![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
Lcy01g016840 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGAGGTGAAAGATCGATTATCGGCCTAGTTCTTCTTCGGTGCGTCTCTCCAGATCTCAACTTTGGTCTCCTCCTCTTGTTCAGTTCTGGAAAATTAATGTTGATGCAGCCTGGGATGCCTCTTCTACTGGCATCAGAGTGATTTGCCGGGATGATAGGGGGAGAATTTTGGGTGCCTGTTGTCAATCTCTAAATTCTTCTTTCCCTCTTCCCATGACGGAACTGAAGGCTATCATGAAAGGGGTAGAGTTTGCATCTTCCATGGGTGGGAGTAAATTGATTGTGGAGACAGATTGCCTTCAAACTTATAACTTGCTGAGTCAAGATATTGAAATCTGGAATGAAGTTGGAACTCTGGTAGATAATATTCGAAGAAGGTCTTTGTCTGGTGAGGAAATTGTTTTTTCATATGTTCCTCGTGAGTGTAATTCAATAGCAGATGCTATTGCTAAGAGAGCCAAGCGTGAAAAGTGTAATCTTGAGTGGAGAGATGATTTTCCACAGTGGCTTGTATTCCTGGTCAGTTGACCGTTTCCTTTTGCCCTTGGTGGCGTTATACAGTGTTTTTTCTTTAAAAAAAAAAGGGAAGTATATGTGCTTTTATTTTAATAGAGATGGATAAAAAAGAATTAATGCATTTGACAAATTTTCATATATGTATAAGTATAATTATAAACTATAAATTCTAGACATGTATTAGAATTTTTGATGTGTGTGTGTTTGTTTTAAAGAAAAAAGATGTTATATGTATATAAACTAATTGTAAGATATTATGTTTGATCATTTACTTTATTTTGTAGTTTACCCTAGTGAATTTTATAACACTCTCTTGACACATGTGATTATTTTATTTTATTTTTTATAACAAGGAAATGATTTTAGTTTATCATGACACGATTCAAAAAATAACTAGTAAATAAAAGAGAAAATTAATCTTAGATTTCTATCTTTGCTCATTTGGTAAATTCTTAAAACTAATTTATAAAACCTTGAATGTGTTATTGTAGTTTCAAATTCTATAATGATTATCTTCTATATATTTGTCAATCTAGCTGATATAAGATGAAAATTTCCTCGATAACTTTTTAATTATGCAGCAAGCTGATACGCAAATTGCGAACCGCAAGTGTACGGACCCAAGTTATAATATAGTGATTTAAAATCGAATGTCGTCCTCTGGATTGGTTTTCTAGTTCCCCTAATTATTAAAGGTATATTTGCCCAATTTTATTTAGAGAAAATAAGCGAGAAATATGCAAATCAATTAAAAACTAATCAAAGCAATAAAATGTGGAAACTCAATGGAGAAAGGCCTTAGGGAATTGATTTCACCTATTAGATGCATGAATTAATTTAACGAATAATTATGAACAAATTCGTAACAAGTTTATAAACCAAGGATTATGAATAATTAAAAGCCTCTCCCGAGTGCAATTAATCCTTTAAGCGAATTAAGAAATTGATATCCCTATCTAATTTCAACAATAAGCCTAAGCAATAAGAACAATCCTCATGACGATTTCTCAAGCAATTCCAAATCTCCCGATTAACGAATTACCTAAGTCATGCAATTGAGAGTCTAATCTAAACTACCCTCTCCCGAGCGATTAGTTCAGAAACAACAACATACAATCTGTGATCAAGAGATTATAAGCATTAATCAAACAATTGCATAAATAAACCGCGTTACGAAACGTCCTAAAAAACCGTAAATTAATCCATACAAACTAATGGCTACATCAAGCCCCTAAGAAACGAAATCTAGCTACTCATGATCTCTAAAATACAAGCGAAATTTGTCCCAAACATGCTTCAAATCAATACAAGAAATAAGGGAGAAAGATTAAACTCGTTGGCAGTGATTCCCGTGCGTTCCCGTCACGAACCTCTCGATCCAAGCTCCCAAAATCAAGCTCCCTCGCTCTCTGCCTTGTTCTGTCCGTTTTCTCTCTCTAGAAGTCGTTTTTCTCTCCCCAAAACAGCTCCCCCTTGACGAAAGCATCGCAAAATATAAATACTGCTGATTCTGTGTGACAGCGTCGAGACGCTGAGGACATAGCGTCGCGACGCTGTCGCGCGTACGCCCTAATTAAATCTGGAAAGTTCTCAGCGTCGAGACGCTGTGGAGGTAGCGTCTCGACTCTGCCTCGAATTTGCGCGCGTGCTGACTTGCGCCCAGCGTTGAGACGCTCCAATGGCTAGCGTCTCAACGCTAGGCCTTTAATTGATCTTCCTTTTCTATTTTCTTGGCCCGAACTTATTCTTTAGCTCCTAAATCATCGGTAAAGCTCAAAAATGTCGATTTCCATTGAAATACTTGATTCCTACAAAACAAAACCAAATAGAGATAAAAATAGCCAAATAATACTCAAGACTAACGATAAAATCATCTAAAATATGGCACAATAAATTGTGCTATCACAAGCATAAGATGGACCAAAAGTTAGTACGATTTATAGGCCAATTGTCACACACTATTTTTGGACGACATTCAAAAACACGTGAGAAGAAGATATTTTATATGGATTTCACATACAATGGCCGACAAGCGACGAATTGACTAGCTCACACCTTGGCCGTCTACGCTCGAACCCAACACCACACTGAATATTCAAACACTATTTCAAATGCACTTTCAGAAATACCTCGTCATAAGATGTTGTTGTAACACTATTAACTTCATTTAATTTTGTTTTGAATTACTAAAAACAATTACTACAAACTAATATAAATTAATTACATAAACTAAAATTATAAGCCATTGTGACATTAGTCATTAATGATTAAATAACTTAGTGAATGTATGTGAAATCCATATATATTGCTAATAGCATTAGCAATATATTTTATAGCCATGGGAGGGGCAATTATTGGAGCTGCAAAGTGCAAAAAACAAGCTCATGATTGGCAAAAGCGTCGTCGTTTTCCTCGAGCTTTTCCGACAACTTTCTGA ATGAGAGCCTGGGATGCCTCTTCTACTGGCATCAGAGTGATTTGCCGGGATGATAGGGGGAGAATTTTGGGTGCCTGTTGTCAATCTCTAAATTCTTCTTTCCCTCTTCCCATGACGGAACTGAAGGCTATCATGAAAGGGGTAGAGTTTGCATCTTCCATGGGTGGGAGTAAATTGATTGTGGAGACAGATTGCCTTCAAACTTATAACTTGCTGAGTCAAGATATTGAAATCTGGAATGAAGTTGGAACTCTGGTAGATAATATTCGAAGAAGGTCTTTGTCTGGTGAGGAAATTGTTTTTTCATATGTTCCTCGTGAGTGTAATTCAATAGCAGATGCTATTGCTAAGAGAGCCAAGCGTGAAAAGTCCATGGGAGGGGCAATTATTGGAGCTGCAAAGTGCAAAAAACAAGCTCATGATTGGCAAAAGCGTCGTCGTTTTCCTCGAGCTTTTCCGACAACTTTCTGA ATGAGAGCCTGGGATGCCTCTTCTACTGGCATCAGAGTGATTTGCCGGGATGATAGGGGGAGAATTTTGGGTGCCTGTTGTCAATCTCTAAATTCTTCTTTCCCTCTTCCCATGACGGAACTGAAGGCTATCATGAAAGGGGTAGAGTTTGCATCTTCCATGGGTGGGAGTAAATTGATTGTGGAGACAGATTGCCTTCAAACTTATAACTTGCTGAGTCAAGATATTGAAATCTGGAATGAAGTTGGAACTCTGGTAGATAATATTCGAAGAAGGTCTTTGTCTGGTGAGGAAATTGTTTTTTCATATGTTCCTCGTGAGTGTAATTCAATAGCAGATGCTATTGCTAAGAGAGCCAAGCGTGAAAAGTCCATGGGAGGGGCAATTATTGGAGCTGCAAAGTGCAAAAAACAAGCTCATGATTGGCAAAAGCGTCGTCGTTTTCCTCGAGCTTTTCCGACAACTTTCTGA MRAWDASSTGIRVICRDDRGRILGACCQSLNSSFPLPMTELKAIMKGVEFASSMGGSKLIVETDCLQTYNLLSQDIEIWNEVGTLVDNIRRRSLSGEEIVFSYVPRECNSIADAIAKRAKREKSMGGAIIGAAKCKKQAHDWQKRRRFPRAFPTTF Homology
BLAST of Lcy01g016840 vs. ExPASy TrEMBL
Match: A0A2P6R2K8 (Putative ribonuclease H-like domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0437761 PE=4 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 4.9e-10 Identity = 41/115 (35.65%), Postives = 62/115 (53.91%), Query Frame = 0
BLAST of Lcy01g016840 vs. ExPASy TrEMBL
Match: A0A2P6SD65 (Putative ribonuclease H-like domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0339311 PE=4 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 5.5e-09 Identity = 40/115 (34.78%), Postives = 60/115 (52.17%), Query Frame = 0
BLAST of Lcy01g016840 vs. ExPASy TrEMBL
Match: A0A5B6VSY9 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_022621 PE=4 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 3.5e-08 Identity = 35/115 (30.43%), Postives = 63/115 (54.78%), Query Frame = 0
BLAST of Lcy01g016840 vs. ExPASy TrEMBL
Match: A0A6P5RZ31 (uncharacterized protein LOC110751579 OS=Prunus avium OX=42229 GN=LOC110751579 PE=4 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 6.0e-08 Identity = 34/110 (30.91%), Postives = 58/110 (52.73%), Query Frame = 0
BLAST of Lcy01g016840 vs. ExPASy TrEMBL
Match: A0A7N2RC67 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 6.0e-08 Identity = 40/115 (34.78%), Postives = 60/115 (52.17%), Query Frame = 0
BLAST of Lcy01g016840 vs. NCBI nr
Match: XP_042985441.1 (uncharacterized protein LOC122314103 [Carya illinoinensis]) HSP 1 Score: 76.6 bits (187), Expect = 2.1e-10 Identity = 41/116 (35.34%), Postives = 62/116 (53.45%), Query Frame = 0
BLAST of Lcy01g016840 vs. NCBI nr
Match: PRQ40599.1 (putative ribonuclease H-like domain-containing protein [Rosa chinensis]) HSP 1 Score: 74.3 bits (181), Expect = 1.0e-09 Identity = 41/115 (35.65%), Postives = 62/115 (53.91%), Query Frame = 0
BLAST of Lcy01g016840 vs. NCBI nr
Match: XP_030970592.1 (uncharacterized protein LOC115990972 [Quercus lobata]) HSP 1 Score: 73.9 bits (180), Expect = 1.3e-09 Identity = 42/120 (35.00%), Postives = 66/120 (55.00%), Query Frame = 0
BLAST of Lcy01g016840 vs. NCBI nr
Match: XP_042974894.1 (uncharacterized protein LOC122306534 [Carya illinoinensis]) HSP 1 Score: 72.8 bits (177), Expect = 3.0e-09 Identity = 41/117 (35.04%), Postives = 67/117 (57.26%), Query Frame = 0
BLAST of Lcy01g016840 vs. NCBI nr
Match: XP_024046567.1 (uncharacterized protein LOC112100924 [Citrus clementina] >XP_024950779.1 uncharacterized protein LOC112497228 [Citrus sinensis]) HSP 1 Score: 72.4 bits (176), Expect = 3.9e-09 Identity = 37/115 (32.17%), Postives = 63/115 (54.78%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|