLHSLY--PFAPMIGSAPCNP--------WGKDEVHLSLSL 143
           +G + +QLR+VVL+LGGFRRLH++Y  P        P            G+D+V LSLSL
Sbjct: 129 LGFSERQLRAVVLSLGGFRRLHAVYIRPLQWRGAGVPRQQGRRQPPVRLGRDQVQLSLSL 188

[Close]

BLAST of Lcy01g018230 vs. ExPASy Swiss-Prot
Match: Q9LUB6 (F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.9e-12
Identity = 39/113 (34.51%), Postives = 63/113 (55.75%), Query Frame = 0


Query: 30  PTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQ 89
           P    N   D+L E+ + +D  +L +AA V + W   A ++ +WE +C +  +     + 
Sbjct: 24  PVFSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVS--PRPSL 83

Query: 90  QLRSVVLALGGFRRLHSLYPFAPMIGSAPCNPWGKDEVHLSLSLLSIRYYEKM 143
            LRSVV ALGG+R L+ L    P++   P   W +D++ LSLSL  + YYE++
Sbjct: 84  SLRSVVSALGGYRCLYFLC-IRPVLARLPKLLWTRDQLQLSLSLYCVHYYERL 133

[Close]

BLAST of Lcy01g018230 vs. ExPASy TrEMBL
Match: A0A6J1HCI1 (F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111462823 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.3e-60
Identity = 117/138 (84.78%), Postives = 124/138 (89.86%), Query Frame = 0


Query: 15  MKKIKSDFQEQ--PPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERL 74
           MKKIKS  +EQ  PP   + FANLDD+LLFEVFKHVDARTLATAA VSKQW KTAHDE L
Sbjct: 1   MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWCKTAHDEWL 60

Query: 75  WELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIGSAPCNPWGKDEVHLSLS 134
           WEL+CTKHWANIGCANQQLRSVVLALGGFRRLHSLYPF P++GSA C PWGKDE+HLSLS
Sbjct: 61  WELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIMGSASCIPWGKDELHLSLS 120

Query: 135 LLSIRYYEKMKFKNRPTS 151
           LLSIRYYEKMKFKNRPTS
Sbjct: 121 LLSIRYYEKMKFKNRPTS 138

[Close]

BLAST of Lcy01g018230 vs. ExPASy TrEMBL
Match: A0A6J1K7I7 (F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111491869 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 6.5e-60
Identity = 117/138 (84.78%), Postives = 122/138 (88.41%), Query Frame = 0


Query: 15  MKKIKSDFQEQ--PPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERL 74
           MKKIKS  QEQ  PP   + FANLDD+LLFEVFKHVDARTLATA+ VSKQWYKTAHDE L
Sbjct: 1   MKKIKSVSQEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATASGVSKQWYKTAHDEWL 60

Query: 75  WELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIGSAPCNPWGKDEVHLSLS 134
           WEL+CTKHWANIGCAN QLRSVVLALGGFRRLHSLYPF P+IGSA C  WGK EVHLSLS
Sbjct: 61  WELLCTKHWANIGCANPQLRSVVLALGGFRRLHSLYPFPPIIGSASCIAWGKGEVHLSLS 120

Query: 135 LLSIRYYEKMKFKNRPTS 151
           LLSIRYYEKMKFKNRPTS
Sbjct: 121 LLSIRYYEKMKFKNRPTS 138

[Close]

BLAST of Lcy01g018230 vs. ExPASy TrEMBL
Match: A0A5A7V5E1 (F-box protein GID2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00620 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 4.7e-58
Identity = 119/145 (82.07%), Postives = 126/145 (86.90%), Query Frame = 0


Query: 13  NPMKKIKSDF--QEQP----PVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKT 72
           N +KK KSD   QE+P    P P T FANLDD+LLFEVFKHVDARTLATAA V+KQW+KT
Sbjct: 3   NKIKKFKSDSNQQEKPDESQPQPST-FANLDDNLLFEVFKHVDARTLATAAGVNKQWFKT 62

Query: 73  AHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIGSAPCN-PWGKD 132
           AHDERLWEL+CTKHW N+GCANQQLRSVVLALGGFRRLHSLYPF PMIG   CN PWGKD
Sbjct: 63  AHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIG---CNHPWGKD 122

Query: 133 EVHLSLSLLSIRYYEKMKFKNRPTS 151
           EVHLSLSLLSIRYYEKMKFKNRPTS
Sbjct: 123 EVHLSLSLLSIRYYEKMKFKNRPTS 143

[Close]

BLAST of Lcy01g018230 vs. ExPASy TrEMBL
Match: A0A1S3BDV6 (F-box protein GID2-like OS=Cucumis melo OX=3656 GN=LOC103488538 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 4.7e-58
Identity = 119/145 (82.07%), Postives = 126/145 (86.90%), Query Frame = 0


Query: 13  NPMKKIKSDF--QEQP----PVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKT 72
           N +KK KSD   QE+P    P P T FANLDD+LLFEVFKHVDARTLATAA V+KQW+KT
Sbjct: 3   NKIKKFKSDSNQQEKPDESQPQPST-FANLDDNLLFEVFKHVDARTLATAAGVNKQWFKT 62

Query: 73  AHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIGSAPCN-PWGKD 132
           AHDERLWEL+CTKHW N+GCANQQLRSVVLALGGFRRLHSLYPF PMIG   CN PWGKD
Sbjct: 63  AHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIG---CNHPWGKD 122

Query: 133 EVHLSLSLLSIRYYEKMKFKNRPTS 151
           EVHLSLSLLSIRYYEKMKFKNRPTS
Sbjct: 123 EVHLSLSLLSIRYYEKMKFKNRPTS 143

[Close]

BLAST of Lcy01g018230 vs. ExPASy TrEMBL
Match: A0A0A0LR75 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G355020 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.4e-57
Identity = 115/143 (80.42%), Postives = 122/143 (85.31%), Query Frame = 0


Query: 13  NPMKKIKSDFQEQPP----VPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAH 72
           N +KK KS   +Q P      P+ FANLDD+LLFEVFKHVDARTLAT A VSKQW+KTAH
Sbjct: 3   NRIKKFKSVSNQQEPDHSQPQPSTFANLDDNLLFEVFKHVDARTLATVAGVSKQWFKTAH 62

Query: 73  DERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIGSAPCN-PWGKDEV 132
           DERLWEL+CTKHW N+GCANQQLRSVVLALGGFRRLHSLYPF PMIG   CN PWGKDEV
Sbjct: 63  DERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIG---CNHPWGKDEV 122

Query: 133 HLSLSLLSIRYYEKMKFKNRPTS 151
           HLSLSLLSIRYYEKMKFKNRPTS
Sbjct: 123 HLSLSLLSIRYYEKMKFKNRPTS 142

[Close]

BLAST of Lcy01g018230 vs. NCBI nr
Match: XP_023522812.1 (F-box protein GID2-like [Cucurbita pepo subsp. pepo] >XP_023547045.1 F-box protein GID2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.8 bits (634), Expect = 2.9e-62
Identity = 121/139 (87.05%), Postives = 125/139 (89.93%), Query Frame = 0


Query: 15  MKKIKSDFQEQ---PPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDER 74
           MKKIKS  QEQ   PP   + FANLDD+LLFEVFKHVDARTLATAA VSKQWYKTAHDE 
Sbjct: 1   MKKIKSVSQEQQSPPPSSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEW 60

Query: 75  LWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIGSAPCNPWGKDEVHLSL 134
           LWEL+CTKHWANIGCANQQLRSVVLALGGFRRLHSLYPF P+IGSA C PWGKDEVHLSL
Sbjct: 61  LWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPVIGSASCIPWGKDEVHLSL 120

Query: 135 SLLSIRYYEKMKFKNRPTS 151
           SLLSIRYYEKMKFKNRPTS
Sbjct: 121 SLLSIRYYEKMKFKNRPTS 139

[Close]

BLAST of Lcy01g018230 vs. NCBI nr
Match: KAG6598351.1 (F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029322.1 F-box protein GID2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 246.9 bits (629), Expect = 1.1e-61
Identity = 119/138 (86.23%), Postives = 125/138 (90.58%), Query Frame = 0


Query: 15  MKKIKSDFQEQ--PPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERL 74
           MKKIKS  +EQ  PP   + FANLDD+LLFEVFKHVDARTLATAA VSKQWYKTAHDE L
Sbjct: 1   MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWL 60

Query: 75  WELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIGSAPCNPWGKDEVHLSLS 134
           WEL+CTKHWANIGCANQQLRSVVLALGGFRRLHSLYPF P+IGSA C PWGKDE+HLSLS
Sbjct: 61  WELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIIGSASCIPWGKDELHLSLS 120

Query: 135 LLSIRYYEKMKFKNRPTS 151
           LLSIRYYEKMKFKNRPTS
Sbjct: 121 LLSIRYYEKMKFKNRPTS 138

[Close]

BLAST of Lcy01g018230 vs. NCBI nr
Match: XP_022962352.1 (F-box protein GID2-like [Cucurbita moschata])

HSP 1 Score: 242.3 bits (617), Expect = 2.7e-60
Identity = 117/138 (84.78%), Postives = 124/138 (89.86%), Query Frame = 0


Query: 15  MKKIKSDFQEQ--PPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERL 74
           MKKIKS  +EQ  PP   + FANLDD+LLFEVFKHVDARTLATAA VSKQW KTAHDE L
Sbjct: 1   MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWCKTAHDEWL 60

Query: 75  WELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIGSAPCNPWGKDEVHLSLS 134
           WEL+CTKHWANIGCANQQLRSVVLALGGFRRLHSLYPF P++GSA C PWGKDE+HLSLS
Sbjct: 61  WELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIMGSASCIPWGKDELHLSLS 120

Query: 135 LLSIRYYEKMKFKNRPTS 151
           LLSIRYYEKMKFKNRPTS
Sbjct: 121 LLSIRYYEKMKFKNRPTS 138

[Close]

BLAST of Lcy01g018230 vs. NCBI nr
Match: XP_022996700.1 (F-box protein GID2-like [Cucurbita maxima])

HSP 1 Score: 240.0 bits (611), Expect = 1.4e-59
Identity = 117/138 (84.78%), Postives = 122/138 (88.41%), Query Frame = 0


Query: 15  MKKIKSDFQEQ--PPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERL 74
           MKKIKS  QEQ  PP   + FANLDD+LLFEVFKHVDARTLATA+ VSKQWYKTAHDE L
Sbjct: 1   MKKIKSVSQEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATASGVSKQWYKTAHDEWL 60

Query: 75  WELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIGSAPCNPWGKDEVHLSLS 134
           WEL+CTKHWANIGCAN QLRSVVLALGGFRRLHSLYPF P+IGSA C  WGK EVHLSLS
Sbjct: 61  WELLCTKHWANIGCANPQLRSVVLALGGFRRLHSLYPFPPIIGSASCIAWGKGEVHLSLS 120

Query: 135 LLSIRYYEKMKFKNRPTS 151
           LLSIRYYEKMKFKNRPTS
Sbjct: 121 LLSIRYYEKMKFKNRPTS 138

[Close]

BLAST of Lcy01g018230 vs. NCBI nr
Match: XP_008445558.1 (PREDICTED: F-box protein GID2-like [Cucumis melo] >KAA0060929.1 F-box protein GID2-like [Cucumis melo var. makuwa])

HSP 1 Score: 233.8 bits (595), Expect = 9.7e-58
Identity = 119/145 (82.07%), Postives = 126/145 (86.90%), Query Frame = 0


Query: 13  NPMKKIKSDF--QEQP----PVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKT 72
           N +KK KSD   QE+P    P P T FANLDD+LLFEVFKHVDARTLATAA V+KQW+KT
Sbjct: 3   NKIKKFKSDSNQQEKPDESQPQPST-FANLDDNLLFEVFKHVDARTLATAAGVNKQWFKT 62

Query: 73  AHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIGSAPCN-PWGKD 132
           AHDERLWEL+CTKHW N+GCANQQLRSVVLALGGFRRLHSLYPF PMIG   CN PWGKD
Sbjct: 63  AHDERLWELLCTKHWTNLGCANQQLRSVVLALGGFRRLHSLYPFPPMIG---CNHPWGKD 122

Query: 133 EVHLSLSLLSIRYYEKMKFKNRPTS 151
           EVHLSLSLLSIRYYEKMKFKNRPTS
Sbjct: 123 EVHLSLSLLSIRYYEKMKFKNRPTS 143

[Close]

BLAST of Lcy01g018230 vs. TAIR 10
Match: AT4G24210.1 (F-box family protein )

HSP 1 Score: 171.8 bits (434), Expect = 4.2e-43
Identity = 85/133 (63.91%), Postives = 103/133 (77.44%), Query Frame = 0


Query: 16  KKIKSDFQEQPPVPPTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWEL 75
           KK+KS  +E+      GF+NLD++L++EV KHVDA+TLA ++ VSK W+KTA DERLWEL
Sbjct: 20  KKMKSTEEEE-----IGFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWEL 79

Query: 76  ICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIGSAPCNPWGKDEVHLSLSLLS 135
           ICT+HW NIGC   QLRSVVLALGGFRRLHSLY + P+    P   +GKDE+ L+LSLLS
Sbjct: 80  ICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLW-PLSKPNPRARFGKDELKLTLSLLS 139

Query: 136 IRYYEKMKFKNRP 149
           IRYYEKM F  RP
Sbjct: 140 IRYYEKMSFTKRP 146

[Close]

BLAST of Lcy01g018230 vs. TAIR 10
Match: AT5G48170.1 (F-box family protein )

HSP 1 Score: 73.2 bits (178), Expect = 2.0e-13
Identity = 39/113 (34.51%), Postives = 63/113 (55.75%), Query Frame = 0


Query: 30  PTGFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQ 89
           P    N   D+L E+ + +D  +L +AA V + W   A ++ +WE +C +  +     + 
Sbjct: 24  PVFSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVS--PRPSL 83

Query: 90  QLRSVVLALGGFRRLHSLYPFAPMIGSAPCNPWGKDEVHLSLSLLSIRYYEKM 143
            LRSVV ALGG+R L+ L    P++   P   W +D++ LSLSL  + YYE++
Sbjct: 84  SLRSVVSALGGYRCLYFLC-IRPVLARLPKLLWTRDQLQLSLSLYCVHYYERL 133

[Close]

BLAST of Lcy01g018230 vs. TAIR 10
Match: AT1G21760.1 (F-box protein 7 )

HSP 1 Score: 42.0 bits (97), Expect = 5.0e-04
Identity = 23/72 (31.94%), Postives = 30/72 (41.67%), Query Frame = 0


Query: 27  PVPPTGFAN-------------LDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLW 86
           PVPP G  +             L D+LLFEVF  +    L  A+ V ++W  T  +   W
Sbjct: 40  PVPPFGSTSRKPHFDPALIHRCLPDELLFEVFARMMPYDLGRASCVCRKWRYTVRNPMFW 99

The following BLAST results are available for this feature:

BLAST of Lcy01g018230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STX3	5.9e-42	63.91	F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1	[more]
Q7XAK4	1.5e-24	47.29	F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1	[more]
Q9LUB6	2.9e-12	34.51	F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1	[more]

BLAST of Lcy01g018230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HCI1	1.3e-60	84.78	F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111462823 PE=4 SV=1	[more]
A0A6J1K7I7	6.5e-60	84.78	F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111491869 PE=4 SV=1	[more]
A0A5A7V5E1	4.7e-58	82.07	F-box protein GID2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3BDV6	4.7e-58	82.07	F-box protein GID2-like OS=Cucumis melo OX=3656 GN=LOC103488538 PE=4 SV=1	[more]
A0A0A0LR75	1.4e-57	80.42	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G355020 PE=4 ...	[more]

BLAST of Lcy01g018230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023522812.1	2.9e-62	87.05	F-box protein GID2-like [Cucurbita pepo subsp. pepo] >XP_023547045.1 F-box prote...	[more]
KAG6598351.1	1.1e-61	86.23	F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029322....	[more]
XP_022962352.1	2.7e-60	84.78	F-box protein GID2-like [Cucurbita moschata]	[more]
XP_022996700.1	1.4e-59	84.78	F-box protein GID2-like [Cucurbita maxima]	[more]
XP_008445558.1	9.7e-58	82.07	PREDICTED: F-box protein GID2-like [Cucumis melo] >KAA0060929.1 F-box protein GI...	[more]

BLAST of Lcy01g018230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24210.1	4.2e-43	63.91	F-box family protein	[more]
AT5G48170.1	2.0e-13	34.51	F-box family protein	[more]
AT1G21760.1	5.0e-04	31.94	F-box protein 7	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 36..76 e-value: 4.6E-5 score: 32.8
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 38..78 e-value: 4.8E-9 score: 36.0
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 30..76 score: 10.318796
None	No IPR available	GENE3D	1.20.1280.50		coord: 16..123 e-value: 3.7E-12 score: 48.0
None	No IPR available	PANTHER	PTHR12874:SF22	F-BOX PROTEIN GID2-LIKE	coord: 116..145
None	No IPR available	PANTHER	PTHR12874:SF22	F-BOX PROTEIN GID2-LIKE	coord: 23..108
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 23..108
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 116..145
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 25..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g018230.1	Lcy01g018230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding