Lcy01g017830 (gene) Sponge gourd (P93075) v1

Overview
NameLcy01g017830
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptioncalmodulin-like
LocationChr01: 39300632 .. 39301139 (-)
RNA-Seq ExpressionLcy01g017830
SyntenyLcy01g017830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTCAACCTTTCCTCATAGCAGTTACTGTATCGACACAACCGTGTACGAAGGCTGCGAAATTGTGTTGGTTTCACGTGTATTCGTGGGGATCAAATGCCTCGTATAAAACAAAAGAACTCAAGCTTCTCGCAAAAAGAGGCGATGAAAGAATTCTTCAGGGAGTATGATTCCGATGGCGATGGCTTGAGCACCAAAGAATTGTCAGCAGCGTTCGGGAGGCTCGGCGCATTTATCCCTTGCTACCGTGCATGCCGTAGCATGGGCATCGCCGATGCCAATAACGATGGACGTATCACCGACGAAGAACTGGAGAAGATGGTGGATTATGCCATAAAAAAAAAATTCAACATATAATGACATAATCTTAGTTGTCTTTTCAGTTTCCTTGTGAGATGTTAACAAGTAATGTAAAAGGTAAACTCTTCCCTATTATTGTATCTGCATTTCCTGATGCAACAATGATAAAATTTTCCATAATATGGATACAAATCAATAAGCTGCAAGTGC

mRNA sequence

GCTCAACCTTTCCTCATAGCAGTTACTGTATCGACACAACCGTGTACGAAGGCTGCGAAATTGTGTTGGTTTCACGTGTATTCGTGGGGATCAAATGCCTCGTATAAAACAAAAGAACTCAAGCTTCTCGCAAAAAGAGGCGATGAAAGAATTCTTCAGGGAGTATGATTCCGATGGCGATGGCTTGAGCACCAAAGAATTGTCAGCAGCGTTCGGGAGGCTCGGCGCATTTATCCCTTGCTACCGTGCATGCCGTAGCATGGGCATCGCCGATGCCAATAACGATGGACGTATCACCGACGAAGAACTGGAGAAGATGGTGGATTATGCCATAAAAAAAAAATTCAACATATAATGACATAATCTTAGTTGTCTTTTCAGTTTCCTTGTGAGATGTTAACAAGTAATGTAAAAGGTAAACTCTTCCCTATTATTGTATCTGCATTTCCTGATGCAACAATGATAAAATTTTCCATAATATGGATACAAATCAATAAGCTGCAAGTGC

Coding sequence (CDS)

ATGCCTCGTATAAAACAAAAGAACTCAAGCTTCTCGCAAAAAGAGGCGATGAAAGAATTCTTCAGGGAGTATGATTCCGATGGCGATGGCTTGAGCACCAAAGAATTGTCAGCAGCGTTCGGGAGGCTCGGCGCATTTATCCCTTGCTACCGTGCATGCCGTAGCATGGGCATCGCCGATGCCAATAACGATGGACGTATCACCGACGAAGAACTGGAGAAGATGGTGGATTATGCCATAAAAAAAAAATTCAACATATAA

Protein sequence

MPRIKQKNSSFSQKEAMKEFFREYDSDGDGLSTKELSAAFGRLGAFIPCYRACRSMGIADANNDGRITDEELEKMVDYAIKKKFNI
Homology
BLAST of Lcy01g017830 vs. ExPASy TrEMBL
Match: A0A0A0LKW4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358860 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.8e-15
Identity = 47/83 (56.63%), Postives = 62/83 (74.70%), Query Frame = 0

Query: 5  KQKNSSFSQKEAMKEFFREYDSDGDG-LSTKELSAAFGRLGAFIPCYRACRSMGIADANN 64
          K+K+    QKE MKE FRE+D +GDG LS KELS AFG+ GAF P YRA   + +AD + 
Sbjct: 8  KKKSGYKLQKEEMKEMFREHDFNGDGRLSIKELSRAFGQFGAFFPLYRAAFGLFLADDDG 67

Query: 65 DGRITDEELEKMVDYAIKKKFNI 87
          DG I+++EL+K+VDYAIK K+N+
Sbjct: 68 DGFISEQELDKVVDYAIKCKYNL 90

BLAST of Lcy01g017830 vs. ExPASy TrEMBL
Match: A0A5A7UY46 (Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00260 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.3e-15
Identity = 47/83 (56.63%), Postives = 61/83 (73.49%), Query Frame = 0

Query: 5  KQKNSSFSQKEAMKEFFREYDSDGDG-LSTKELSAAFGRLGAFIPCYRACRSMGIADANN 64
          K+K+    QKE MK+ FRE+D +GDG LS KELS AFG  GAF P YRA   + +AD + 
Sbjct: 8  KKKSGYKLQKEEMKQIFREHDFNGDGRLSIKELSRAFGSFGAFFPLYRAAFGLFVADDDG 67

Query: 65 DGRITDEELEKMVDYAIKKKFNI 87
          DG I+++ELEK+VDYAIK K+N+
Sbjct: 68 DGFISEQELEKVVDYAIKCKYNL 90

BLAST of Lcy01g017830 vs. ExPASy TrEMBL
Match: A0A6J1CS20 (calmodulin-like protein 5 OS=Momordica charantia OX=3673 GN=LOC111014054 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.2e-13
Identity = 47/84 (55.95%), Postives = 60/84 (71.43%), Query Frame = 0

Query: 4  IKQKNSSFSQKEAMKEFFREYDSDGDG-LSTKELSAAFGRLGAFIPCYRACRSMGIADAN 63
          +K+K S    +E +K  FR +D +GDG LS KELS AFG LGA +P YRA   +  ADA+
Sbjct: 6  VKKKPSIKLLREEVKAIFRAHDINGDGHLSIKELSRAFGSLGALLPLYRAVCGILAADAD 65

Query: 64 NDGRITDEELEKMVDYAIKKKFNI 87
           DG ITDEELEK+VDYA+K K++I
Sbjct: 66 GDGLITDEELEKVVDYAVKCKYDI 89

BLAST of Lcy01g017830 vs. ExPASy TrEMBL
Match: A0A0A0KIY4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G068170 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.1e-10
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 0

Query: 4   IKQKNSSFSQKEAMKEFFREYDSDGDG-LSTKELSAAFGRLGAFIPCYRACRSMGIADAN 63
           IK  N  FS +E +KE F+ +DSD DG L+ +E++ AF  LG  +P Y+A   M  ADAN
Sbjct: 94  IKASNMQFS-REQIKEIFQYHDSDNDGFLNLREVTKAFAFLGTILPLYKAYHGMVYADAN 153

Query: 64  NDGRITDEELEKMVDYAIK 82
            DG I+ +ELEK+VDYA K
Sbjct: 154 KDGLISKDELEKLVDYAYK 171

BLAST of Lcy01g017830 vs. ExPASy TrEMBL
Match: A0A5A7VI66 (Putative calcium-binding protein CML11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G001550 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.9e-10
Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = 0

Query: 4   IKQKNSSFSQKEAMKEFFREYDSDGDG-LSTKELSAAFGRLGAFIPCYRACRSMGIADAN 63
           IK  N SFS+++ +KE FR +D++ DG L+  EL+ AF  LG+  P Y+AC  M  ADAN
Sbjct: 89  IKSSNMSFSRQQ-IKEIFRYHDNNNDGFLNIVELTKAFAFLGSMFPFYKACYGMVYADAN 148

Query: 64  NDGRITDEELEKMVDYA---IKKK 84
            DG I++ EL+K++DYA   IKKK
Sbjct: 149 ADGLISEAELDKLIDYATKIIKKK 171

BLAST of Lcy01g017830 vs. NCBI nr
Match: KAG6585660.1 (Calmodulin-like protein 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.5 bits (236), Expect = 2.4e-16
Identity = 50/83 (60.24%), Postives = 65/83 (78.31%), Query Frame = 0

Query: 5  KQKNSSFSQKEAMKEFFREYDSDGDG-LSTKELSAAFGRLGAFIPCYRACRSMGIADANN 64
          K+K++S  ++E +K  FRE+D +GDG LS +ELS AFG  GAF+P YRA RSM  ADAN 
Sbjct: 8  KKKSTSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANG 67

Query: 65 DGRITDEELEKMVDYAIKKKFNI 87
          DG IT++EL+K+VDYAIK K+NI
Sbjct: 68 DGFITEQELDKVVDYAIKCKYNI 90

BLAST of Lcy01g017830 vs. NCBI nr
Match: KAG6585659.1 (hypothetical protein SDJN03_18392, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.0 bits (227), Expect = 2.6e-15
Identity = 48/83 (57.83%), Postives = 62/83 (74.70%), Query Frame = 0

Query: 5  KQKNSSFSQKEAMKEFFREYDSDGDG-LSTKELSAAFGRLGAFIPCYRACRSMGIADANN 64
          K+ +SS   +E +K  F+E+D +GDG LS +ELS AFG LGAF+P YRA R + IAD N 
Sbjct: 7  KKNSSSMLPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNG 66

Query: 65 DGRITDEELEKMVDYAIKKKFNI 87
          DG IT+ EL+K+VDYAIK K+NI
Sbjct: 67 DGYITEHELDKVVDYAIKCKYNI 89

BLAST of Lcy01g017830 vs. NCBI nr
Match: KGN62515.1 (hypothetical protein Csa_022644 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 9.9e-15
Identity = 47/83 (56.63%), Postives = 62/83 (74.70%), Query Frame = 0

Query: 5  KQKNSSFSQKEAMKEFFREYDSDGDG-LSTKELSAAFGRLGAFIPCYRACRSMGIADANN 64
          K+K+    QKE MKE FRE+D +GDG LS KELS AFG+ GAF P YRA   + +AD + 
Sbjct: 8  KKKSGYKLQKEEMKEMFREHDFNGDGRLSIKELSRAFGQFGAFFPLYRAAFGLFLADDDG 67

Query: 65 DGRITDEELEKMVDYAIKKKFNI 87
          DG I+++EL+K+VDYAIK K+N+
Sbjct: 68 DGFISEQELDKVVDYAIKCKYNL 90

BLAST of Lcy01g017830 vs. NCBI nr
Match: KAA0060893.1 (putative calcium-binding protein CML10 [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 1.3e-14
Identity = 47/83 (56.63%), Postives = 61/83 (73.49%), Query Frame = 0

Query: 5  KQKNSSFSQKEAMKEFFREYDSDGDG-LSTKELSAAFGRLGAFIPCYRACRSMGIADANN 64
          K+K+    QKE MK+ FRE+D +GDG LS KELS AFG  GAF P YRA   + +AD + 
Sbjct: 8  KKKSGYKLQKEEMKQIFREHDFNGDGRLSIKELSRAFGSFGAFFPLYRAAFGLFVADDDG 67

Query: 65 DGRITDEELEKMVDYAIKKKFNI 87
          DG I+++ELEK+VDYAIK K+N+
Sbjct: 68 DGFISEQELEKVVDYAIKCKYNL 90

BLAST of Lcy01g017830 vs. NCBI nr
Match: XP_022144349.1 (calmodulin-like protein 5 [Momordica charantia])

HSP 1 Score: 85.5 bits (210), Expect = 2.4e-13
Identity = 47/84 (55.95%), Postives = 60/84 (71.43%), Query Frame = 0

Query: 4  IKQKNSSFSQKEAMKEFFREYDSDGDG-LSTKELSAAFGRLGAFIPCYRACRSMGIADAN 63
          +K+K S    +E +K  FR +D +GDG LS KELS AFG LGA +P YRA   +  ADA+
Sbjct: 6  VKKKPSIKLLREEVKAIFRAHDINGDGHLSIKELSRAFGSLGALLPLYRAVCGILAADAD 65

Query: 64 NDGRITDEELEKMVDYAIKKKFNI 87
           DG ITDEELEK+VDYA+K K++I
Sbjct: 66 GDGLITDEELEKVVDYAVKCKYDI 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LKW44.8e-1556.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358860 PE=4 SV=1[more]
A0A5A7UY466.3e-1556.63Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A6J1CS201.2e-1355.95calmodulin-like protein 5 OS=Momordica charantia OX=3673 GN=LOC111014054 PE=4 SV... [more]
A0A0A0KIY46.1e-1050.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G068170 PE=4 SV=1[more]
A0A5A7VI667.9e-1050.00Putative calcium-binding protein CML11 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
Match NameE-valueIdentityDescription
KAG6585660.12.4e-1660.24Calmodulin-like protein 5, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG6585659.12.6e-1557.83hypothetical protein SDJN03_18392, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN62515.19.9e-1556.63hypothetical protein Csa_022644 [Cucumis sativus][more]
KAA0060893.11.3e-1456.63putative calcium-binding protein CML10 [Cucumis melo var. makuwa][more]
XP_022144349.12.4e-1355.95calmodulin-like protein 5 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.238.10coord: 5..83
e-value: 1.1E-10
score: 42.9
IPR002048EF-hand domainPFAMPF13202EF-hand_5coord: 59..76
e-value: 2.1E-4
score: 20.7
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 12..46
score: 12.142296
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 60..72
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 9..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy01g017830.1Lcy01g017830.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding