Lcy01g017930 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g017930
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Chr01: 39379879 .. 39382261 (-)
RNA-Seq Expression	Lcy01g017930
Synteny	Lcy01g017930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCTAATTCATTCAATAGCAATACCAAGCTACAACTTTCCAAAAAAAAAAAAAAAAAAAAACTTACCCAAATATTGGGCTGAATCCACAACTGAACCCATCAACACACAGTCCACAAAAACTCAACCCATCACAAAACACACCAAAAAATAGAGAGAAAAATAAGAAGCAAAGAAAGAGGATAACATAACAAAAGAACAACGGCATTGGCTGATTTCTCCTTCCCAAAGGAGCGATGGCGGTTTCACTTTCAGCGGCCACTGCCAGAGCCTTCCTTCCGCAACCCTCTTCTTCATCTCCCTCCTCCATTCCCGCGCCCTTTTACACTCCCTCATTCAACCCTAAACCCTCCCGCCGCTCAATAATAGCTCAAGCCCAATCTCAGCCTCGCCAAACATGGCTCCCCGGCCTCGACCCTCCCCTGCATCTCGACGGAAGCCTCGCCGGCGATTTTGGATTCGACCCACTTGGCCTCGGCGAAGACCCAGATAGTTTGAAGTGGTACGTCCAAGCAGAGCTCGTTCATTCTCGCTTCGCCATGCTCGGCGTCTCTGGAATTCTTCTCACAGATGTCGGTACCAATCCAACCCCATTTCCAATTTCAATCTTAGCTCTCAATGAGATAGACTGGATTTATGTTTGGGGTTTTTTTTGTTTATCTTCTTTGTGTGTGGCAGTTGCTTCGAGTGACAGGAATCAGTAAATTGCCTGTTTGGTACAATGCGGGTGCTGTGGAATATGGCTTTGCCAACAAAGAAACCCTCTTCATTGTTCAGCTGCTGTTGATGGGGTCCTAATTCTTCCTTATCCTCCATTTCTATTTGTTTGTAACTTCCTGTGTGTGGCTGCCTGTAATTCATTTTTTTGGCTTTTATATGGCTCTGTAGCTTTGTGGAAACCAAAAGATATATGGATTTCAAGAGCCCTGGATCTCAAGCACAAGAAGGAACTTTCTTTGGATTAGAATCCGCTCTCAGGGGTCTCGAGCCCGGGTAATACACATTTCCTCTAATCTTAATGTTTATATCTTAAGTTGTCTCAACCTAAGCATAGCTCCACTATTATATTTTCGACTGTAAGGTTAGAGGTTCGAACCACAGTCGAAAGAAAATTTTTTAGTAGTAGCTTATCTATAAGTTTTTTATATGCCCTTTTAATCATTGGACCAACTAGTAGAGGGAAATCTAAACTTTATATTAAAACTTGGAAAAGGGAATACTTGTTGTTTCCTCTTGAACTTAAACTATGGATTGAACATCCTTGAGGATTGACTTACAGATATCCTGGGGGTCCTCTGCTGAATCCTCTTGGCCTGGCTAAAGATATCAAGAATGCACATGACTGGAAGCTCAAAGAGATTAAGAATGGTTAAGTTTTTCACTCACATTGTAAAATTTTCGTCTTCGTTTTCCCAGACTAATCTTTGTTCGTTCGAATTCCAGGACGGCTGGCGATGGTAGCCATGCTTGGGATCTTTGTGCAAGCTTATGTTACTCATACAGGGCCAATAGATAACCTTGTGGAGCACCTTTCTAATCCATGGCACAAGACTATTATCCAGACCCTCTCGAGCTCAAGTCCTTGAAGAATCAGTTGACAGTCTCCTTGTAAATTCTGAGCTTTGCTCTGTAAACTCCAAGAGAGCCATCAGCCATATAAAATGGCATTGAAGAGAATATGTGAGCTAAAAAGGGTACATATGAAAGAACAAATGACCTTGTAATTTGATTTCATGAATACAAGACAGACTTTTCCCCAAGAACGGTACTTGGTTTCACACTGTTCTTATTTTTGTCCTTGCTGTTACCTAATTCAAATAAGAGATTACTTGAAAGAGCACAATTGACAAAGGTTTCATTGTCTGAATATCTTCTAATAATCGATCAAATTACAGAGATAAAACCACATATTGTTTTACACAAAAAAATACTCATCAAGAATATGGTTCCCAAGAACTCACATTACATGAAGGGTTGGATGGAGTTTGGATCAGATTTTTGGTTTTCTTTGCTATTATTCTATGAAAGGTGGAAGTCTACAAGAGTTCAAAATTGAAGTGCAATTGATGAATATTTGCTAATGGCTGCAAGAATCCTCTCTTTGTCTCTGGTGGGAAATGCTTCTAATAAGACACCATCTTTATAGAAATGGAACAGTGGCACTGTCTGCAACCATCAATTTTCATCATTAGTGAACAAATATGCAAAAACAAAACACAATCTCTTTGTTCCCTATTGGATGATCCTGTCAGTATAGCTTTTTTTTTTTTTTTTTGACAACATGTGAGGGTGACAAGTTCGAACCACAGACCTCTTGATCTGTCGGTATAGCTTTTGAAAGCTCATTTTATTTGTAAAATCGAAAGGGAGTATATGAATGAAGC

mRNA sequence

CTTCTAATTCATTCAATAGCAATACCAAGCTACAACTTTCCAAAAAAAAAAAAAAAAAAAAACTTACCCAAATATTGGGCTGAATCCACAACTGAACCCATCAACACACAGTCCACAAAAACTCAACCCATCACAAAACACACCAAAAAATAGAGAGAAAAATAAGAAGCAAAGAAAGAGGATAACATAACAAAAGAACAACGGCATTGGCTGATTTCTCCTTCCCAAAGGAGCGATGGCGGTTTCACTTTCAGCGGCCACTGCCAGAGCCTTCCTTCCGCAACCCTCTTCTTCATCTCCCTCCTCCATTCCCGCGCCCTTTTACACTCCCTCATTCAACCCTAAACCCTCCCGCCGCTCAATAATAGCTCAAGCCCAATCTCAGCCTCGCCAAACATGGCTCCCCGGCCTCGACCCTCCCCTGCATCTCGACGGAAGCCTCGCCGGCGATTTTGGATTCGACCCACTTGGCCTCGGCGAAGACCCAGATAGTTTGAAGTGGTACGTCCAAGCAGAGCTCGTTCATTCTCGCTTCGCCATGCTCGGCGTCTCTGGAATTCTTCTCACAGATTTGCTTCGAGTGACAGGAATCAGTAAATTGCCTGTTTGGTACAATGCGGGTGCTGTGGAATATGGCTTTGCCAACAAAGAAACCCTCTTCATTGTTCAGCTGCTGTTGATGGGCTTTGTGGAAACCAAAAGATATATGGATTTCAAGAGCCCTGGATCTCAAGCACAAGAAGGAACTTTCTTTGGATTAGAATCCGCTCTCAGGGGTCTCGAGCCCGGATATCCTGGGGGTCCTCTGCTGAATCCTCTTGGCCTGGCTAAAGATATCAAGAATGCACATGACTGGAAGCTCAAAGAGATTAAGAATGGACGGCTGGCGATGGTAGCCATGCTTGGGATCTTTGTGCAAGCTTATGTTACTCATACAGGGCCAATAGATAACCTTGTGGAGCACCTTTCTAATCCATGGCACAAGACTATTATCCAGACCCTCTCGAGCTCAAGTCCTTGAAGAATCAGTTGACAGTCTCCTTGTAAATTCTGAGCTTTGCTCTGTAAACTCCAAGAGAGCCATCAGCCATATAAAATGGCATTGAAGAGAATATGTGAGCTAAAAAGGGTACATATGAAAGAACAAATGACCTTGTAATTTGATTTCATGAATACAAGACAGACTTTTCCCCAAGAACGGTACTTGGTTTCACACTGTTCTTATTTTTGTCCTTGCTGTTACCTAATTCAAATAAGAGATTACTTGAAAGAGCACAATTGACAAAGGTTTCATTGTCTGAATATCTTCTAATAATCGATCAAATTACAGAGATAAAACCACATATTGTTTTACACAAAAAAATACTCATCAAGAATATGGTTCCCAAGAACTCACATTACATGAAGGGTTGGATGGAGTTTGGATCAGATTTTTGGTTTTCTTTGCTATTATTCTATGAAAGGTGGAAGTCTACAAGAGTTCAAAATTGAAGTGCAATTGATGAATATTTGCTAATGGCTGCAAGAATCCTCTCTTTGTCTCTGGTGGGAAATGCTTCTAATAAGACACCATCTTTATAGAAATGGAACAGTGGCACTGTCTGCAACCATCAATTTTCATCATTAGTGAACAAATATGCAAAAACAAAACACAATCTCTTTGTTCCCTATTGGATGATCCTGTCAGTATAGCTTTTTTTTTTTTTTTTTGACAACATGTGAGGGTGACAAGTTCGAACCACAGACCTCTTGATCTGTCGGTATAGCTTTTGAAAGCTCATTTTATTTGTAAAATCGAAAGGGAGTATATGAATGAAGC

Coding sequence (CDS)

ATGGCGGTTTCACTTTCAGCGGCCACTGCCAGAGCCTTCCTTCCGCAACCCTCTTCTTCATCTCCCTCCTCCATTCCCGCGCCCTTTTACACTCCCTCATTCAACCCTAAACCCTCCCGCCGCTCAATAATAGCTCAAGCCCAATCTCAGCCTCGCCAAACATGGCTCCCCGGCCTCGACCCTCCCCTGCATCTCGACGGAAGCCTCGCCGGCGATTTTGGATTCGACCCACTTGGCCTCGGCGAAGACCCAGATAGTTTGAAGTGGTACGTCCAAGCAGAGCTCGTTCATTCTCGCTTCGCCATGCTCGGCGTCTCTGGAATTCTTCTCACAGATTTGCTTCGAGTGACAGGAATCAGTAAATTGCCTGTTTGGTACAATGCGGGTGCTGTGGAATATGGCTTTGCCAACAAAGAAACCCTCTTCATTGTTCAGCTGCTGTTGATGGGCTTTGTGGAAACCAAAAGATATATGGATTTCAAGAGCCCTGGATCTCAAGCACAAGAAGGAACTTTCTTTGGATTAGAATCCGCTCTCAGGGGTCTCGAGCCCGGATATCCTGGGGGTCCTCTGCTGAATCCTCTTGGCCTGGCTAAAGATATCAAGAATGCACATGACTGGAAGCTCAAAGAGATTAAGAATGGACGGCTGGCGATGGTAGCCATGCTTGGGATCTTTGTGCAAGCTTATGTTACTCATACAGGGCCAATAGATAACCTTGTGGAGCACCTTTCTAATCCATGGCACAAGACTATTATCCAGACCCTCTCGAGCTCAAGTCCTTGA

Protein sequence

MAVSLSAATARAFLPQPSSSSPSSIPAPFYTPSFNPKPSRRSIIAQAQSQPRQTWLPGLDPPLHLDGSLAGDFGFDPLGLGEDPDSLKWYVQAELVHSRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESALRGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP

Homology

[Close]

BLAST of Lcy01g017930 vs. ExPASy Swiss-Prot
Match: Q9C639 (Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA5 PE=1 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 7.5e-101
Identity = 173/210 (82.38%), Postives = 192/210 (91.43%), Query Frame = 0


Query: 52  RQTWLPGLDPPLHLDGSLAGDFGFDPLGLGEDPDSLKWYVQAELVHSRFAMLGVSGILLT 111
           R TWLPGL+PP +LDG+LAGD+GFDPLGLGEDP+SLKWYVQAELVHSRFAMLGV+GIL T
Sbjct: 46  RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105

Query: 112 DLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGT 171
           DLLR TGI  LPVWY AGAV++ FA+ +TL +VQ LLMGF ETKRYMDF SPGSQA+EG+
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165

Query: 172 -FFGLESALRGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAY 231
            FFGLE+AL GLEPGYPGGPLLNPLGLAKD++NAHDWKLKEIKNGRLAM+AMLG FVQA 
Sbjct: 166 FFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQAS 225

Query: 232 VTHTGPIDNLVEHLSNPWHKTIIQTLSSSS 261
           VTHTGPIDNLVEHLSNPWHKTIIQTL +S+
Sbjct: 226 VTHTGPIDNLVEHLSNPWHKTIIQTLFTST 255

[Close]

BLAST of Lcy01g017930 vs. ExPASy Swiss-Prot
Match: Q9SQL2 (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.5e-53
Identity = 106/205 (51.71%), Postives = 141/205 (68.78%), Query Frame = 0


Query: 55  WLPGLDPPLHLDGSLAGDFGFDPLGLGEDPDSLKWYVQAELVHSRFAMLGVSGILLTDLL 114
           WLPGL  P +L GSL GD GFDPLGL EDP++L+W+VQAELV+ R+AMLGV+G+LL ++ 
Sbjct: 56  WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVF 115

Query: 115 RVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFG 174
              GI  +P WY AG  EY FA+  TLF+++ +L  +VE +R+ D K+PGS  Q+  F  
Sbjct: 116 TSIGIINVPKWYAAGKEEY-FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIF-- 175

Query: 175 LESALRGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHT 234
            + +L   E GYPGG + NPL  A  +    + K KEI NGRLAM+A LG  +Q  VT  
Sbjct: 176 KQYSLPAGEVGYPGG-IFNPLNFAPTL----EAKEKEIANGRLAMLAFLGFIIQHNVTGK 235

Query: 235 GPIDNLVEHLSNPWHKTIIQTLSSS 260
           GP DNL++H+S+PWH TI+QTL  +
Sbjct: 236 GPFDNLLQHISDPWHNTIVQTLGGN 252

[Close]

BLAST of Lcy01g017930 vs. ExPASy Swiss-Prot
Match: P27521 (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA4 PE=1 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 2.0e-53
Identity = 106/203 (52.22%), Postives = 141/203 (69.46%), Query Frame = 0


Query: 55  WLPGLDPPLHLDGSLAGDFGFDPLGLGEDPDSLKWYVQAELVHSRFAMLGVSGILLTDLL 114
           WLPGL  P +L GSLAGD GFDPLGL EDP++LKW+VQAELV+ R+AMLGV+G+LL ++ 
Sbjct: 57  WLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVF 116

Query: 115 RVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFG 174
              GI  +P WY+AG  +Y FA+  TLF+++ +L  +VE +R+ D K+PGS  Q+  F  
Sbjct: 117 TKIGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF-- 176

Query: 175 LESALRGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHT 234
            + +L   E GYPGG + NPL  A       + K KE+ NGRLAM+A LG  VQ  VT  
Sbjct: 177 KQYSLPKGEVGYPGG-IFNPLNFAP----TQEAKEKELANGRLAMLAFLGFVVQHNVTGK 236

Query: 235 GPIDNLVEHLSNPWHKTIIQTLS 258
           GP +NL++HLS+PWH TI+QT +
Sbjct: 237 GPFENLLQHLSDPWHNTIVQTFN 251

[Close]

BLAST of Lcy01g017930 vs. ExPASy Swiss-Prot
Match: P13869 (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 5.5e-51
Identity = 106/224 (47.32%), Postives = 136/224 (60.71%), Query Frame = 0


Query: 36  PKPSRRSIIAQAQSQP-RQTWLPGLDPPLHLDGSLAGDFGFDPLGLGEDPDSLKWYVQAE 95
           P  SR   ++   + P R  W PG  PP  LDGSL GDFGFDPLGLG DP+SLKW  QAE
Sbjct: 48  PVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAE 107

Query: 96  LVHSRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVET 155
           LVHSR+AMLG +GI + + L   G+   P WY AG  EY F +  TLF+++L+L+G+ E 
Sbjct: 108 LVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEY-FTDTTTLFVIELVLIGWAEG 167

Query: 156 KRYMDFKSPGSQAQEGTFFGLESALRGLEPGYPGGPLLNPLGLAK-DIKNAHDWKLKEIK 215
           +R+ D   PG    +  F    + L G + GYPGG   +PLG          + + KEIK
Sbjct: 168 RRWADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIK 227

Query: 216 NGRLAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLS 258
           NGRLAM+A++G + Q   T TGPIDNL  HL++P H TI    S
Sbjct: 228 NGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268

[Close]

BLAST of Lcy01g017930 vs. ExPASy Swiss-Prot
Match: Q9SYW8 (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA2 PE=1 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 7.1e-51
Identity = 118/255 (46.27%), Postives = 151/255 (59.22%), Query Frame = 0


Query: 1   MAVSLSAATARAFLPQPS--SSSPSSIPAPFYTPSFNPKPSRRSIIAQAQSQPRQTWLPG 60
           MA SL A++A A +  PS        +      P+ + +P   S+ A A    R  W PG
Sbjct: 1   MASSLCASSAIAAISSPSFLGGKKLRLKKKLTVPAVS-RPD-ASVRAVAADPDRPIWFPG 60

Query: 61  LDPPLHLDGSLAGDFGFDPLGLGEDPDSLKWYVQAELVHSRFAMLGVSGILLTDLLRVTG 120
             PP  LDGSL GDFGFDPLGL  DPDSLKW VQAE+VH R+AMLG +GI + + L   G
Sbjct: 61  STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIG 120

Query: 121 ISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESA 180
           I   P WY AG  EY F +K TLF+V+L+L+G+ E +R+ D   PGS   +  F    + 
Sbjct: 121 ILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVF--PNNK 180

Query: 181 LRGLEPGYPGGPLLNPLGLAK-DIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPI 240
           L G + GYPGG   +PLG          + + KEIKNGRLAM+A++G + Q   T TGPI
Sbjct: 181 LTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 240

Query: 241 DNLVEHLSNPWHKTI 253
           DNL  HL++P H TI
Sbjct: 241 DNLFAHLADPGHATI 250

[Close]

BLAST of Lcy01g017930 vs. ExPASy TrEMBL
Match: A0A6J1CSJ3 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111013928 PE=3 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 9.5e-123
Identity = 227/273 (83.15%), Postives = 244/273 (89.38%), Query Frame = 0


Query: 1   MAV-SLSAATARAFLPQPSSS--SPSSIPAPFYTPSFNPKP---------SRRSIIAQAQ 60
           MAV SLSAAT  A   +P SS  SPS+I   F++PSF P+          SRR+I+A+AQ
Sbjct: 1   MAVSSLSAATPLAVQVRPCSSSWSPSAISNTFFSPSFTPRERPHSHSHSHSRRTIVARAQ 60

Query: 61  SQPRQTWLPGLDPPLHLDGSLAGDFGFDPLGLGEDPDSLKWYVQAELVHSRFAMLGVSGI 120
           +QPR+TWLPGLDPP HLDGSLAGDFGFDPLGL EDP+SLKWYVQAEL+HSRFAMLG+SGI
Sbjct: 61  AQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGI 120

Query: 121 LLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ 180
           LLTDLLRVTG+SK+PVWY AGA EYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ
Sbjct: 121 LLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ 180

Query: 181 EGTFFGLESALRGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQ 240
           EGTFFGLE+AL GLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAM+GIFVQ
Sbjct: 181 EGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQ 240

Query: 241 AYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP 262
           AYVTH GPIDNLVEHLSNPWHKTIIQTLSSSSP
Sbjct: 241 AYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP 273

[Close]

BLAST of Lcy01g017930 vs. ExPASy TrEMBL
Match: A0A0A0LRB4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_2G357290 PE=3 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 1.8e-121
Identity = 228/269 (84.76%), Postives = 237/269 (88.10%), Query Frame = 0


Query: 1   MAVSLSAATARAFLPQPSSSSPSSIPAPFYTPSFNP-------KPSRRS-IIAQAQSQPR 60
           MAVS SAATA      PSSSS        YTP FNP        PSRR+ +IA AQS+ R
Sbjct: 1   MAVSFSAATALHL--HPSSSS--------YTPLFNPSQFLRLRSPSRRTLLIAHAQSEHR 60

Query: 61  QTWLPGLDPPLHLDGSLAGDFGFDPLGLGEDPDSLKWYVQAELVHSRFAMLGVSGILLTD 120
           QTWLPGLDPP HLDG+LAGDFGFDPLGLGEDP SLKWYVQAELVH RFAMLGVSG+LLTD
Sbjct: 61  QTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTD 120

Query: 121 LLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTF 180
           LLRVTGIS+LPVWYNAGAVEYGFANK TLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTF
Sbjct: 121 LLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTF 180

Query: 181 FGLESALRGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVT 240
           FGLE+A +GLEPGYPGGPLLNPLG+AKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVT
Sbjct: 181 FGLEAAFKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVT 240

Query: 241 HTGPIDNLVEHLSNPWHKTIIQTLSSSSP 262
           HTGPIDNLVEHLSNPWHKTIIQTLSSSSP
Sbjct: 241 HTGPIDNLVEHLSNPWHKTIIQTLSSSSP 259

[Close]

BLAST of Lcy01g017930 vs. ExPASy TrEMBL
Match: A0A6J1CQX2 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111013928 PE=3 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 5.2e-121
Identity = 227/277 (81.95%), Postives = 244/277 (88.09%), Query Frame = 0


Query: 1   MAV-SLSAATARAFLPQPSSS--SPSSIPAPFYTPSFNPKP---------SRRSIIAQAQ 60
           MAV SLSAAT  A   +P SS  SPS+I   F++PSF P+          SRR+I+A+AQ
Sbjct: 1   MAVSSLSAATPLAVQVRPCSSSWSPSAISNTFFSPSFTPRERPHSHSHSHSRRTIVARAQ 60

Query: 61  SQPRQTWLPGLDPPLHLDGSLAGDFGFDPLGLGEDPDSLKWYVQAELVHSRFAMLGVSGI 120
           +QPR+TWLPGLDPP HLDGSLAGDFGFDPLGL EDP+SLKWYVQAEL+HSRFAMLG+SGI
Sbjct: 61  AQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGI 120

Query: 121 LLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMG----FVETKRYMDFKSPG 180
           LLTDLLRVTG+SK+PVWY AGA EYGFANKETLFIVQLLLMG    FVETKRYMDFKSPG
Sbjct: 121 LLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGSQILFVETKRYMDFKSPG 180

Query: 181 SQAQEGTFFGLESALRGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLG 240
           SQAQEGTFFGLE+AL GLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAM+G
Sbjct: 181 SQAQEGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVG 240

Query: 241 IFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP 262
           IFVQAYVTH GPIDNLVEHLSNPWHKTIIQTLSSSSP
Sbjct: 241 IFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP 277

[Close]

BLAST of Lcy01g017930 vs. ExPASy TrEMBL
Match: A0A6J1GH16 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111454144 PE=3 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 5.7e-120
Identity = 224/266 (84.21%), Postives = 233/266 (87.59%), Query Frame = 0


Query: 1   MAVSLSAATARAFLPQPSSSSPSSIPAPFYTPSFNPK------PSRRSIIAQA--QSQPR 60
           MAVSLSAAT+   LP  S          FY+ S +PK      PSRR++ AQA  QSQPR
Sbjct: 1   MAVSLSAATSFHLLPSSS----------FYSSSLSPKQHLLRSPSRRTVTAQAQSQSQPR 60

Query: 61  QTWLPGLDPPLHLDGSLAGDFGFDPLGLGEDPDSLKWYVQAELVHSRFAMLGVSGILLTD 120
           QTWLPGLDPP HLDG+LAGDFGFDPLGLGEDP SLKW+VQAELVHSRFAMLGVSGILLTD
Sbjct: 61  QTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTD 120

Query: 121 LLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTF 180
           LLRVTGIS+LPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTF
Sbjct: 121 LLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTF 180

Query: 181 FGLESALRGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVT 240
           FGLESA  GLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVT
Sbjct: 181 FGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVT 240

Query: 241 HTGPIDNLVEHLSNPWHKTIIQTLSS 259
            TGPIDNLVEHLSNPWH T+I TLSS
Sbjct: 241 QTGPIDNLVEHLSNPWHNTVIHTLSS 256

[Close]

BLAST of Lcy01g017930 vs. ExPASy TrEMBL
Match: A0A5A7UY53 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00360 PE=3 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 2.9e-119
Identity = 224/270 (82.96%), Postives = 236/270 (87.41%), Query Frame = 0


Query: 1   MAVSLSAATARAFLPQPSSSSPSSIPAPFYTPSFNP--------KPSRRS-IIAQAQSQP 60
           MAVS+SAAT   F   PSSSS        +TP FNP         PSR S +IA AQS+ 
Sbjct: 1   MAVSISAAT--PFHLHPSSSS--------HTPLFNPTNQFVRLRSPSRPSLLIAHAQSEH 60

Query: 61  RQTWLPGLDPPLHLDGSLAGDFGFDPLGLGEDPDSLKWYVQAELVHSRFAMLGVSGILLT 120
           RQTWLPGLDPP +LDG+L GDFGFDPLGLGEDPDSLKWYVQAELVH RFAMLGV+G+LLT
Sbjct: 61  RQTWLPGLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLT 120

Query: 121 DLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGT 180
           DLLRVTGIS+LPVWYNAGAVEYGFANK TLFIVQLLLMGFVETKRYMDFKSPGSQAQEGT
Sbjct: 121 DLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGT 180

Query: 181 FFGLESALRGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYV 240
           FFGLE+A  GLEPGYPGGPLLNPLG+AKD+KNAHDWKLKEIKNGRLAMVAMLGIFVQAYV
Sbjct: 181 FFGLEAAFEGLEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRLAMVAMLGIFVQAYV 240

Query: 241 THTGPIDNLVEHLSNPWHKTIIQTLSSSSP 262
           THTGPIDNLVEHLSNPWHKTIIQTLSSSSP
Sbjct: 241 THTGPIDNLVEHLSNPWHKTIIQTLSSSSP 260

[Close]

BLAST of Lcy01g017930 vs. NCBI nr
Match: XP_038886221.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Benincasa hispida])

HSP 1 Score: 454.1 bits (1167), Expect = 7.9e-124
Identity = 234/268 (87.31%), Postives = 243/268 (90.67%), Query Frame = 0


Query: 1   MAVSLSAATAR--AFLPQPSSSSPSSIPAPFYTPSFNP-------KPSRRS-IIAQAQSQ 60
           MAVS+SAATAR  AF  QPSSSS S      YTPSFNP        PSRR+ +IAQAQS+
Sbjct: 1   MAVSVSAATARATAFHLQPSSSSSS------YTPSFNPNQSLRLRSPSRRTLLIAQAQSE 60

Query: 61  PRQTWLPGLDPPLHLDGSLAGDFGFDPLGLGEDPDSLKWYVQAELVHSRFAMLGVSGILL 120
            RQTWLPGLDPP HLDG+LAGDFGFDPLGLGEDP SLKWYVQAELVHSRFAMLGVSGILL
Sbjct: 61  HRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWYVQAELVHSRFAMLGVSGILL 120

Query: 121 TDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEG 180
           TDLLRVTGIS+LPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEG
Sbjct: 121 TDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEG 180

Query: 181 TFFGLESALRGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAY 240
           TFFGLE+A  GLEPGYPGGPLLNPLG+AKDIKNAH+WKLKEIKNGRLAMVAMLGIFVQAY
Sbjct: 181 TFFGLEAAFEGLEPGYPGGPLLNPLGIAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAY 240

Query: 241 VTHTGPIDNLVEHLSNPWHKTIIQTLSS 259
           VTHTGPIDNLVEHLSNPWHKTIIQTLSS
Sbjct: 241 VTHTGPIDNLVEHLSNPWHKTIIQTLSS 262

[Close]

BLAST of Lcy01g017930 vs. NCBI nr
Match: XP_022144176.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic isoform X2 [Momordica charantia])

HSP 1 Score: 449.5 bits (1155), Expect = 2.0e-122
Identity = 227/273 (83.15%), Postives = 244/273 (89.38%), Query Frame = 0


Query: 1   MAV-SLSAATARAFLPQPSSS--SPSSIPAPFYTPSFNPKP---------SRRSIIAQAQ 60
           MAV SLSAAT  A   +P SS  SPS+I   F++PSF P+          SRR+I+A+AQ
Sbjct: 1   MAVSSLSAATPLAVQVRPCSSSWSPSAISNTFFSPSFTPRERPHSHSHSHSRRTIVARAQ 60

Query: 61  SQPRQTWLPGLDPPLHLDGSLAGDFGFDPLGLGEDPDSLKWYVQAELVHSRFAMLGVSGI 120
           +QPR+TWLPGLDPP HLDGSLAGDFGFDPLGL EDP+SLKWYVQAEL+HSRFAMLG+SGI
Sbjct: 61  AQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGI 120

Query: 121 LLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ 180
           LLTDLLRVTG+SK+PVWY AGA EYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ
Sbjct: 121 LLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ 180

Query: 181 EGTFFGLESALRGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQ 240
           EGTFFGLE+AL GLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAM+GIFVQ
Sbjct: 181 EGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQ 240

Query: 241 AYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP 262
           AYVTH GPIDNLVEHLSNPWHKTIIQTLSSSSP
Sbjct: 241 AYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP 273

[Close]

BLAST of Lcy01g017930 vs. NCBI nr
Match: XP_004150882.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucumis sativus] >KGN62506.1 hypothetical protein Csa_022315 [Cucumis sativus])

HSP 1 Score: 445.3 bits (1144), Expect = 3.7e-121
Identity = 228/269 (84.76%), Postives = 237/269 (88.10%), Query Frame = 0


Query: 1   MAVSLSAATARAFLPQPSSSSPSSIPAPFYTPSFNP-------KPSRRS-IIAQAQSQPR 60
           MAVS SAATA      PSSSS        YTP FNP        PSRR+ +IA AQS+ R
Sbjct: 1   MAVSFSAATALHL--HPSSSS--------YTPLFNPSQFLRLRSPSRRTLLIAHAQSEHR 60

Query: 61  QTWLPGLDPPLHLDGSLAGDFGFDPLGLGEDPDSLKWYVQAELVHSRFAMLGVSGILLTD 120
           QTWLPGLDPP HLDG+LAGDFGFDPLGLGEDP SLKWYVQAELVH RFAMLGVSG+LLTD
Sbjct: 61  QTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTD 120

Query: 121 LLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTF 180
           LLRVTGIS+LPVWYNAGAVEYGFANK TLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTF
Sbjct: 121 LLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTF 180

Query: 181 FGLESALRGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVT 240
           FGLE+A +GLEPGYPGGPLLNPLG+AKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVT
Sbjct: 181 FGLEAAFKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVT 240

Query: 241 HTGPIDNLVEHLSNPWHKTIIQTLSSSSP 262
           HTGPIDNLVEHLSNPWHKTIIQTLSSSSP
Sbjct: 241 HTGPIDNLVEHLSNPWHKTIIQTLSSSSP 259

[Close]

BLAST of Lcy01g017930 vs. NCBI nr
Match: XP_022144175.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 443.7 bits (1140), Expect = 1.1e-120
Identity = 227/277 (81.95%), Postives = 244/277 (88.09%), Query Frame = 0


Query: 1   MAV-SLSAATARAFLPQPSSS--SPSSIPAPFYTPSFNPKP---------SRRSIIAQAQ 60
           MAV SLSAAT  A   +P SS  SPS+I   F++PSF P+          SRR+I+A+AQ
Sbjct: 1   MAVSSLSAATPLAVQVRPCSSSWSPSAISNTFFSPSFTPRERPHSHSHSHSRRTIVARAQ 60

Query: 61  SQPRQTWLPGLDPPLHLDGSLAGDFGFDPLGLGEDPDSLKWYVQAELVHSRFAMLGVSGI 120
           +QPR+TWLPGLDPP HLDGSLAGDFGFDPLGL EDP+SLKWYVQAEL+HSRFAMLG+SGI
Sbjct: 61  AQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGI 120

Query: 121 LLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMG----FVETKRYMDFKSPG 180
           LLTDLLRVTG+SK+PVWY AGA EYGFANKETLFIVQLLLMG    FVETKRYMDFKSPG
Sbjct: 121 LLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGSQILFVETKRYMDFKSPG 180

Query: 181 SQAQEGTFFGLESALRGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLG 240
           SQAQEGTFFGLE+AL GLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAM+G
Sbjct: 181 SQAQEGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVG 240

Query: 241 IFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP 262
           IFVQAYVTH GPIDNLVEHLSNPWHKTIIQTLSSSSP
Sbjct: 241 IFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP 277

[Close]

BLAST of Lcy01g017930 vs. NCBI nr
Match: XP_022951251.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita moschata] >KAG6585667.1 Photosystem I chlorophyll a/b-binding protein 5, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020573.1 Photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 440.3 bits (1131), Expect = 1.2e-119
Identity = 224/266 (84.21%), Postives = 233/266 (87.59%), Query Frame = 0


Query: 1   MAVSLSAATARAFLPQPSSSSPSSIPAPFYTPSFNPK------PSRRSIIAQA--QSQPR 60
           MAVSLSAAT+   LP  S          FY+ S +PK      PSRR++ AQA  QSQPR
Sbjct: 1   MAVSLSAATSFHLLPSSS----------FYSSSLSPKQHLLRSPSRRTVTAQAQSQSQPR 60

Query: 61  QTWLPGLDPPLHLDGSLAGDFGFDPLGLGEDPDSLKWYVQAELVHSRFAMLGVSGILLTD 120
           QTWLPGLDPP HLDG+LAGDFGFDPLGLGEDP SLKW+VQAELVHSRFAMLGVSGILLTD
Sbjct: 61  QTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTD 120

Query: 121 LLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTF 180
           LLRVTGIS+LPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTF
Sbjct: 121 LLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTF 180

Query: 181 FGLESALRGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVT 240
           FGLESA  GLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVT
Sbjct: 181 FGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVT 240

Query: 241 HTGPIDNLVEHLSNPWHKTIIQTLSS 259
            TGPIDNLVEHLSNPWH T+I TLSS
Sbjct: 241 QTGPIDNLVEHLSNPWHNTVIHTLSS 256

[Close]

BLAST of Lcy01g017930 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 368.2 bits (944), Expect = 5.3e-102
Identity = 173/210 (82.38%), Postives = 192/210 (91.43%), Query Frame = 0


Query: 52  RQTWLPGLDPPLHLDGSLAGDFGFDPLGLGEDPDSLKWYVQAELVHSRFAMLGVSGILLT 111
           R TWLPGL+PP +LDG+LAGD+GFDPLGLGEDP+SLKWYVQAELVHSRFAMLGV+GIL T
Sbjct: 46  RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105

Query: 112 DLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGT 171
           DLLR TGI  LPVWY AGAV++ FA+ +TL +VQ LLMGF ETKRYMDF SPGSQA+EG+
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165

Query: 172 -FFGLESALRGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAY 231
            FFGLE+AL GLEPGYPGGPLLNPLGLAKD++NAHDWKLKEIKNGRLAM+AMLG FVQA 
Sbjct: 166 FFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQAS 225

Query: 232 VTHTGPIDNLVEHLSNPWHKTIIQTLSSSS 261
           VTHTGPIDNLVEHLSNPWHKTIIQTL +S+
Sbjct: 226 VTHTGPIDNLVEHLSNPWHKTIIQTLFTST 255

[Close]

BLAST of Lcy01g017930 vs. TAIR 10
Match: AT1G45474.2 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 368.2 bits (944), Expect = 5.3e-102
Identity = 173/210 (82.38%), Postives = 192/210 (91.43%), Query Frame = 0


Query: 52  RQTWLPGLDPPLHLDGSLAGDFGFDPLGLGEDPDSLKWYVQAELVHSRFAMLGVSGILLT 111
           R TWLPGL+PP +LDG+LAGD+GFDPLGLGEDP+SLKWYVQAELVHSRFAMLGV+GIL T
Sbjct: 46  RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105

Query: 112 DLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGT 171
           DLLR TGI  LPVWY AGAV++ FA+ +TL +VQ LLMGF ETKRYMDF SPGSQA+EG+
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165

Query: 172 -FFGLESALRGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAY 231
            FFGLE+AL GLEPGYPGGPLLNPLGLAKD++NAHDWKLKEIKNGRLAM+AMLG FVQA 
Sbjct: 166 FFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQAS 225

Query: 232 VTHTGPIDNLVEHLSNPWHKTIIQTLSSSS 261
           VTHTGPIDNLVEHLSNPWHKTIIQTL +S+
Sbjct: 226 VTHTGPIDNLVEHLSNPWHKTIIQTLFTST 255

[Close]

BLAST of Lcy01g017930 vs. TAIR 10
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4 )

HSP 1 Score: 210.7 bits (535), Expect = 1.4e-54
Identity = 106/203 (52.22%), Postives = 141/203 (69.46%), Query Frame = 0


Query: 55  WLPGLDPPLHLDGSLAGDFGFDPLGLGEDPDSLKWYVQAELVHSRFAMLGVSGILLTDLL 114
           WLPGL  P +L GSLAGD GFDPLGL EDP++LKW+VQAELV+ R+AMLGV+G+LL ++ 
Sbjct: 57  WLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVF 116

Query: 115 RVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFG 174
              GI  +P WY+AG  +Y FA+  TLF+++ +L  +VE +R+ D K+PGS  Q+  F  
Sbjct: 117 TKIGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF-- 176

Query: 175 LESALRGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHT 234
            + +L   E GYPGG + NPL  A       + K KE+ NGRLAM+A LG  VQ  VT  
Sbjct: 177 KQYSLPKGEVGYPGG-IFNPLNFAP----TQEAKEKELANGRLAMLAFLGFVVQHNVTGK 236

Query: 235 GPIDNLVEHLSNPWHKTIIQTLS 258
           GP +NL++HLS+PWH TI+QT +
Sbjct: 237 GPFENLLQHLSDPWHNTIVQTFN 251

[Close]

BLAST of Lcy01g017930 vs. TAIR 10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2 )

HSP 1 Score: 202.2 bits (513), Expect = 5.1e-52
Identity = 118/255 (46.27%), Postives = 151/255 (59.22%), Query Frame = 0


Query: 1   MAVSLSAATARAFLPQPS--SSSPSSIPAPFYTPSFNPKPSRRSIIAQAQSQPRQTWLPG 60
           MA SL A++A A +  PS        +      P+ + +P   S+ A A    R  W PG
Sbjct: 1   MASSLCASSAIAAISSPSFLGGKKLRLKKKLTVPAVS-RPD-ASVRAVAADPDRPIWFPG 60

Query: 61  LDPPLHLDGSLAGDFGFDPLGLGEDPDSLKWYVQAELVHSRFAMLGVSGILLTDLLRVTG 120
             PP  LDGSL GDFGFDPLGL  DPDSLKW VQAE+VH R+AMLG +GI + + L   G
Sbjct: 61  STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIG 120

Query: 121 ISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESA 180
           I   P WY AG  EY F +K TLF+V+L+L+G+ E +R+ D   PGS   +  F    + 
Sbjct: 121 ILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVF--PNNK 180

Query: 181 LRGLEPGYPGGPLLNPLGLAK-DIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPI 240
           L G + GYPGG   +PLG          + + KEIKNGRLAM+A++G + Q   T TGPI
Sbjct: 181 LTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 240

Query: 241 DNLVEHLSNPWHKTI 253
           DNL  HL++P H TI
Sbjct: 241 DNLFAHLADPGHATI 250

[Close]

BLAST of Lcy01g017930 vs. TAIR 10
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6 )

HSP 1 Score: 179.5 bits (454), Expect = 3.5e-45
Identity = 96/218 (44.04%), Postives = 130/218 (59.63%), Query Frame = 0


Query: 42  SIIAQAQSQPRQTWLPGLDPPLHLDGSLAGDFGFDPLGLGEDPDSLKWYVQAELVHSRFA 101
           S + +     R  W PG  PP  LDGSL GDFGFDPLGLG DPD+LKW+ QAEL+HSR+A
Sbjct: 55  SSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWA 114

Query: 102 MLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFK 161
           ML V+GI++ + L   G  +   WY+AG+ EY FA+  TLF+ Q++LMG+ E +R+ D  
Sbjct: 115 MLAVTGIIIPECLERLGFIENFSWYDAGSREY-FADSTTLFVAQMVLMGWAEGRRWADLI 174

Query: 162 SPGSQAQEGTFFGLESALRGLEPGYPGGPLLNPLGLAK-DIKNAHDWKLKEIKNGRLAMV 221
            PGS   E  +          + GYPGG   + +   +   +     + KEIKNGRLAM+
Sbjct: 175 KPGSVDIEPKY--PHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAML 234

Query: 222 AMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSS 259
           A LG   QA  T   PI+NL+ HL++P H  +    +S
Sbjct: 235 AFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTS 269

The following BLAST results are available for this feature:

BLAST of Lcy01g017930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C639	7.5e-101	82.38	Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis th...	[more]
Q9SQL2	1.5e-53	51.71	Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lh...	[more]
P27521	2.0e-53	52.22	Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
P13869	5.5e-51	47.32	Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 S...	[more]
Q9SYW8	7.1e-51	46.27	Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis th...	[more]

BLAST of Lcy01g017930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CSJ3	9.5e-123	83.15	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A0A0LRB4	1.8e-121	84.76	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A6J1CQX2	5.2e-121	81.95	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1GH16	5.7e-120	84.21	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A5A7UY53	2.9e-119	82.96	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]

BLAST of Lcy01g017930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886221.1	7.9e-124	87.31	photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Benincasa hispid...	[more]
XP_022144176.1	2.0e-122	83.15	photosystem I chlorophyll a/b-binding protein 5, chloroplastic isoform X2 [Momor...	[more]
XP_004150882.1	3.7e-121	84.76	photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucumis sativus]...	[more]
XP_022144175.1	1.1e-120	81.95	photosystem I chlorophyll a/b-binding protein 5, chloroplastic isoform X1 [Momor...	[more]
XP_022951251.1	1.2e-119	84.21	photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita moscha...	[more]

BLAST of Lcy01g017930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G45474.1	5.3e-102	82.38	photosystem I light harvesting complex gene 5	[more]
AT1G45474.2	5.3e-102	82.38	photosystem I light harvesting complex gene 5	[more]
AT3G47470.1	1.4e-54	52.22	light-harvesting chlorophyll-protein complex I subunit A4	[more]
AT3G61470.1	5.1e-52	46.27	photosystem I light harvesting complex gene 2	[more]
AT1G19150.1	3.5e-45	44.04	photosystem I light harvesting complex gene 6	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 62..230 e-value: 1.5E-47 score: 162.1
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 52..260 e-value: 7.2E-61 score: 207.5
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 39..258
None	No IPR available	PANTHER	PTHR21649:SF67	PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 5, CHLOROPLASTIC	coord: 39..258
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 49..258

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g017930.1	Lcy01g017930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding