Lcy01g017420 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g017420
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	mediator of RNA polymerase II transcription subunit 18
Location	Chr01: 38893635 .. 38896036 (-)
RNA-Seq Expression	Lcy01g017420
Synteny	Lcy01g017420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTTGATTTCGTTCTTCTCCGTCTCCACTGCTGCCATTTTCGTTCGCCAGCAGTAAGCACACCGAACGCCGTCAATTTTCTTTCTCCTTCTCTTATCATAAAAAACAAGCGAGTCTGAGTCTGAGCCTGAGGCAGCGTAGATGCAGCTTGGAATTGGAAGCTGCGGTTGAAGACGAATTGAGATGCCGAAGATTTGAAACAGAAGCAAATCGAACTGCCCACAGCATACTCTACGATGGAGTGTGTGGTTCAGGGCATAATCGAGACGCAGGCAAGTTCCATTTTTCTCTTCAATCGCTCCTCACTTCATTCACAACCTATTTCCATCTTCATTTCTGATTAATTTGGTTCCGAGAATTTCCCCCTTGCAATCTATTTATCTACTCTTGATGAAATTTACTCAACTCGCTTATTCATCGTCTTCATATGATCTTGAAAGAAGCACTTATGTTCTAGTTGACCCCTGAACATGGTTTTAGACTGGCGTAGAGTCACTGTTGCTGCTATTCTATTAATCACGATTTAATGTCTTCCTGTAATGACAATTATCTGTTATTGTCTACCACGTTGAATGGAGGTTGCTTTTTCCCTTGGTTATTCCTTTCTTGATGGTAGCGAGAAGTTTTGTGCTTTGGACTTCTATTGACAGTTTGATTCTGCAGCACGTTGAGGCGCTTGAGATACTTCTTCAAGGCATTTGCGGCGTTCCTAGAGAACGGTTGAGGCTCCATGAAATATGCCTAAAAAGTGGACCTAACTTAGGTATCAATGTGTTTCTTTATCCTATTATTGCATATTTGACTTGTCAGCATGTGATGGTATTTTGATGGCTTTCTGATTTCAAAAGAGTGATTGATGCGGGTGGCATTTCTCTGAGTCAAATGGAGGTTGTTATTCCCTTTTAGTGTCTAATTTCGCAATCTTTCGGCATGATGTTAGGTGCTGTAACTTCGGAGGTCCGGATCTTGTGTGACCTTGAGCAGGCTGAACCGGCATGGTAGGATTTGATCTTTTGCAGTAATGGGGTGGTTTTTACTTTGGAGCTAAGTGAACTAATGAGAACTGTCTCCATGATTTTTTAGGACGGTTAAACATATTGGAGGGGCAATGAGAGGTGCAGGTGCTGAACAACTCTCTGTTATGGTTAGGACAATGGTAGAAAGCAAAGTTAGCAAGAATGTGCTTCGCCTTTTTTATGCACTTGGCTACAAGTTAGACCACGAGCTGCTGAGAGTCGGTTTTGCTTTCCGGTTCCACCGCGGTGCTCATATAACTGTGACAGTTTCATCCGTTAATAAGATGTTAAAGCTACATTCTACGGATGAGGCTGTACCTGTAACACCTGGTATACAGCTAGTTGAAGTGACAGCTCCAGCAACCTCTGATAACTACTCTGAAGTAGCCGGTGCAGTGTCGACTTTCTGCGAATATCTTGCACCGTAAGTACTTATATTACTTTTTTTTTGTGATTAAACATTAAACTTTTGTGTAAATGAGCTATTCTGTTTATGCATACTCAATAGCCTCTCTCACACACTGGAGCTATGAATTGCTGATATGGTGATATGGGTATCATCTTGCCTCGTTTGAATGAATGCGACTAAAACACGAAACAATTTAAAAAATATCTTTCACAATTTGTATGTTGGTTGAATTGTTTTGCATTGACAAGTTCTCTATTTTACTGGATACTTCTGCCTTGTAATCATTAACTTGCTTCTCCTCCAAAGAAACTAGTAACTATACGTGTGGGGTTAGAAATTTTGAAATAATGCATTATATTTCTGTTAGCTTGAAATCAGATCAAATCCAAAATATGTCTGTCTTTGGCTATTGTTTGTACTTTCTAAAGAGTGACAAAATCAAGCTTTCATCCTTTTACTTGTACAGGCTGCTGCATTTGTCAAAACCGGGAATATCCACAGGTGTTGTTCCTACTGCTGCTGCCGCTGCAGCATCTCTGCTGTCTGATGGTGCAGGAACAACAATGTAGATGGTTTGCTTTAATGGCAACGGTTTTTATGAAAGATGTTCGTTATGATGGCTGAAGTCCGATCATTTTCTCGGCATTGACGTTCTACATCCATCTCTTTTCGAGCCTTGATGTTCCTGGTTTGGATATAATGTAAAAATAGGATTCCACTTTATTAGATTTCGTAACACATACTGAACTTGATGCTGCTCATCTGAATTCTGAATTTGGCTGTGAGTTCCGCTATACCTTAGTAGTTAGCACTTAGTGTAATTGCTACACATGATGTTAGACTAGACTAACTTGTTGGTTCCCATGAATATTTAGTTTGAAGTAGCATTCTTGGAGCACAATTGTCAATGCCTCCAAAGAAACAATGAAGGCTTATATTTATGTGAATATCTTCAACTACCACATCCACTTTTCAGA

mRNA sequence

TCTTTGATTTCGTTCTTCTCCGTCTCCACTGCTGCCATTTTCGTTCGCCAGCAGTAAGCACACCGAACGCCGTCAATTTTCTTTCTCCTTCTCTTATCATAAAAAACAAGCGAGTCTGAGTCTGAGCCTGAGGCAGCGTAGATGCAGCTTGGAATTGGAAGCTGCGGTTGAAGACGAATTGAGATGCCGAAGATTTGAAACAGAAGCAAATCGAACTGCCCACAGCATACTCTACGATGGAGTGTGTGGTTCAGGGCATAATCGAGACGCAGCACGTTGAGGCGCTTGAGATACTTCTTCAAGGCATTTGCGGCGTTCCTAGAGAACGGTTGAGGCTCCATGAAATATGCCTAAAAAGTGGACCTAACTTAGGTGCTGTAACTTCGGAGGTCCGGATCTTGTGTGACCTTGAGCAGGCTGAACCGGCATGGACGGTTAAACATATTGGAGGGGCAATGAGAGGTGCAGGTGCTGAACAACTCTCTGTTATGGTTAGGACAATGGTAGAAAGCAAAGTTAGCAAGAATGTGCTTCGCCTTTTTTATGCACTTGGCTACAAGTTAGACCACGAGCTGCTGAGAGTCGGTTTTGCTTTCCGGTTCCACCGCGGTGCTCATATAACTGTGACAGTTTCATCCGTTAATAAGATGTTAAAGCTACATTCTACGGATGAGGCTGTACCTGTAACACCTGGTATACAGCTAGTTGAAGTGACAGCTCCAGCAACCTCTGATAACTACTCTGAAGTAGCCGGTGCAGTGTCGACTTTCTGCGAATATCTTGCACCGCTGCTGCATTTGTCAAAACCGGGAATATCCACAGGTGTTGTTCCTACTGCTGCTGCCGCTGCAGCATCTCTGCTGTCTGATGGTGCAGGAACAACAATGTAGATGGTTTGCTTTAATGGCAACGGTTTTTATGAAAGATGTTCGTTATGATGGCTGAAGTCCGATCATTTTCTCGGCATTGACGTTCTACATCCATCTCTTTTCGAGCCTTGATGTTCCTGGTTTGGATATAATGTAAAAATAGGATTCCACTTTATTAGATTTCGTAACACATACTGAACTTGATGCTGCTCATCTGAATTCTGAATTTGGCTGTGAGTTCCGCTATACCTTAGTAGTTAGCACTTAGTGTAATTGCTACACATGATGTTAGACTAGACTAACTTGTTGGTTCCCATGAATATTTAGTTTGAAGTAGCATTCTTGGAGCACAATTGTCAATGCCTCCAAAGAAACAATGAAGGCTTATATTTATGTGAATATCTTCAACTACCACATCCACTTTTCAGA

Coding sequence (CDS)

ATGGAGTGTGTGGTTCAGGGCATAATCGAGACGCAGCACGTTGAGGCGCTTGAGATACTTCTTCAAGGCATTTGCGGCGTTCCTAGAGAACGGTTGAGGCTCCATGAAATATGCCTAAAAAGTGGACCTAACTTAGGTGCTGTAACTTCGGAGGTCCGGATCTTGTGTGACCTTGAGCAGGCTGAACCGGCATGGACGGTTAAACATATTGGAGGGGCAATGAGAGGTGCAGGTGCTGAACAACTCTCTGTTATGGTTAGGACAATGGTAGAAAGCAAAGTTAGCAAGAATGTGCTTCGCCTTTTTTATGCACTTGGCTACAAGTTAGACCACGAGCTGCTGAGAGTCGGTTTTGCTTTCCGGTTCCACCGCGGTGCTCATATAACTGTGACAGTTTCATCCGTTAATAAGATGTTAAAGCTACATTCTACGGATGAGGCTGTACCTGTAACACCTGGTATACAGCTAGTTGAAGTGACAGCTCCAGCAACCTCTGATAACTACTCTGAAGTAGCCGGTGCAGTGTCGACTTTCTGCGAATATCTTGCACCGCTGCTGCATTTGTCAAAACCGGGAATATCCACAGGTGTTGTTCCTACTGCTGCTGCCGCTGCAGCATCTCTGCTGTCTGATGGTGCAGGAACAACAATGTAG

Protein sequence

MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVTSEVRILCDLEQAEPAWTVKHIGGAMRGAGAEQLSVMVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAFRFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCEYLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM

Homology

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BLAST of Lcy01g017420 vs. ExPASy Swiss-Prot
Match: Q9SJZ6 (Mediator of RNA polymerase II transcription subunit 18 OS=Arabidopsis thaliana OX=3702 GN=MED18 PE=1 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 1.7e-98
Identity = 176/217 (81.11%), Postives = 203/217 (93.55%), Query Frame = 0


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVTSEVRILCDLEQ 60
           MECVVQGIIETQHVEALEILLQG+CGV RERLR+HE+CL+SGPNLG V+SEVR+LCDL+Q
Sbjct: 3   MECVVQGIIETQHVEALEILLQGLCGVQRERLRVHELCLRSGPNLGVVSSEVRLLCDLDQ 62

Query: 61  AEPAWTVKHIGGAMRGAGAEQLSVMVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120
            EP WTVKH+GGAMRGAGA+Q+SV+VR M+ESKVSKN LR+FYALGYKLDHELL+VGFAF
Sbjct: 63  PEPTWTVKHVGGAMRGAGADQISVLVRNMIESKVSKNALRMFYALGYKLDHELLKVGFAF 122

Query: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180
            F R AHI+V+VSSVNKM K+H+ DEAVPVTPG+Q+V+VTAPATS+NYSEVA AVS+FCE
Sbjct: 123 HFQRTAHISVSVSSVNKMPKVHAIDEAVPVTPGMQIVDVTAPATSENYSEVAAAVSSFCE 182

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 218
           +LAPL+HLSKP ISTGVVPTAAAAAASL+SDG GTT+
Sbjct: 183 FLAPLVHLSKPSISTGVVPTAAAAAASLMSDGGGTTL 219

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BLAST of Lcy01g017420 vs. ExPASy TrEMBL
Match: A0A6J1CS50 (mediator of RNA polymerase II transcription subunit 18 OS=Momordica charantia OX=3673 GN=LOC111014072 PE=3 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.3e-112
Identity = 214/217 (98.62%), Postives = 216/217 (99.54%), Query Frame = 0


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVTSEVRILCDLEQ 60
           MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAV SEVRILCDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRILCDLEQ 60

Query: 61  AEPAWTVKHIGGAMRGAGAEQLSVMVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120
           AEPAWTVKHIGGAMRGAGAEQLSV+VRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF
Sbjct: 61  AEPAWTVKHIGGAMRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120

Query: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180
           RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATS+NYSEVAGAVSTFCE
Sbjct: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCE 180

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 218
           YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 217

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BLAST of Lcy01g017420 vs. ExPASy TrEMBL
Match: A0A1S3BBM1 (mediator of RNA polymerase II transcription subunit 18 OS=Cucumis melo OX=3656 GN=LOC103487937 PE=3 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 6.9e-111
Identity = 211/217 (97.24%), Postives = 215/217 (99.08%), Query Frame = 0


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVTSEVRILCDLEQ 60
           MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGP+LGAV SEVRILCDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQ 60

Query: 61  AEPAWTVKHIGGAMRGAGAEQLSVMVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120
           AEP WTVKHIGGA+RGAGAEQLSV+VRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF
Sbjct: 61  AEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120

Query: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180
           RF+RGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE
Sbjct: 121 RFYRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 218
           YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 217

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BLAST of Lcy01g017420 vs. ExPASy TrEMBL
Match: A0A6J1GHW3 (mediator of RNA polymerase II transcription subunit 18 OS=Cucurbita moschata OX=3662 GN=LOC111454081 PE=3 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 2.0e-110
Identity = 208/217 (95.85%), Postives = 214/217 (98.62%), Query Frame = 0


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVTSEVRILCDLEQ 60
           MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAV SEVRI+CDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRIMCDLEQ 60

Query: 61  AEPAWTVKHIGGAMRGAGAEQLSVMVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120
            EP+WTVKHIGGAMRG+GAEQLSV+VRTMVESKVSKNVLRLFYALGYKLDHELLRVGF+F
Sbjct: 61  TEPSWTVKHIGGAMRGSGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFSF 120

Query: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180
           RFHRG HITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATS+NYSEVAGAVSTFCE
Sbjct: 121 RFHRGTHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCE 180

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 218
           YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 217

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BLAST of Lcy01g017420 vs. ExPASy TrEMBL
Match: A0A0A0LNJ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360810 PE=3 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 3.4e-110
Identity = 212/218 (97.25%), Postives = 215/218 (98.62%), Query Frame = 0


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVTSEVRILCDLEQ 60
           MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGP+LGAV SEVRILCDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQ 60

Query: 61  AEPAWTVKHIGGAMRGAGAEQLSVMVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120
           AEP WTVKHIGGA+RGAGAEQLSV+VRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF
Sbjct: 61  AEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120

Query: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180
           RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE
Sbjct: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLS-DGAGTTM 218
           YLAPLLHLSKPGISTGVVPTAAAAAASLLS DGAGTTM
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSADGAGTTM 218

[Close]

BLAST of Lcy01g017420 vs. ExPASy TrEMBL
Match: A0A6J1KK74 (mediator of RNA polymerase II transcription subunit 18 OS=Cucurbita maxima OX=3661 GN=LOC111496026 PE=3 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 1.0e-109
Identity = 207/217 (95.39%), Postives = 213/217 (98.16%), Query Frame = 0


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVTSEVRILCDLEQ 60
           MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAV SEVRI+CDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRIMCDLEQ 60

Query: 61  AEPAWTVKHIGGAMRGAGAEQLSVMVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120
            EP+WTVKHIGGAMRG+GAEQLSV+VRTMVESKVSKNVLRLFYALGYKLDHELLRVGF+F
Sbjct: 61  TEPSWTVKHIGGAMRGSGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFSF 120

Query: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180
           RFHRG HITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATS+NYSEVA AVSTFCE
Sbjct: 121 RFHRGTHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVASAVSTFCE 180

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 218
           YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 217

[Close]

BLAST of Lcy01g017420 vs. NCBI nr
Match: XP_022144379.1 (mediator of RNA polymerase II transcription subunit 18 [Momordica charantia])

HSP 1 Score: 415.6 bits (1067), Expect = 2.6e-112
Identity = 214/217 (98.62%), Postives = 216/217 (99.54%), Query Frame = 0


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVTSEVRILCDLEQ 60
           MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAV SEVRILCDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRILCDLEQ 60

Query: 61  AEPAWTVKHIGGAMRGAGAEQLSVMVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120
           AEPAWTVKHIGGAMRGAGAEQLSV+VRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF
Sbjct: 61  AEPAWTVKHIGGAMRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120

Query: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180
           RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATS+NYSEVAGAVSTFCE
Sbjct: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCE 180

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 218
           YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 217

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BLAST of Lcy01g017420 vs. NCBI nr
Match: XP_011649597.2 (mediator of RNA polymerase II transcription subunit 18 isoform X1 [Cucumis sativus] >KAE8652099.1 hypothetical protein Csa_022370 [Cucumis sativus])

HSP 1 Score: 412.1 bits (1058), Expect = 2.9e-111
Identity = 212/217 (97.70%), Postives = 215/217 (99.08%), Query Frame = 0


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVTSEVRILCDLEQ 60
           MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGP+LGAV SEVRILCDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQ 60

Query: 61  AEPAWTVKHIGGAMRGAGAEQLSVMVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120
           AEP WTVKHIGGA+RGAGAEQLSV+VRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF
Sbjct: 61  AEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120

Query: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180
           RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE
Sbjct: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 218
           YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 217

[Close]

BLAST of Lcy01g017420 vs. NCBI nr
Match: XP_038885244.1 (mediator of RNA polymerase II transcription subunit 18 [Benincasa hispida] >XP_038885245.1 mediator of RNA polymerase II transcription subunit 18 [Benincasa hispida])

HSP 1 Score: 411.8 bits (1057), Expect = 3.8e-111
Identity = 211/217 (97.24%), Postives = 215/217 (99.08%), Query Frame = 0


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVTSEVRILCDLEQ 60
           MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGP+LGAV SE+RILCDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEIRILCDLEQ 60

Query: 61  AEPAWTVKHIGGAMRGAGAEQLSVMVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120
           AEP WTVKHIGGA+RGAGAEQLSV+VRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF
Sbjct: 61  AEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120

Query: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180
           RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE
Sbjct: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 218
           YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 217

[Close]

BLAST of Lcy01g017420 vs. NCBI nr
Match: XP_008444669.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 18 [Cucumis melo])

HSP 1 Score: 409.8 bits (1052), Expect = 1.4e-110
Identity = 211/217 (97.24%), Postives = 215/217 (99.08%), Query Frame = 0


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVTSEVRILCDLEQ 60
           MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGP+LGAV SEVRILCDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQ 60

Query: 61  AEPAWTVKHIGGAMRGAGAEQLSVMVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120
           AEP WTVKHIGGA+RGAGAEQLSV+VRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF
Sbjct: 61  AEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120

Query: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180
           RF+RGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE
Sbjct: 121 RFYRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 218
           YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 217

[Close]

BLAST of Lcy01g017420 vs. NCBI nr
Match: XP_022951149.1 (mediator of RNA polymerase II transcription subunit 18 [Cucurbita moschata] >XP_023536835.1 mediator of RNA polymerase II transcription subunit 18 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 408.3 bits (1048), Expect = 4.2e-110
Identity = 208/217 (95.85%), Postives = 214/217 (98.62%), Query Frame = 0


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVTSEVRILCDLEQ 60
           MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAV SEVRI+CDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVASEVRIMCDLEQ 60

Query: 61  AEPAWTVKHIGGAMRGAGAEQLSVMVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120
            EP+WTVKHIGGAMRG+GAEQLSV+VRTMVESKVSKNVLRLFYALGYKLDHELLRVGF+F
Sbjct: 61  TEPSWTVKHIGGAMRGSGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFSF 120

Query: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180
           RFHRG HITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATS+NYSEVAGAVSTFCE
Sbjct: 121 RFHRGTHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVAGAVSTFCE 180

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 218
           YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 217

[Close]

BLAST of Lcy01g017420 vs. TAIR 10
Match: AT2G22370.1 (unknown protein; Has 127 Blast hits to 127 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 360.1 bits (923), Expect = 1.2e-99
Identity = 176/217 (81.11%), Postives = 203/217 (93.55%), Query Frame = 0


Query: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPNLGAVTSEVRILCDLEQ 60
           MECVVQGIIETQHVEALEILLQG+CGV RERLR+HE+CL+SGPNLG V+SEVR+LCDL+Q
Sbjct: 3   MECVVQGIIETQHVEALEILLQGLCGVQRERLRVHELCLRSGPNLGVVSSEVRLLCDLDQ 62

Query: 61  AEPAWTVKHIGGAMRGAGAEQLSVMVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120
            EP WTVKH+GGAMRGAGA+Q+SV+VR M+ESKVSKN LR+FYALGYKLDHELL+VGFAF
Sbjct: 63  PEPTWTVKHVGGAMRGAGADQISVLVRNMIESKVSKNALRMFYALGYKLDHELLKVGFAF 122

Query: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180
            F R AHI+V+VSSVNKM K+H+ DEAVPVTPG+Q+V+VTAPATS+NYSEVA AVS+FCE
Sbjct: 123 HFQRTAHISVSVSSVNKMPKVHAIDEAVPVTPGMQIVDVTAPATSENYSEVAAAVSSFCE 182

Query: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 218
           +LAPL+HLSKP ISTGVVPTAAAAAASL+SDG GTT+
Sbjct: 183 FLAPLVHLSKPSISTGVVPTAAAAAASLMSDGGGTTL 219

The following BLAST results are available for this feature:

BLAST of Lcy01g017420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJZ6	1.7e-98	81.11	Mediator of RNA polymerase II transcription subunit 18 OS=Arabidopsis thaliana O...	[more]

BLAST of Lcy01g017420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CS50	1.3e-112	98.62	mediator of RNA polymerase II transcription subunit 18 OS=Momordica charantia OX...	[more]
A0A1S3BBM1	6.9e-111	97.24	mediator of RNA polymerase II transcription subunit 18 OS=Cucumis melo OX=3656 G...	[more]
A0A6J1GHW3	2.0e-110	95.85	mediator of RNA polymerase II transcription subunit 18 OS=Cucurbita moschata OX=...	[more]
A0A0A0LNJ4	3.4e-110	97.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360810 PE=3 SV=1	[more]
A0A6J1KK74	1.0e-109	95.39	mediator of RNA polymerase II transcription subunit 18 OS=Cucurbita maxima OX=36...	[more]

BLAST of Lcy01g017420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144379.1	2.6e-112	98.62	mediator of RNA polymerase II transcription subunit 18 [Momordica charantia]	[more]
XP_011649597.2	2.9e-111	97.70	mediator of RNA polymerase II transcription subunit 18 isoform X1 [Cucumis sativ...	[more]
XP_038885244.1	3.8e-111	97.24	mediator of RNA polymerase II transcription subunit 18 [Benincasa hispida] >XP_0...	[more]
XP_008444669.1	1.4e-110	97.24	PREDICTED: mediator of RNA polymerase II transcription subunit 18 [Cucumis melo]	[more]
XP_022951149.1	4.2e-110	95.85	mediator of RNA polymerase II transcription subunit 18 [Cucurbita moschata] >XP_...	[more]

BLAST of Lcy01g017420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G22370.1	1.2e-99	81.11	unknown protein; Has 127 Blast hits to 127 proteins in 48 species: Archae - 0; B...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.320.10		coord: 1..190 e-value: 1.4E-11 score: 46.5
IPR019095	Mediator complex, subunit Med18	PANTHER	PTHR13321	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION, SUBUNIT 18	coord: 1..201

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g017420.1	Lcy01g017420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006369	termination of RNA polymerase II transcription
cellular_component	GO:0070847	core mediator complex
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity