Lcy01g016600 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g016600
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Transcription initiation factor IIF subunit beta
Location	Chr01: 38201715 .. 38211117 (+)
RNA-Seq Expression	Lcy01g016600
Synteny	Lcy01g016600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCACAAAAAAGTCAAAAATCGATACAGAGACACGTATATCAGAATCCAGATTAGATCAGTTGTACGATAATATTCTGGTATCGATTGCGTAATATCAAAGCTCCTTCCGACCACCGCCTTCCAGTTCTTTAGGGTCCAGTCCAGTTCCGTCCACGGACTCTTACGCCACCGTCGTCTGAAAAGAAAAACAGAGTTGCAGAGAATCCGCCGGCGAAAGTTTCGACCAGTGAGGGAGAGAGAGAGGGAGATTTTGCAATTTGATCGATATGGAAGACGAGCACGGCGGCGGTAGTAGCAGTAACTTGGATACAGGGAAGGCGGATAGATCAGTGTGGCTGATGAAGTGCCCGTTGCTGGTCGCCAAGTCATGGCAGTCTCATCCTCCATCCGATCCTCTTCCTCTCGCTAAGGTCATCCTTTCTCTCGATCCTCTTCAATCCGACGAGTCCTCTTCTCTCCAGGTAACCTTTAATTTAAGACATGGAATTGATGTTTACGTGGTGAACTAATTCAACTATTTTTTTGCGTTTTCTAAGTAGGTCTAGTTGTTTTTGGCTTTGAATCTTGTGAATTATGTTGTTTCGATTTCCTGATTGTGAGTTTGATCGATATCTGAAAGTGGAAGCAGAACCCTAGATTTTCATTCGTTGTAATTTTGATCCGTTGTGACGGGTAGCTTGACTCTATGATACTTGTTGCCAAGTTCTTTGACTAATTCGTCCTAGATAAGGGAAATGTCATTAGTATATTTATCTTAAGTACTGAGTTTTAGCCTCAAATTGTGCAAGAAGATTAAAGTCGTCTTTTGGACTATTTAGTTATGAACCTTAAATATTTATGGAAGGTTGCAAAAGATATGTCCTACTTGGATAATGTCTCCATTGGTGTTTGCTGTGAAACCTTGTTTATGGCTTTGGTTAAGGCCCTTACTCCCCTTGATATTTTCACTTGAAACTACATTTGGAAGGGTAAGTGCCCTAAAAGAGTTAAGATCTTCACTTGGGAGTTCCATTCACGGTGATAGTATTAATACTCAAGAAAAAATTGGAGCCAGGAACACTCTTTGTCACTCTATCTCCAAGTTCGTGCATGCAATGAAAGTGAAGGGAACAAAGTCCAGTCCACCTTTGTCTTAGTTAACAAAAAGTTTCTGCGAGTTTTTGTAGATACTTACATTTCGTTGGCCTCTCTCTCTCTCTCTCTCTAGGAGATTACTAAAAGGCTTTGCTAGTGGTGTTAGAGCTATTCTCCAATTTGTACTCCCAATTCTTTTTTCTCCCATAAAAAATCTTGGAAGTTCTTTCCCTCCACATTGAATAGTAGAAGCCTCTGGATTTGAGAAGAGGCCACGGAAAAGATTATGTGAACAGTCTTTTATTTTATTCTGGAGACACAGGCAAGATTAAATTCATTTAATAATTGGATCCATATACTAAATACATTTCTTATTCCAGTGGTGTTGCAAGTACATAATTGGATCAATCATTATATTATTCCTTGGTTGGATGACTCAATACTACAAATATTATGCATGAGATGGTAGCGATTTTTTAGCCGCCGCCGTGCTCGTCTTCCATATCTATCAAATTACAAAATTGGACTCAAGGCAGAGATGTAATAAACACATGGTTCAGTTGGAAAGTTAATTGGACTGAAGCGATTTTTTTTGCAGCTTAAGTAGAAAGGAGCGAAGTTCTCATATATTTTTTTTTGTATTGTTTGTCCTATTCAGTATTTTGTCAATTGTCTTAATGAAAATTTGGATTTTCATCACAAAAGAATAATCATTATATGTTCTGATATTTCTACAGTGCTGTTCTATATTTTCCACCCTTTTTGTTTGCTTTGGTTAGCTTGTCTTGTTGTTCTTTGGGCTTGTTATTTCTGTGTGTGTATATATATGTGTGTGTGTATATAGGATGCAAATTATTTATTTATACATATCCAGAAATAATGGAGACTGTGACTTGTGGCTCATTATTTATCTTATTTTTTCCAACACCATTTTCCCTTACATACTTCAAAATGAACCTCAGTTTAAGATGGAGATGGCTGGAACTGAGACTGGAAACGTGCCAAAAAGTTTTTCCTTAAATATGTTTAAAGACTTCGTTCCTATGTGTGTCTTTTCAGAGGCAAGTCAAGGTGAGCATCATGATCCACATTTGCAGTCCATTCTTTCTTTGACTGTGTTGTCACCCTGAATGTGGTTCTATGTGAATATTTCTGATATCCAAAGTGTTTCTTCCTCTATGTTGGTAATTGTTCTCACTGTTATGAACAGCCATTTTGACTGGATTTGTTTTATTTTATTTTAATTACATTTGTGTATTTTTTTTTAGATAAGGAGCGGGGAATTTCATTCAAATAGAAAGGAATAGAACTTAGATGAGGTATCCCTTTGTCAAGGAAGTTATAAAAAGCCTCTCCATTTTATTTAAACTAATCGAAAAGCGGCTGCGGTTACAAAAATCCCTAGAAAGAGGTGCTCCAAATGGAGATGCCATATGGGATACATTCAGTCTTAAAACTTAAAAGTATCACCAAATATCCTATTGTTTCTTTATAGGTAAATGGACTATAAAGTGCTCTAGCTGTGCTTTTCCATAAGATTTTAGCTTTTAAGTCACCAATTTGAGAGCAGTTCTGGGAGCCAAATCAGTAATATTTTTACGGAAACAGCAGTTGAGCCCAAAAGTTTTCATAAAGGATGTGACCGTTTAGCCACAAACTCACAGTGAGTGAAAAGGTGGTCAATGGTCATTAGCCTCTTCATCCTTATTGTTAGGATGGATCTAAGGGGAGGGAGTGGAAAGGATTTCTTCTTCGAATTCTATCTTGAGTGTTTTTTTTTTTTTTTTTTTTTTGATAAGAAACAACAACGACTATATATTGATCAAATCAAAAGGAACCATACAGCCTAGGGGCCAGGGGTGGAGATAACCCCTGCCCAAAAACAAACCAAAAAACTAAATCTGGAGAGCCTGCCAATTGTTAATAATCATAGACAGGCTGTAATTACAAAAAGAATTTTTGTATAGCGATATCCACCACGAAGCTGTACTTTGTACATTTTCACAAAAAATGTCTAAACTAGCATACTTTCCTTCAAACGATATGGAGTTTCTTTCCTTCCAAAGAAGCCAAAGCTTAGCCTTAAAAGCACAACTAGCTATAATCTTGGCCTTTCTCTTTGAATTCCACGCAGCCAAGCCTTCATACATCCAATCATCTATCTTTCTAGGGACACAAAAAGACAAGCCCAAGCCCAACCGATTGGCAATAAAGCTCCAAGCCTTACCCGCAAAATCGCAATGCAAAAACAAATGGTCTAACCTCTCTTCGGCCTTCGGCCTTGAGTGTTTAAACTCTTCAATGTCATGGACCAGATATGAAACTTAATTTTTTTTCAGGAACTTGCCACCACAAATGTGTTTTATCAGTAGGATACTGAACTTAGAGCAATTGGAATTGAGTCTTAAATAGTTAAGTTATCTCAATTTACCATAAAAGAGCCACTTCATTCAGTTCAGGGCCTGATAGCATTTAATTTGTTGGAAGAATGGTTCCATTAGAAATTTACATCTCTGCCTCGAGAAGTAAGTAGTACCTCTCCAGACGTCTTTGTTAAGAGACCTTTAGTATTTGAAATAGCATAAATTCTGGGGAAGGAAGTACTCAATATACTGGAATCCATTCTAGAAAACAAATTTTGCTCCGTTCCCAACTTTGAAAGGAATGCCTTTTTTCTAATAAAATAAGAATAAAGAAATGCAACGTTTTCTAATTTCAAGGCACAAGCTCCCTTCATGTTTACCTCCAATTTTCTCTGTGAAACACCCAGGAGGGATGGAACCATATTTGCTCCAAGGAATCCTCCTCTGTAAAAGACTCTCCTCGTTGACGTATCTCCATATGAATTATATATCTCTTTCTTCGTGTCCAAGATTCCCAACCCCTATGCCTCAAGTTGCGATGAGGAGGGTTATCGATTTCCACTTATCGGAATGGGCCTGCCTTGACCAAAGTTTTCTTCTTCTAAGTGATATCTCTTTGGTTCTTCTCCATAGTTTTTGAAAACATTGCTGGAATTCTAAATAGGGAGAAATAATAGTTTGGATTGATGGAGATAACCACTTGAGCCAAGCAGTTAGTTTACCATCCTTTGGGTTTGGGTTATTATCCAAATTTGCAATTTTTTTTGTCACTTTTTCCAAGATGGCTTCTGGGAGATGCAAGATTTTATGTTTTCACCTAAGGGCAGGCCAATGGAAGATTAGGGCAATGAATCATACTCACAATCATAGATGCCAACCTGTATTCTGATTTTGCTTTTCTCTATGTTGTCGTTGATGCCAACCGGGGAGGATTGGATTAAATAAGTGACAAACAGAAGCTTGCTGAAATATGTTAAGGAGCTACACATCCATTTTCTCAATACTCCCCCTCTCGGTCAGAGTTGAAAGTAATAGTCATCTACATCATGAATTTAAGAAGCATGGATCTGATCAACCCTGAAACTTTCAATATGCCCCTCTTCTCTACTTTAAACATTGGCATGGTTTGGGACTCAACAACTATAGTAGGCACTAGACAGGAAGCAGGAGAGGGGTCCCCTGACAAATTCCTCTAGAAGTGTGGATCTTGCTTCTAGGTCCTTTGTGGACAATAGCAGAATATTTAACTCAGGAAAGGTATCTCCTCATCTAACTTCTCCATTGGCTACCAAATCCTTCTTGGATGATAGCATTCAAGCGGTTCCTATCACTTTTTGTTATAAGCCATTAAGCCTCGACCAATTTTTGGGACAGCCTACATTTTCCATTCACCTCTTGTTTCTAGTAACAAGGATTTCATCAGAGACTTGTCTTCTTTCAATAAAGGCTATTTTGGAATGCATGAATCCATGTTATTTTTGTGGTTTTTTTGGTGTAAGTTTTATGTTTCTTAAAAAACAGTATAAATTCTGTGTTTCAATTTGGAAAGCTTTTTGTAATCTTCCTGGCTTGGAGCTCGACATTTCTTCCCTTTTGTAATTTTTACTATGTACTGACTTCCCTCAACCTCTCAACCAATTCCTTAGCATTTATTTTATACGAGGATGTAGTGAAACTTCTTGGTAGAACTCACTGTGACAGCATTGTTTAAGTTCTGCCGGTGCATTTGTTGATGACTCACTTTTCAAAACTGTCTTGGATCTATCTCTTCAAGTCTTTGTGAGGCCTCACTGGTATTTATGTTAGAAAGAACAAGAATGGGCCAGTTATGTAGAAGTTGTATTTCGTTTTATTTTGTATCTTGTTATGGGCCAGTTGGTTAGTTGGGCCTTGGGTCTTAGTTCGTTGGTATTTAGTCTGGGAGTTGTGCGGGAATGGTAGTCTGAATTTTGTGTAGAACTTTAATGCTTGGGAGAGTTCAACCCTCTTGAATAGGCTGAGAAATTCCAGAAGACATTTTGGCTCCATTTTGTGTTAGTTTGAATTTTCTTTGTAAGGTGATACCTCTCAGTCTTCTTTGAAAATGTGCCGTTTTCATTCTTTTTTCAACACTTCAGCAATCACGCCTCACTGTCCTGGTCTAGGAGGCTTTCAGTTTACAAGCTTTTTAGCTGCTTCATCGATACCTTCCTCCCCAAAGGTCCCTCAAGCCAACCACTTCAAGTTGAGAAAATGGGTCTTCAATGAACATTTTGGAAGACAAACCTCTTATTGTTGTTCTGTTAAAAATAACTTGCGAAAAACAATCAATTGCACTGTTCACCAACTCCTCTTCAACATTCAGGATTTTACCTTCAGCATCAATCAAGAAAGAGATAATTTAATCCATTCTTTCAGTAAATGATATCCACCTAAGGAAAAGTCTTGAGTTCTTTTCTCCCTTTTTCAGTTAGTTAGCCCACCATTTCTAGACCACATTCTCCACTCATATGTAACACACTCCAATAATTTTGGTTACATAACATATCCGAAACTTGTTGGTAACTGAGGACTTATGCTTTTCTAGGGAAATAATTAATAAAATCTAACTGGTGACATACACGAAAACCTTTCTATTGCACCAACTTTGCAAAGGATTGAAACTTTTACATATGAGTGGAGAATGTGGTCTAGAAAATGGTTTAATTACAATTTTAATCTCCAAACTTTGAGGTTTGTGTCTATTTGGTTCTTGAACTTTAATAAGTGTGTATTAGGCCTTTAAACTTTCAATTTTGTATCTAATAGTTTCCTAAACTTTTAAAGATGTCTAATAAGTCTGTAACATATTCAACATTTTTAAAAATTAACTAATCTAATGGATATAAAATTGAATTTTATGTCTAATGAGATTCTAAACTTTCAATTTGTGTCTCGTAAGTCTGTGAGTTTTAAAAAATGTCAATTTTCTTATTTAAAAAAATTTCAAATAGGTTATTTTATTAGACACAATTAAAATTTCAAGGACTTATTGAACGCAAAATTGAAAGTTTAAGGACCTATTTGACACTTTTTAAAGTTTAGAGACCTATTTGACACAAAATTGGAATTTCATGGGCCAAATAAACAAAAATTTGTAAGTTTAGTGACTAAACTTGTATTTTAACCTAATAAAAATCATTGTTGGGATAAAAGGGATGTATCACTTAGAAAAGTGATCATCACCTTGGACAAAGAGCAGTTTTTTTCTTCTTCTTCTTCTTCAACTCTTGGTGGAGGCATACTAATGTGGTTAGTGGTTTCTCTAATAAATTGTTTGAGAGAGTACGATCATGTCCAAGTTTGAATTACCTGGAGAACAAGGTTGAGAGGAATAAACTGGCTACAAAAGTTTATAATTGTTGGTTGAGCACATTTTTTACCGTTCTAATAATCACAAGGTTTATTTTGTTTTGAGTTCAACTATGGGGGACAGACATTCGAACATTTCACCTTTAGAACAAATGTATACTGTCTTTACCAATCGAGCTATGCTTGGATTGGTTGTGCAATTTAAATTTATTAGCTCCTATTTTCGTTTTTCTTGGGGGGGAGGTGGTCTCTCTTGAAAACCAGTTCCATTTAAGTTTGATAGAGATGCATGCATCATAGTCAGCTAATCAATTATCATTTTGAGTGTTCTTTTGTAGGTAAGGTGTCAATGGAAGGGAAAGTGGAACATAAATTCGATATGAAGCCTCATAGTGAAAATCTTGAAATGTATGGGAAATTGTGCCGTGAAAGGACAAACAAATCCATGGTTAAGAATAGACAAATTCAAGTACATCATCAAGAGCCTTTTCTTCATACTTTCCTCAAGTCCTTTTGACATTCCTTGTTTGCAGTCAATTTTACATTTTACGTTCCCCTGATGTGTTGATAAGGTGATAGACAATGACCGTGGAGTGCATATGAGGCCAATGCCTGGCATGATTGGTTTGATCAGTACAACTTCAAAGGTATATCTTTTCTCTGCTTTTACTTTCATCATCCTTCTGAACCTTCGTGTTCGAAGTATGATTTGATGATCAATCATTTGTGGCAGGAAAAGAAGAAGGTGGCGCCAGTTAAACAATCAGATGTAAAAAGAACTAGAAGGGATCGTGGGGAACTGGAAGATATAATGTTCAAGCTATTTGAAAGACAGCCAAATTGGGCCCTAAAGCAGCTTGTCCAAGAGACTGATCAACCTGCAGTATGTCTACTTATCGTTTCCTCATTTATCGATGTTTTTCGAAACAATACTCTTTTTCTCACTATTTTCGTGAAACTGTCGCCACAGAAGATATTTAATTATAAAATCAATATATTTCTCTCTCGACATACACCAGAGGCCATACAACCTTCTCTTCCCCAGAACTCAGAATTTCATTATAGATCATACACAAGAGATTATAAATTTTGTGCCCAACTACTTTTGTTGCCAGTGTTCATCATATTTATTCTTGGATTTGGTGTTGTATAAAATATTGTCAAAGTTCTCAGAACAATTTGCTGTTCCTTCTCTTTGCAGCAATTCTTGAAAGAGATACTGAATGAGCTTTGTGTCTACAACAAGAGAGGGACTAATCAAGGAACCTATGAGCTTAAACCCGAATACAAGAAATCTGTCGAGGATACCGGCGGAGAGTAGGTTAGTCTTTGACTGTATCATTTTATATGTTCCCTTCTTTTGGGGTAGGTGGAAACGATCTGAAATAAATCTGCTAAGTAAGAAGAAAATGAGATTTTGCTTTTCTTATATTTTCATGGGAGGGAGAGATGGGGGGATGAAAAAGAAGTTGGTTTAAAATAATTGCTAGATAGCTTTATACTAAAGTGAAACCAAAGGTGAAATGAAAGTTGGGGGAAGTTCTTATGTCACGTTTATCTAATTACGTACAATGTCGGAAGTCGCAAAATGTACCTGTATAATGAATTTTATGAGCATGCGAAGATGTTGGAAAACAGAGGCCACAAACTTGATTGTTCATTGACTTTTATTTTGCCTAGCCTTTTCTAATTACTAGTCAAGGTAATTATTTTTGTCGTCCTCCAGCATAGATTGCAGTGGTGAATGGATTTTGGAAATCTTTGGCGCAGAAACTCATCCTAGATATTTAGGATGTGTTTGATTGGTGATAAAAAAAAGAATTTTAATGTATGAAGTAGTTGCCTTGAGAGAGTGAGTTCTCTTTAGAATGGTCATGTAGGATCAAGTAGTTGCCTTGAGAGAATAGTCTAGATGTGCACAAGCTAGCATGAACATTCATAGATGTTGTTGAAAAAAAAACAAGGAGTTTATTTGTTTTATTGGAAAACAAAGTTGGATTCCATGCTTTCACTGATTTCGAATGTCTTTAGTAGATTTAAAATCTGAAAACATTGTAAATATGCAAATATTGTTCTCGAAATTCACTTTCTAGGTCACAAACTTAAATCACCTGTCTAAAATATTAAAATCCTATGCATTAGTGTTTAGTTAATATGCTTGTATCTACGAGCACGTAAGTCAATTGATGTCAATTTATGTGCAACTAATCTCGTGATATAATTACTAGACTGAATATTCATAAGATTTTAATATTTTAGGTGGGTGATTATCGAGGTTTGAATTCAGGATCTCTAAAATTATTTTATATTTTTTCACTTCAAAAGTTAATTTATTTCTTTTTTTCATATTGTTGACTGGTCTGTTTTTTTTATCGGATGTCAACCTAACACGTCTTCTTGTGCATTATGTCGATATTCGGCTTTCTATAGTTCTTGATTCCAAGAAGTTATCTTCATTTATGGCCTGTTTAGAGATCGAATGAATAAAATATGAAGCTACTATATGTAGTGGGATTTTGAATTGTTCTGTTATGATGTTCCCAGCCAATTAGTAGGCGTTTCATTCTTGTCATCATCTCCTCCAAGTGGAGGATGTAAAATTTAACTCATCGAAATATCTCCAATGTGTCCTGAAT

mRNA sequence

TCACAAAAAAGTCAAAAATCGATACAGAGACACGTATATCAGAATCCAGATTAGATCAGTTGTACGATAATATTCTGGTATCGATTGCGTAATATCAAAGCTCCTTCCGACCACCGCCTTCCAGTTCTTTAGGGTCCAGTCCAGTTCCGTCCACGGACTCTTACGCCACCGTCGTCTGAAAAGAAAAACAGAGTTGCAGAGAATCCGCCGGCGAAAGTTTCGACCAGTGAGGGAGAGAGAGAGGGAGATTTTGCAATTTGATCGATATGGAAGACGAGCACGGCGGCGGTAGTAGCAGTAACTTGGATACAGGGAAGGCGGATAGATCAGTGTGGCTGATGAAGTGCCCGTTGCTGGTCGCCAAGTCATGGCAGTCTCATCCTCCATCCGATCCTCTTCCTCTCGCTAAGGTCATCCTTTCTCTCGATCCTCTTCAATCCGACGAGTCCTCTTCTCTCCAGTTTAAGATGGAGATGGCTGGAACTGAGACTGGAAACGTGCCAAAAAGTTTTTCCTTAAATATGTTTAAAGACTTCGTTCCTATGTGTGTCTTTTCAGAGGCAAGTCAAGGTAAGGTGTCAATGGAAGGGAAAGTGGAACATAAATTCGATATGAAGCCTCATAGTGAAAATCTTGAAATGTATGGGAAATTGTGCCGTGAAAGGACAAACAAATCCATGGTTAAGAATAGACAAATTCAAGTGATAGACAATGACCGTGGAGTGCATATGAGGCCAATGCCTGGCATGATTGGTTTGATCAGTACAACTTCAAAGGAAAAGAAGAAGGTGGCGCCAGTTAAACAATCAGATGTAAAAAGAACTAGAAGGGATCGTGGGGAACTGGAAGATATAATGTTCAAGCTATTTGAAAGACAGCCAAATTGGGCCCTAAAGCAGCTTGTCCAAGAGACTGATCAACCTGCACAATTCTTGAAAGAGATACTGAATGAGCTTTGTGTCTACAACAAGAGAGGGACTAATCAAGGAACCTATGAGCTTAAACCCGAATACAAGAAATCTGTCGAGGATACCGGCGGAGAGTAGGTTAGTCTTTGACTGTATCATTTTATATGTTCCCTTCTTTTGGGGTAGGTGGAAACGATCTGAAATAAATCTGCTAAGTAAGAAGAAAATGAGATTTTGCTTTTCTTATATTTTCATGGGAGGGAGAGATGGGGGGATGAAAAAGAAGTTGGTTTAAAATAATTGCTAGATAGCTTTATACTAAAGTGAAACCAAAGGTGAAATGAAAGTTGGGGGAAGTTCTTATGTCACGTTTATCTAATTACGTACAATGTCGGAAGTCGCAAAATGTACCTGTATAATGAATTTTATGAGCATGCGAAGATGTTGGAAAACAGAGGCCACAAACTTGATTGTTCATTGACTTTTATTTTGCCTAGCCTTTTCTAATTACTAGTCAAGGTAATTATTTTTGTCGTCCTCCAGCATAGATTGCAGTGGTGAATGGATTTTGGAAATCTTTGGCGCAGAAACTCATCCTAGATATTTAGGATGTGTTTGATTGGTGATAAAAAAAAGAATTTTAATGTATGAAGTAGTTGCCTTGAGAGAGTGAGTTCTCTTTAGAATGGTCATGTAGGATCAAGTAGTTGCCTTGAGAGAATAGTCTAGATGTGCACAAGCTAGCATGAACATTCATAGATGTTGTTGAAAAAAAAACAAGGAGTTTATTTGTTTTATTGGAAAACAAAGTTGGATTCCATGCTTTCACTGATTTCGAATGTCTTTAGTAGATTTAAAATCTGAAAACATTGTAAATATGCAAATATTGTTCTCGAAATTCACTTTCTAGGTCACAAACTTAAATCACCTGTCTAAAATATTAAAATCCTATGCATTAGTGTTTAGTTAATATGCTTGTATCTACGAGCACGTAAGTCAATTGATGTCAATTTATGTGCAACTAATCTCGTGATATAATTACTAGACTGAATATTCATAAGATTTTAATATTTTAGGTGGGTGATTATCGAGGTTTGAATTCAGGATCTCTAAAATTATTTTATATTTTTTCACTTCAAAAGTTAATTTATTTCTTTTTTTCATATTGTTGACTGGTCTGTTTTTTTTATCGGATGTCAACCTAACACGTCTTCTTGTGCATTATGTCGATATTCGGCTTTCTATAGTTCTTGATTCCAAGAAGTTATCTTCATTTATGGCCTGTTTAGAGATCGAATGAATAAAATATGAAGCTACTATATGTAGTGGGATTTTGAATTGTTCTGTTATGATGTTCCCAGCCAATTAGTAGGCGTTTCATTCTTGTCATCATCTCCTCCAAGTGGAGGATGTAAAATTTAACTCATCGAAATATCTCCAATGTGTCCTGAAT

Coding sequence (CDS)

ATGGAAGACGAGCACGGCGGCGGTAGTAGCAGTAACTTGGATACAGGGAAGGCGGATAGATCAGTGTGGCTGATGAAGTGCCCGTTGCTGGTCGCCAAGTCATGGCAGTCTCATCCTCCATCCGATCCTCTTCCTCTCGCTAAGGTCATCCTTTCTCTCGATCCTCTTCAATCCGACGAGTCCTCTTCTCTCCAGTTTAAGATGGAGATGGCTGGAACTGAGACTGGAAACGTGCCAAAAAGTTTTTCCTTAAATATGTTTAAAGACTTCGTTCCTATGTGTGTCTTTTCAGAGGCAAGTCAAGGTAAGGTGTCAATGGAAGGGAAAGTGGAACATAAATTCGATATGAAGCCTCATAGTGAAAATCTTGAAATGTATGGGAAATTGTGCCGTGAAAGGACAAACAAATCCATGGTTAAGAATAGACAAATTCAAGTGATAGACAATGACCGTGGAGTGCATATGAGGCCAATGCCTGGCATGATTGGTTTGATCAGTACAACTTCAAAGGAAAAGAAGAAGGTGGCGCCAGTTAAACAATCAGATGTAAAAAGAACTAGAAGGGATCGTGGGGAACTGGAAGATATAATGTTCAAGCTATTTGAAAGACAGCCAAATTGGGCCCTAAAGCAGCTTGTCCAAGAGACTGATCAACCTGCACAATTCTTGAAAGAGATACTGAATGAGCTTTGTGTCTACAACAAGAGAGGGACTAATCAAGGAACCTATGAGCTTAAACCCGAATACAAGAAATCTGTCGAGGATACCGGCGGAGAGTAG

Protein sequence

MEDEHGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

Homology

[Close]

BLAST of Lcy01g016600 vs. ExPASy Swiss-Prot
Match: O94424 (Transcription initiation factor IIF subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tfg2 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 9.0e-22
Identity = 82/259 (31.66%), Postives = 127/259 (49.03%), Query Frame = 0


Query: 2   EDEHGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDES 61
           ED+     + +LD G+    VWL+K P  +   W S P  D   L  V +  D +Q    
Sbjct: 12  EDDRYEDDAGDLDLGQIGSRVWLVKIPKFLMDKWNSIPEDDAANLGCVRVKNDEIQLLLQ 71

Query: 62  SSLQFKMEMAGTETGNVPKSFSLNMFKDFV-PMCVFSE----ASQGKVSMEGKVEHKFDM 121
           +S          E  +VPK ++L +   FV    VF E    +S    ++ G V H+ ++
Sbjct: 72  NS---------PENADVPKIYNLRVMNKFVRNSYVFRESETSSSMKSTALVGTVAHECNV 131

Query: 122 KPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLIS-TTSKEKKKV 181
            P     + Y ++ ++R   +    R++Q+ID DRG  +   PG +G  S +T+   + V
Sbjct: 132 SPVIN--DDYRRVMQKRALAASAPKRKVQMID-DRGGSLL-APGTLGSRSRSTTSFIRNV 191

Query: 182 APVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNK 241
            P     +K +R  R EL DI+FK FE    W LK L +   QP  +LKE+L+ + + NK
Sbjct: 192 KPRTGEGLKNSRIPRNELLDILFKCFEDYEYWTLKGLREYVKQPEVYLKEVLDSIAILNK 251

Query: 242 RGTNQGTYELKPEYKKSVE 255
           RG     Y LKPEYK +++
Sbjct: 252 RGPYALKYSLKPEYKGTMD 257

[Close]

BLAST of Lcy01g016600 vs. ExPASy Swiss-Prot
Match: Q54KT7 (General transcription factor IIF subunit 2 OS=Dictyostelium discoideum OX=44689 GN=gtf2f2 PE=3 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 3.0e-17
Identity = 69/250 (27.60%), Postives = 113/250 (45.20%), Query Frame = 0


Query: 1   MEDEHGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDE 60
           M +E        ++T  AD  VWL+K P  +++SWQ         + +  +    ++  +
Sbjct: 1   MSEEKNDALVGEVNTDNADNQVWLIKVPKFLSESWQK--------IGQGEIGQIHIKGGD 60

Query: 61  SSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPHS 120
           + SL +     G + G   +  +     D  P+ +FSE   G +++EG +  + D+K   
Sbjct: 61  NISLSY-----GPDVGQEFQLITTANTLDNQPLKIFSEDKDGALALEGNIGLRCDIKIDV 120

Query: 121 ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQ 180
           E+   Y  L + R  K   K R  QVID                +ST    +K     K+
Sbjct: 121 ES-PQYRDLMKSRHTKYNTKTRMTQVIDESELFTPTLFDANKVKVSTVGITQK-----KK 180

Query: 181 SDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 240
           S  K+ +    E+ D++F  F  + +  LK L   T+QP   LK IL ++C+ NKRG   
Sbjct: 181 STDKKEKLPEDEVLDLIFSAFRAEKHLDLKTLESFTEQPKNHLKTILEKVCILNKRGPYH 231

Query: 241 GTYELKPEYK 251
             YELKPE++
Sbjct: 241 HLYELKPEFR 231

[Close]

BLAST of Lcy01g016600 vs. ExPASy Swiss-Prot
Match: Q2T9L9 (General transcription factor IIF subunit 2 OS=Bos taurus OX=9913 GN=GTF2F2 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.7e-17
Identity = 71/247 (28.74%), Postives = 116/247 (46.96%), Query Frame = 0


Query: 12  NLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMA 71
           +L   K +  VWL+K P  +++ W   P    +   ++  +    Q     S     ++A
Sbjct: 8   DLTGAKQNTGVWLVKVPKYLSQQWAKAPGRGEVGKLRIAKN----QGRTEVSFTLNEDLA 67

Query: 72  GT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGKVSMEGKVEHKFDMKPHSENL 131
              + G  P S S      FV        + VF+E+S  K+S+EG V  + + +P +   
Sbjct: 68  NIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAAN-- 127

Query: 132 EMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDV 191
           E Y +L R +  +S    R  Q +D     + +P+      I    K+K+        D 
Sbjct: 128 ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKE--------DG 187

Query: 192 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTY 251
           KR R D+  + D++F  FE+   + LK LV  T QP  +LK+IL E+ V N +G ++ T+
Sbjct: 188 KRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVSYLKDILKEIGVQNVKGIHKNTW 240

[Close]

BLAST of Lcy01g016600 vs. ExPASy Swiss-Prot
Match: Q01750 (General transcription factor IIF subunit 2 OS=Rattus norvegicus OX=10116 GN=Gtf2f2 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.7e-17
Identity = 72/247 (29.15%), Postives = 115/247 (46.56%), Query Frame = 0


Query: 12  NLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMA 71
           +L   K +  VWL+K P  +++ W   P    +   ++  +    Q     S     ++A
Sbjct: 8   DLTGAKQNTGVWLVKVPKYLSQQWAKAPGRGEVGKLRIAKN----QGRTEVSFTLNEDLA 67

Query: 72  GT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGKVSMEGKVEHKFDMKPHSENL 131
              + G  P S S      FV        + VF+E+S  K+S+EG V  + + +P +   
Sbjct: 68  NIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAAS-- 127

Query: 132 EMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDV 191
           E Y KL R +  +S    R  Q  D     + +P+      I    K+K+        D 
Sbjct: 128 ENYMKLKRLQIEESSKPVRLSQQADKVVTTNYKPVANHQYNIEYERKKKE--------DG 187

Query: 192 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTY 251
           KR R D+  + D++F  FE+   + LK LV  T QP  +LKEIL E+ + N +G ++ T+
Sbjct: 188 KRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHKNTW 240

[Close]

BLAST of Lcy01g016600 vs. ExPASy Swiss-Prot
Match: P41900 (General transcription factor IIF subunit 2 OS=Drosophila melanogaster OX=7227 GN=TfIIFbeta PE=2 SV=2)

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-16
Identity = 72/260 (27.69%), Postives = 123/260 (47.31%), Query Frame = 0


Query: 12  NLDTGKADRSVWLMKCPLLVAKSWQSHPPS----------DPLPLAKVILSLDP----LQ 71
           +LD   A R VWL+K P  +A+ W+  P +           P   A+V LSL P    L 
Sbjct: 15  DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLALD 74

Query: 72  SDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVP-------MCVFSEASQGKVSMEGKV 131
            +E    +  ++++      V K  +L +F    P           ++    K+ MEG++
Sbjct: 75  PEEKIPTEHILDVS-----QVTKQ-TLGVFSHMAPSDGKENSTTSAAQPDNEKLYMEGRI 134

Query: 132 EHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSK 191
             K + +P ++N   Y KL  E   K+    R++Q ID    +     P      +   +
Sbjct: 135 VQKLECRPIADN--CYMKLKLESIRKASEPQRRVQPIDK---IVQNFKPVKDHAHNIEYR 194

Query: 192 EKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNEL 251
           E+KK      ++ K+ R D+  + D++F  FE+   + +K LV+ T+QP  +LKEIL ++
Sbjct: 195 ERKK------AEGKKARDDKNAVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDV 254

[Close]

BLAST of Lcy01g016600 vs. ExPASy TrEMBL
Match: A0A5A7VAJ9 (Transcription initiation factor IIF subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005300 PE=3 SV=1)

HSP 1 Score: 512.3 bits (1318), Expect = 1.2e-141
Identity = 255/260 (98.08%), Postives = 259/260 (99.62%), Query Frame = 0


Query: 1   MEDEHG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60
           MED+HG GGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSD
Sbjct: 1   MEDDHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120
           ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH
Sbjct: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120

Query: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVK 180
           SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGM+GLIS+TSKEKKKVAPVK
Sbjct: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180

Query: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240
           QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN
Sbjct: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240

Query: 241 QGTYELKPEYKKSVEDTGGE 260
           QGTYELKPEYKKSVEDTGGE
Sbjct: 241 QGTYELKPEYKKSVEDTGGE 260

[Close]

BLAST of Lcy01g016600 vs. ExPASy TrEMBL
Match: A0A1S3BBV5 (Transcription initiation factor IIF subunit beta OS=Cucumis melo OX=3656 GN=LOC103488014 PE=3 SV=1)

HSP 1 Score: 512.3 bits (1318), Expect = 1.2e-141
Identity = 255/260 (98.08%), Postives = 259/260 (99.62%), Query Frame = 0


Query: 1   MEDEHG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60
           MED+HG GGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSD
Sbjct: 1   MEDDHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120
           ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH
Sbjct: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120

Query: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVK 180
           SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGM+GLIS+TSKEKKKVAPVK
Sbjct: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180

Query: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240
           QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN
Sbjct: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240

Query: 241 QGTYELKPEYKKSVEDTGGE 260
           QGTYELKPEYKKSVEDTGGE
Sbjct: 241 QGTYELKPEYKKSVEDTGGE 260

[Close]

BLAST of Lcy01g016600 vs. ExPASy TrEMBL
Match: A0A0A0LRL0 (Transcription initiation factor IIF subunit beta OS=Cucumis sativus OX=3659 GN=Csa_2G363560 PE=3 SV=1)

HSP 1 Score: 510.4 bits (1313), Expect = 4.5e-141
Identity = 255/260 (98.08%), Postives = 258/260 (99.23%), Query Frame = 0


Query: 1   MEDEHG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60
           MEDEHG GGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSD LPLAKVILSLDPLQSD
Sbjct: 1   MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120
           ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH
Sbjct: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120

Query: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVK 180
           SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGM+GLIS+TSKEKKKVAPVK
Sbjct: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180

Query: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240
           QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN
Sbjct: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240

Query: 241 QGTYELKPEYKKSVEDTGGE 260
           QGTYELKPEYKKSVEDTGGE
Sbjct: 241 QGTYELKPEYKKSVEDTGGE 260

[Close]

BLAST of Lcy01g016600 vs. ExPASy TrEMBL
Match: A0A6J1KP21 (Transcription initiation factor IIF subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111496301 PE=3 SV=1)

HSP 1 Score: 509.6 bits (1311), Expect = 7.6e-141
Identity = 251/259 (96.91%), Postives = 258/259 (99.61%), Query Frame = 0


Query: 1   MEDEHGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDE 60
           MEDE+GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDE
Sbjct: 1   MEDENGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDE 60

Query: 61  SSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPHS 120
           SSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGK+SMEGKVEHKFDMKPHS
Sbjct: 61  SSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPHS 120

Query: 121 ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQ 180
           ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGM+GLIS+TSK+K+KVAPVKQ
Sbjct: 121 ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKDKRKVAPVKQ 180

Query: 181 SDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 240
            +VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ
Sbjct: 181 PEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 240

Query: 241 GTYELKPEYKKSVEDTGGE 260
           GTYELKPEYKKSVEDTGGE
Sbjct: 241 GTYELKPEYKKSVEDTGGE 259

[Close]

BLAST of Lcy01g016600 vs. ExPASy TrEMBL
Match: A0A6J1GH97 (Transcription initiation factor IIF subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111454191 PE=3 SV=1)

HSP 1 Score: 508.4 bits (1308), Expect = 1.7e-140
Identity = 250/259 (96.53%), Postives = 258/259 (99.61%), Query Frame = 0


Query: 1   MEDEHGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDE 60
           MEDE+GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDE
Sbjct: 1   MEDENGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDE 60

Query: 61  SSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPHS 120
           SSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGK+SMEGKVEHKFDMKPHS
Sbjct: 61  SSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPHS 120

Query: 121 ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQ 180
           ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGM+GLIS+TSK+K+KVAPVKQ
Sbjct: 121 ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKDKRKVAPVKQ 180

Query: 181 SDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 240
            +VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ
Sbjct: 181 PEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 240

Query: 241 GTYELKPEYKKSVEDTGGE 260
           GTYELKPEYKKSVEDTGG+
Sbjct: 241 GTYELKPEYKKSVEDTGGD 259

[Close]

BLAST of Lcy01g016600 vs. NCBI nr
Match: XP_038884084.1 (transcription initiation factor IIF subunit beta-like [Benincasa hispida])

HSP 1 Score: 514.2 bits (1323), Expect = 6.4e-142
Identity = 254/259 (98.07%), Postives = 259/259 (100.00%), Query Frame = 0


Query: 1   MEDEHGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDE 60
           MEDE+GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSDE
Sbjct: 1   MEDENGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDE 60

Query: 61  SSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPHS 120
           SSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGK+SMEGKVEHKFDMKPHS
Sbjct: 61  SSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPHS 120

Query: 121 ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQ 180
           ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGM+GLIS+TSKEKKKVAPVKQ
Sbjct: 121 ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQ 180

Query: 181 SDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 240
           SDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ
Sbjct: 181 SDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 240

Query: 241 GTYELKPEYKKSVEDTGGE 260
           GTYELKPEYKKSVEDTGGE
Sbjct: 241 GTYELKPEYKKSVEDTGGE 259

[Close]

BLAST of Lcy01g016600 vs. NCBI nr
Match: XP_008444765.1 (PREDICTED: transcription initiation factor IIF subunit beta-like [Cucumis melo] >KAA0065193.1 transcription initiation factor IIF subunit beta-like [Cucumis melo var. makuwa])

HSP 1 Score: 512.3 bits (1318), Expect = 2.4e-141
Identity = 255/260 (98.08%), Postives = 259/260 (99.62%), Query Frame = 0


Query: 1   MEDEHG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60
           MED+HG GGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSD
Sbjct: 1   MEDDHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120
           ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH
Sbjct: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120

Query: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVK 180
           SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGM+GLIS+TSKEKKKVAPVK
Sbjct: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180

Query: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240
           QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN
Sbjct: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240

Query: 241 QGTYELKPEYKKSVEDTGGE 260
           QGTYELKPEYKKSVEDTGGE
Sbjct: 241 QGTYELKPEYKKSVEDTGGE 260

[Close]

BLAST of Lcy01g016600 vs. NCBI nr
Match: XP_004152667.1 (transcription initiation factor IIF subunit beta [Cucumis sativus] >KGN62646.1 hypothetical protein Csa_021785 [Cucumis sativus])

HSP 1 Score: 510.4 bits (1313), Expect = 9.3e-141
Identity = 255/260 (98.08%), Postives = 258/260 (99.23%), Query Frame = 0


Query: 1   MEDEHG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60
           MEDEHG GGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSD LPLAKVILSLDPLQSD
Sbjct: 1   MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120
           ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH
Sbjct: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120

Query: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVK 180
           SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGM+GLIS+TSKEKKKVAPVK
Sbjct: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180

Query: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240
           QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN
Sbjct: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240

Query: 241 QGTYELKPEYKKSVEDTGGE 260
           QGTYELKPEYKKSVEDTGGE
Sbjct: 241 QGTYELKPEYKKSVEDTGGE 260

[Close]

BLAST of Lcy01g016600 vs. NCBI nr
Match: XP_023002475.1 (transcription initiation factor IIF subunit beta [Cucurbita maxima])

HSP 1 Score: 509.6 bits (1311), Expect = 1.6e-140
Identity = 251/259 (96.91%), Postives = 258/259 (99.61%), Query Frame = 0


Query: 1   MEDEHGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDE 60
           MEDE+GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDE
Sbjct: 1   MEDENGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDE 60

Query: 61  SSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPHS 120
           SSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGK+SMEGKVEHKFDMKPHS
Sbjct: 61  SSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPHS 120

Query: 121 ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQ 180
           ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGM+GLIS+TSK+K+KVAPVKQ
Sbjct: 121 ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKDKRKVAPVKQ 180

Query: 181 SDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 240
            +VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ
Sbjct: 181 PEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 240

Query: 241 GTYELKPEYKKSVEDTGGE 260
           GTYELKPEYKKSVEDTGGE
Sbjct: 241 GTYELKPEYKKSVEDTGGE 259

[Close]

BLAST of Lcy01g016600 vs. NCBI nr
Match: XP_022951326.1 (transcription initiation factor IIF subunit beta [Cucurbita moschata] >XP_023537305.1 transcription initiation factor IIF subunit beta [Cucurbita pepo subsp. pepo] >KAG6585564.1 hypothetical protein SDJN03_18297, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020478.1 tfg2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 508.4 bits (1308), Expect = 3.5e-140
Identity = 250/259 (96.53%), Postives = 258/259 (99.61%), Query Frame = 0


Query: 1   MEDEHGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDE 60
           MEDE+GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDE
Sbjct: 1   MEDENGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDE 60

Query: 61  SSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPHS 120
           SSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGK+SMEGKVEHKFDMKPHS
Sbjct: 61  SSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPHS 120

Query: 121 ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQ 180
           ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGM+GLIS+TSK+K+KVAPVKQ
Sbjct: 121 ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKDKRKVAPVKQ 180

Query: 181 SDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 240
            +VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ
Sbjct: 181 PEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQ 240

Query: 241 GTYELKPEYKKSVEDTGGE 260
           GTYELKPEYKKSVEDTGG+
Sbjct: 241 GTYELKPEYKKSVEDTGGD 259

[Close]

BLAST of Lcy01g016600 vs. TAIR 10
Match: AT1G75510.1 (Transcription initiation factor IIF, beta subunit )

HSP 1 Score: 353.2 bits (905), Expect = 1.8e-97
Identity = 182/269 (67.66%), Postives = 213/269 (79.18%), Query Frame = 0


Query: 1   MEDEHGGGSSSNLDTGKADRSVWLMKCPLLVAKSW--------QSHPPSD-PLPLAKVIL 60
           MED H      NLD  K+DRS+WLMKCP++V K+W         S   SD P  +AK++ 
Sbjct: 1   MEDIH------NLDIEKSDRSIWLMKCPVVVDKAWHKIAASSSSSFASSDSPPDMAKIVR 60

Query: 61  SLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVE 120
            +DPL+ D  S  +FKM M G E GN+PK ++LNMF DFVPM  FS+ +QG  + EGKV+
Sbjct: 61  EVDPLRDD--SPPEFKMYMVGAEYGNMPKCYALNMFTDFVPMGGFSDVNQGCAAAEGKVD 120

Query: 121 HKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKE 180
           HKFDMKP+ E +E Y +LCRERT+K+MVKNRQIQVIDNDRGVHMRPMPGM+GL+S+ SKE
Sbjct: 121 HKFDMKPYGETIEEYARLCRERTSKAMVKNRQIQVIDNDRGVHMRPMPGMLGLVSSNSKE 180

Query: 181 KKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELC 240
           K+K  PVKQ++VKRTRRDRGELE IMFKLFE QPNW LKQLVQETDQPAQFLKEILNELC
Sbjct: 181 KRKPPPVKQTEVKRTRRDRGELEAIMFKLFEGQPNWTLKQLVQETDQPAQFLKEILNELC 240

Query: 241 VYNKRGTNQGTYELKPEYKKSVE-DTGGE 260
           VYNKRG+NQGTYELKPEYKKS E DTGG+
Sbjct: 241 VYNKRGSNQGTYELKPEYKKSAEDDTGGQ 261

[Close]

BLAST of Lcy01g016600 vs. TAIR 10
Match: AT3G52270.1 (Transcription initiation factor IIF, beta subunit )

HSP 1 Score: 298.1 bits (762), Expect = 6.7e-81
Identity = 152/251 (60.56%), Postives = 196/251 (78.09%), Query Frame = 0


Query: 13  LDTGKADRSVWLMKCPLLVAKSWQSHP-------PSDPL-PLAKVILSLDPLQSDESSSL 72
           L+TG A+RS+ LMK P LVA S QSH        P DP  P AKVIL +DPL + E    
Sbjct: 23  LETGLAERSMLLMKAPSLVASSLQSHSFPDDPYRPDDPYRPDAKVILGVDPL-AHEDEGT 82

Query: 73  QFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPHSENLE 132
           QF ME+A  ++GN+P+ ++L+M KDF+PM VF E+S GK+S+EGK+++KFDM+PH+EN+E
Sbjct: 83  QFVMELARADSGNMPRRYTLDMSKDFIPMNVFCESSDGKMSVEGKIKNKFDMRPHNENIE 142

Query: 133 MYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVK 192
            YG+LCRERTNK M KNRQIQVIDN RG+HMRPMPGMI  I T + EKKK+   + S++K
Sbjct: 143 SYGRLCRERTNKYMGKNRQIQVIDNARGMHMRPMPGMI--IPTAAPEKKKLTN-RTSEMK 202

Query: 193 RTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYE 252
           RTRRDR E+E++MF LFERQ NW L+ L+QETDQP QFLK++L +LC+YN +G+NQGTYE
Sbjct: 203 RTRRDRREMEEVMFNLFERQSNWTLRLLIQETDQPEQFLKDLLKDLCIYNNKGSNQGTYE 262

Query: 253 LKPEYKKSVED 256
           LKPEYKK+ ++
Sbjct: 263 LKPEYKKATQE 269

The following BLAST results are available for this feature:

BLAST of Lcy01g016600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O94424	9.0e-22	31.66	Transcription initiation factor IIF subunit beta OS=Schizosaccharomyces pombe (s...	[more]
Q54KT7	3.0e-17	27.60	General transcription factor IIF subunit 2 OS=Dictyostelium discoideum OX=44689 ...	[more]
Q2T9L9	6.7e-17	28.74	General transcription factor IIF subunit 2 OS=Bos taurus OX=9913 GN=GTF2F2 PE=2 ...	[more]
Q01750	6.7e-17	29.15	General transcription factor IIF subunit 2 OS=Rattus norvegicus OX=10116 GN=Gtf2...	[more]
P41900	1.1e-16	27.69	General transcription factor IIF subunit 2 OS=Drosophila melanogaster OX=7227 GN...	[more]

BLAST of Lcy01g016600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VAJ9	1.2e-141	98.08	Transcription initiation factor IIF subunit beta OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3BBV5	1.2e-141	98.08	Transcription initiation factor IIF subunit beta OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A0A0LRL0	4.5e-141	98.08	Transcription initiation factor IIF subunit beta OS=Cucumis sativus OX=3659 GN=C...	[more]
A0A6J1KP21	7.6e-141	96.91	Transcription initiation factor IIF subunit beta OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1GH97	1.7e-140	96.53	Transcription initiation factor IIF subunit beta OS=Cucurbita moschata OX=3662 G...	[more]

BLAST of Lcy01g016600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884084.1	6.4e-142	98.07	transcription initiation factor IIF subunit beta-like [Benincasa hispida]	[more]
XP_008444765.1	2.4e-141	98.08	PREDICTED: transcription initiation factor IIF subunit beta-like [Cucumis melo] ...	[more]
XP_004152667.1	9.3e-141	98.08	transcription initiation factor IIF subunit beta [Cucumis sativus] >KGN62646.1 h...	[more]
XP_023002475.1	1.6e-140	96.91	transcription initiation factor IIF subunit beta [Cucurbita maxima]	[more]
XP_022951326.1	3.5e-140	96.53	transcription initiation factor IIF subunit beta [Cucurbita moschata] >XP_023537...	[more]

BLAST of Lcy01g016600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75510.1	1.8e-97	67.66	Transcription initiation factor IIF, beta subunit	[more]
AT3G52270.1	6.7e-81	60.56	Transcription initiation factor IIF, beta subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 185..252 e-value: 3.9E-35 score: 121.8
IPR040450	TFIIF beta subunit, HTH domain	PFAM	PF02270	TFIIF_beta	coord: 187..250 e-value: 1.2E-20 score: 73.4
IPR040504	TFIIF, beta subunit, N-terminal	PFAM	PF17683	TFIIF_beta_N	coord: 20..134 e-value: 2.6E-6 score: 28.1
IPR003196	Transcription initiation factor IIF, beta subunit	PANTHER	PTHR10445	GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2	coord: 8..256
None	No IPR available	PANTHER	PTHR10445:SF2	TRANSCRIPTION INITIATION FACTOR IIF, BETA SUBUNIT	coord: 8..256
None	No IPR available	CDD	cd07980	TFIIF_beta	coord: 12..118 e-value: 2.13139E-20 score: 81.9896
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 185..251
IPR011039	Transcription Factor IIF, Rap30/Rap74, interaction	SUPERFAMILY	50916	Rap30/74 interaction domains	coord: 10..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g016600.1	Lcy01g016600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006413	translational initiation
biological_process	GO:0006366	transcription by RNA polymerase II
cellular_component	GO:0005674	transcription factor TFIIF complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003743	translation initiation factor activity