Lcy01g017140 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g017140
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Zinc finger and BTB domain-containing protein 47
Location	Chr01: 38683189 .. 38683881 (+)
RNA-Seq Expression	Lcy01g017140
Synteny	Lcy01g017140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAATTCCCATCAGTCCATCATCCATTTCAAATTCCCATTTCAACTCATTGTCTCTTTTGCTTTTGTTCTCTTCTCTTCTCGCTCTCGCAATCAATTTTTCATTTTCATTTTCATTTCTATTTTCTACTTTTCTTTCATCCCTTTAATCCTAAATTCCAGTTTCTCGTCGGCTGCTGATCGATTTCGTTTCGATTTCTGTTCGAACAAGCTTCTGATTCACTGGCTATTCTAATCATCTCGACTCTGTGATTTTTCTTTTCGTTTTTTTTTTTTTGTCTGTTTGATGGGAAAGAAGAAAACCCAGAAGACTAAGCAGATTGCAGTCGCCATAGCTGAAACCTCCACCTCCAAATTACCCGATGATGGCGGCGACGGCCAATCCGTACGGCCCAGGAAGAGAGGCCGACCTCGTAAGATCCTCGATGAACCACAGAACGAACAGGATAGCCAGAAACTGCCTTCGCCGCCGCCGGAAGTTGCAGATAAACCGCAGGAGAAGAAGGCGAAAACCACCAGCGATGAGCCGCCGCCGCCGGCTTCCTTGGAAGGAGCTTCGACGCGAGAACAAGAACAGGAAGAACGCAAATCGGGAGATGGGTTGAGAAGCAGAGGAAGGCGGAAGAACAAACCCAGAAAAAGTAGCTAACGAGTAATCGAAAAAATCCTTCGATTGTTTTTCTTTTTCTTTGTT

mRNA sequence

GAAAATTCCCATCAGTCCATCATCCATTTCAAATTCCCATTTCAACTCATTGTCTCTTTTGCTTTTGTTCTCTTCTCTTCTCGCTCTCGCAATCAATTTTTCATTTTCATTTTCATTTCTATTTTCTACTTTTCTTTCATCCCTTTAATCCTAAATTCCAGTTTCTCGTCGGCTGCTGATCGATTTCGTTTCGATTTCTGTTCGAACAAGCTTCTGATTCACTGGCTATTCTAATCATCTCGACTCTGTGATTTTTCTTTTCGTTTTTTTTTTTTTGTCTGTTTGATGGGAAAGAAGAAAACCCAGAAGACTAAGCAGATTGCAGTCGCCATAGCTGAAACCTCCACCTCCAAATTACCCGATGATGGCGGCGACGGCCAATCCGTACGGCCCAGGAAGAGAGGCCGACCTCGTAAGATCCTCGATGAACCACAGAACGAACAGGATAGCCAGAAACTGCCTTCGCCGCCGCCGGAAGTTGCAGATAAACCGCAGGAGAAGAAGGCGAAAACCACCAGCGATGAGCCGCCGCCGCCGGCTTCCTTGGAAGGAGCTTCGACGCGAGAACAAGAACAGGAAGAACGCAAATCGGGAGATGGGTTGAGAAGCAGAGGAAGGCGGAAGAACAAACCCAGAAAAAGTAGCTAACGAGTAATCGAAAAAATCCTTCGATTGTTTTTCTTTTTCTTTGTT

Coding sequence (CDS)

ATGGGAAAGAAGAAAACCCAGAAGACTAAGCAGATTGCAGTCGCCATAGCTGAAACCTCCACCTCCAAATTACCCGATGATGGCGGCGACGGCCAATCCGTACGGCCCAGGAAGAGAGGCCGACCTCGTAAGATCCTCGATGAACCACAGAACGAACAGGATAGCCAGAAACTGCCTTCGCCGCCGCCGGAAGTTGCAGATAAACCGCAGGAGAAGAAGGCGAAAACCACCAGCGATGAGCCGCCGCCGCCGGCTTCCTTGGAAGGAGCTTCGACGCGAGAACAAGAACAGGAAGAACGCAAATCGGGAGATGGGTTGAGAAGCAGAGGAAGGCGGAAGAACAAACCCAGAAAAAGTAGCTAA

Protein sequence

MGKKKTQKTKQIAVAIAETSTSKLPDDGGDGQSVRPRKRGRPRKILDEPQNEQDSQKLPSPPPEVADKPQEKKAKTTSDEPPPPASLEGASTREQEQEERKSGDGLRSRGRRKNKPRKSS

Homology

[Close]

BLAST of Lcy01g017140 vs. ExPASy TrEMBL
Match: A0A6J1KLK8 (uncharacterized protein LOC111496353 OS=Cucurbita maxima OX=3661 GN=LOC111496353 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.3e-30
Identity = 90/123 (73.17%), Postives = 100/123 (81.30%), Query Frame = 0


Query: 1   MGKKKTQKTKQIAVAIAETSTSKLPDDG---GDGQSVRPRKRGRPRKILDEPQNEQDSQK 60
           MGKKKTQKTKQI+VAIAETSTSKLPDDG   G GQS +PRKRGRPRK+LDEP +  D + 
Sbjct: 33  MGKKKTQKTKQISVAIAETSTSKLPDDGGGHGGGQSEQPRKRGRPRKVLDEPPD--DKKL 92

Query: 61  LPSPPPEVADKPQEKKAKTTSDEPPPPASLEGASTREQEQEERKSGDGLRSRGRRKNKPR 120
           LP P  +VADKP +KK KTT DE  PP S+EGAS ++QE EE KSGDG RSRGRRKNKPR
Sbjct: 93  LPPPAADVADKPLQKKGKTTGDE--PPISMEGAS-KQQESEEPKSGDGSRSRGRRKNKPR 150

[Close]

BLAST of Lcy01g017140 vs. ExPASy TrEMBL
Match: A0A5A7VIE6 (Zinc finger and BTB domain-containing protein 47 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005800 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.3e-29
Identity = 87/123 (70.73%), Postives = 99/123 (80.49%), Query Frame = 0


Query: 1   MGKKKTQKTKQIAVAIAETSTSKLPDDGGDGQSVRPRKRGRPRKILDEPQNEQDSQKLPS 60
           MGKKKTQKTK+IAVAIAETSTSKL DD G GQS++PRKRGRPRK+LDE QNEQ+++KLP 
Sbjct: 1   MGKKKTQKTKEIAVAIAETSTSKLADD-GIGQSIQPRKRGRPRKVLDEQQNEQENKKLPP 60

Query: 61  PP---PEVADKPQEKKAKTTSDEPPPPASLEGASTREQEQEERKSGDGLRSRGRRKNKPR 120
           PP   PEV + P EKK K T DEPPP +  EG+     +QEE K+GDG RSRGRRKNKPR
Sbjct: 61  PPPLLPEVEENPPEKKIKATVDEPPPGSVKEGS-----KQEEPKTGDGSRSRGRRKNKPR 117

[Close]

BLAST of Lcy01g017140 vs. ExPASy TrEMBL
Match: A0A0A0LRH2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361610 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 8.4e-26
Identity = 80/120 (66.67%), Postives = 94/120 (78.33%), Query Frame = 0


Query: 1   MGKKKTQKTKQIAVAIAETSTSKLPDDGGDGQSVRPRKRGRPRKILDEPQNEQDSQKLPS 60
           MGKKKTQKTK+IAVAIAETSTSKL DDG  GQ ++PRKRGRPRK+L+E QNEQ+S+K P 
Sbjct: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIIGQPIQPRKRGRPRKVLEEQQNEQESKKPPP 60

Query: 61  PPPEVADKPQEKKAKTTSDEPPPPASLEGASTREQEQEERKSGDGLRSRGRRKNKPRKSS 120
           P  EVA+ P EKK K T DE    + +EG+     ++EE K+GDG RSRGRRKNKPRKSS
Sbjct: 61  PLLEVAENPPEKKIKGTVDEAALGSMIEGS-----KEEEPKTGDGSRSRGRRKNKPRKSS 115

[Close]

BLAST of Lcy01g017140 vs. ExPASy TrEMBL
Match: A0A7N2KSD2 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-06
Identity = 57/138 (41.30%), Postives = 82/138 (59.42%), Query Frame = 0


Query: 1   MGKKKTQKTKQIAVAIAETSTSKLPDDG-GDGQSVRPRKRGRPRKILDEPQN----EQDS 60
           MGKKK QKTK+++VAIAE S +   D+G    QS  PRKRGRPRKI+++P++    E++S
Sbjct: 1   MGKKKPQKTKELSVAIAEASIT--GDEGQQQPQSQTPRKRGRPRKIIEKPESQDKKEEES 60

Query: 61  QKLPSPPPEVADKPQEKKAKTTSDEPPPPASLE--------GASTREQEQEER-----KS 120
           + +     +  ++ Q K+ KT+ +E       E        GAS +E++Q E+     K 
Sbjct: 61  ESVAKEAEDTTNESQSKRVKTSEEEEEEQPKGEGSSASMGLGASKKEEDQTEKREVLPKE 120

[Close]

BLAST of Lcy01g017140 vs. ExPASy TrEMBL
Match: A0A2I4DSB7 (ataxin-8-like OS=Juglans regia OX=51240 GN=LOC108982990 PE=4 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 7.4e-06
Identity = 50/127 (39.37%), Postives = 75/127 (59.06%), Query Frame = 0


Query: 1   MGKKKTQKTKQIAVAIAETSTS-KLPDDGGDGQSVRPRKRGRPRKILDEPQNEQDSQKLP 60
           MGKKK QKTK ++VAIAE S++     +    Q   PRKRGRPRKI+++P+++ + ++ P
Sbjct: 1   MGKKKPQKTKALSVAIAEASSAGDETQEKPQPQPQTPRKRGRPRKIIEKPESKDEKEEKP 60

Query: 61  S---PPPEVADKPQEKKAKTTSDEPPPPASLEGASTREQEQEERKSGDGL---RSRGRRK 120
           +      E   + Q KK  T  +E            ++Q+Q+++  G+GL   RSR RRK
Sbjct: 61  ASGEAEEETTSESQSKKVNTGDEEQKEQQPEHQHQHQQQQQQQQLKGEGLSEKRSRARRK 120

[Close]

BLAST of Lcy01g017140 vs. NCBI nr
Match: KAG7020516.1 (hypothetical protein SDJN02_17201, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.1 bits (362), Expect = 8.1e-31
Identity = 91/123 (73.98%), Postives = 101/123 (82.11%), Query Frame = 0


Query: 1   MGKKKTQKTKQIAVAIAETSTSKLPDDG---GDGQSVRPRKRGRPRKILDEPQNEQDSQK 60
           MGKKKTQKTKQI+VAIAETSTSKLPDDG   G GQSV+PRKRGRPRK+LDEP    D +K
Sbjct: 1   MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDEP---PDDKK 60

Query: 61  LPSPPPEVADKPQEKKAKTTSDEPPPPASLEGASTREQEQEERKSGDGLRSRGRRKNKPR 120
           LP PP +VADKP +KK K+T DEPP   S+EGAS ++ E EE KSGDG RSRGRRKNKPR
Sbjct: 61  LPPPPADVADKPLQKKGKSTGDEPPD--SMEGAS-KQHESEEPKSGDGSRSRGRRKNKPR 117

[Close]

BLAST of Lcy01g017140 vs. NCBI nr
Match: XP_023002541.1 (uncharacterized protein LOC111496353 [Cucurbita maxima])

HSP 1 Score: 141.0 bits (354), Expect = 6.8e-30
Identity = 90/123 (73.17%), Postives = 100/123 (81.30%), Query Frame = 0


Query: 1   MGKKKTQKTKQIAVAIAETSTSKLPDDG---GDGQSVRPRKRGRPRKILDEPQNEQDSQK 60
           MGKKKTQKTKQI+VAIAETSTSKLPDDG   G GQS +PRKRGRPRK+LDEP +  D + 
Sbjct: 33  MGKKKTQKTKQISVAIAETSTSKLPDDGGGHGGGQSEQPRKRGRPRKVLDEPPD--DKKL 92

Query: 61  LPSPPPEVADKPQEKKAKTTSDEPPPPASLEGASTREQEQEERKSGDGLRSRGRRKNKPR 120
           LP P  +VADKP +KK KTT DE  PP S+EGAS ++QE EE KSGDG RSRGRRKNKPR
Sbjct: 93  LPPPAADVADKPLQKKGKTTGDE--PPISMEGAS-KQQESEEPKSGDGSRSRGRRKNKPR 150

[Close]

BLAST of Lcy01g017140 vs. NCBI nr
Match: XP_023537340.1 (uncharacterized protein LOC111798433 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 140.6 bits (353), Expect = 8.9e-30
Identity = 89/123 (72.36%), Postives = 100/123 (81.30%), Query Frame = 0


Query: 1   MGKKKTQKTKQIAVAIAETSTSKLPDDG---GDGQSVRPRKRGRPRKILDEPQNEQDSQK 60
           MGKKKTQKTKQI+VAIAE STSKLPDDG   G GQSV+PRKRGRPRK+LDEP +  D + 
Sbjct: 1   MGKKKTQKTKQISVAIAEISTSKLPDDGGGHGGGQSVQPRKRGRPRKVLDEPPD--DKKL 60

Query: 61  LPSPPPEVADKPQEKKAKTTSDEPPPPASLEGASTREQEQEERKSGDGLRSRGRRKNKPR 120
           LP PP +VADKP +KK K+T DE  PP S+EGAS ++ E EE KSGDG RSRGRRKNKPR
Sbjct: 61  LPPPPADVADKPLQKKGKSTGDE--PPISMEGAS-KQHESEEPKSGDGSRSRGRRKNKPR 118

[Close]

BLAST of Lcy01g017140 vs. NCBI nr
Match: KAA0065239.1 (zinc finger and BTB domain-containing protein 47 [Cucumis melo var. makuwa])

HSP 1 Score: 139.0 bits (349), Expect = 2.6e-29
Identity = 87/123 (70.73%), Postives = 99/123 (80.49%), Query Frame = 0


Query: 1   MGKKKTQKTKQIAVAIAETSTSKLPDDGGDGQSVRPRKRGRPRKILDEPQNEQDSQKLPS 60
           MGKKKTQKTK+IAVAIAETSTSKL DD G GQS++PRKRGRPRK+LDE QNEQ+++KLP 
Sbjct: 1   MGKKKTQKTKEIAVAIAETSTSKLADD-GIGQSIQPRKRGRPRKVLDEQQNEQENKKLPP 60

Query: 61  PP---PEVADKPQEKKAKTTSDEPPPPASLEGASTREQEQEERKSGDGLRSRGRRKNKPR 120
           PP   PEV + P EKK K T DEPPP +  EG+     +QEE K+GDG RSRGRRKNKPR
Sbjct: 61  PPPLLPEVEENPPEKKIKATVDEPPPGSVKEGS-----KQEEPKTGDGSRSRGRRKNKPR 117

[Close]

BLAST of Lcy01g017140 vs. NCBI nr
Match: XP_038884964.1 (uncharacterized protein LOC120075548 [Benincasa hispida])

HSP 1 Score: 136.0 bits (341), Expect = 2.2e-28
Identity = 84/120 (70.00%), Postives = 98/120 (81.67%), Query Frame = 0


Query: 1   MGKKKTQKTKQIAVAIAETSTSKLPDDGGDGQSVRPRKRGRPRKILDEPQNEQDSQKLPS 60
           MGKKK QKTK+IAVAIAETS SKL DD G GQS++PRKRGRPRK+LDEPQN+Q+++KL  
Sbjct: 1   MGKKKPQKTKEIAVAIAETSASKLADD-GIGQSIQPRKRGRPRKVLDEPQNKQENKKLLP 60

Query: 61  PPPEVADKPQEKKAKTTSDEPPPPASLEGASTREQEQEERKSGDGLRSRGRRKNKPRKSS 120
           P PEVA+ P EKKAKTT D+PPP +  EG+     +Q E K+GDG RSRGRRKNKPRKSS
Sbjct: 61  PLPEVAENPPEKKAKTTVDQPPPGSMEEGS-----KQGEPKTGDGSRSRGRRKNKPRKSS 114

The following BLAST results are available for this feature:

BLAST of Lcy01g017140 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy01g017140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KLK8	3.3e-30	73.17	uncharacterized protein LOC111496353 OS=Cucurbita maxima OX=3661 GN=LOC111496353...	[more]
A0A5A7VIE6	1.3e-29	70.73	Zinc finger and BTB domain-containing protein 47 OS=Cucumis melo var. makuwa OX=...	[more]
A0A0A0LRH2	8.4e-26	66.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361610 PE=4 SV=1	[more]
A0A7N2KSD2	1.1e-06	41.30	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A2I4DSB7	7.4e-06	39.37	ataxin-8-like OS=Juglans regia OX=51240 GN=LOC108982990 PE=4 SV=2	[more]

BLAST of Lcy01g017140 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020516.1	8.1e-31	73.98	hypothetical protein SDJN02_17201, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023002541.1	6.8e-30	73.17	uncharacterized protein LOC111496353 [Cucurbita maxima]	[more]
XP_023537340.1	8.9e-30	72.36	uncharacterized protein LOC111798433 [Cucurbita pepo subsp. pepo]	[more]
KAA0065239.1	2.6e-29	70.73	zinc finger and BTB domain-containing protein 47 [Cucumis melo var. makuwa]	[more]
XP_038884964.1	2.2e-28	70.00	uncharacterized protein LOC120075548 [Benincasa hispida]	[more]

BLAST of Lcy01g017140 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..120
None	No IPR available	PANTHER	PTHR37615	NUCLEOPORIN NUP159-LIKE	coord: 1..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g017140.1	Lcy01g017140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane