Lcy01g016160 (gene) Sponge gourd (P93075) v1

Overview
NameLcy01g016160
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionDNA-directed RNA polymerase subunit
LocationChr01: 37704154 .. 37708468 (+)
RNA-Seq ExpressionLcy01g016160
SyntenyLcy01g016160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTATTCTCGTCGGCATGACTTTTTGTTTTGCAATTTATGTGGAACAATGCTATCATTCAGCTCAACGAGATATGTTGAGTGTCCTTTGTGCAAGTCCAAGCGAAGTGCAAAAGGTGGACGTACTCTACTCTAGTTAGTTACTCTTAGTTTTTCATTTTGGATAATTGTTCAATCCCACATTACTTAGATGAATGAGTGTTCAATTGGTATGCCTTGCAATAATTACACTCATTCGGTCGGTTTAATCTTATTTCATTGTGTGTAGTTGATTTTTCCTTCATGTTTATCCAAGTAAAAATGTGAAAAGCATTGTTTAATTTTTCATTTTTTATCTCTAAGTTTATATTCTTTTATCTCTTTACTAGAATAGATTTGTGTCAATGATTTTATAAAGGCCCATGGTTAGGGAGGCTCTAAGAAGCACGAATATGACATGACATGGACACGGTGACATGTCATTTTTTTTTTAAATCTAGGACACGGACATGTTTAGTAAAATATATATCATTTTTATACAAGAAGGAAATTCAAAATCAATAAGTTTATGCATTTGTATGCTTAAAAAAATGATTTTAATGTATTTCAGTCTTAAAATTTATTATTCTTTGTCATTTAGTAATGTGTCTATTTAGTATACTTAACAAGTGTTTGATATGGACCTATATTGACTTTGTACAACGAGTGTTTGCCACATATCAATTGTACTAACAAGTGTCCGATACGTGTCCAACAATTGTCAGAGTGTCCAAGTGTCCGATACGGACACTCTAGCCAAACTAAAGTGTCTGTGCTTCTTAGGGGAGGCTTATGGGTCTATTGTCTTTCACTTCATTGGTGTCAACCCCTTTAGCCATAAGGGTACTAAAAGTCTTGTTTATACAAACATCAAAAATTTATTTCTTAAAGAAGCCTGGAACGTTGACATGATGTCGTGCTTAAGAATATCTCAAGTTTTCGTTAAGAATTTTAAGGAAAAACCATCCGGACCCATAGATTGGCCTTGACTGGACTAGAAATATCCCTTGGAACTATATGCTAAATAAGAGCCTGCGTGAGAGAATTACCAGCTGTAGAGATAGAACTCCAACTCAAACCATGGAAGATGTCACTTCAATATTTTGGGTTTTCCTCACTGAAAGGCTTAGTATGGCAGACTGCTGCTAGGATTCTGAAAATTGGAACCTCAACTTCAGAAGGCAATTGACTGGTGAAGGTGAATGAATAGGCTGAGTCGTTCACGATTTTGAAAGATTGTTTTCCAAACTAGGAAAAGATTGACCTCGAAACTCTGATTTGATATCTTCTAAGATCTATTTCACCTGTCTCCTTAGCATGGATGAGTTCCATAATTGTTTCATTACAAAAGTTATATGGAAGAAGAGATACCCCAAGAAGGTTAAATTCTTCATTTGGGATGTTGATCTTGGTAGTTAACACTATAAGTATGTTTCAACAAAAGATTCCTGGCATTTGTCTTAATCCAGGCTAGTGTAATATGTGGAAGAAATCTTCAAGATCATGAGCAAATACAGCCGAAAAATTCTGACCTTTAGAAGACGTGATTTCTGACTTCATTTCATCTTGGTAGTTAACACTATAAGTATGTTTCAACAAAAGATTCCTGGCATTTGTCTTAATCCAGGCTAGTGTAATATGTGGAAGAAATCTTCAAGATCATGAGCAAATACAGCCGAAAAATTCTGACCTTTAGAAGACGTGATTTCTGACTTCATTTCATCTCAATATTTTAGGTGGATTGGAAATTAGAGGAACTTCTATCATTGACGACAAAGCTTGTACTACATGCTTTTTTTGGATAAGAAACAAATAACATATTCAAAAGCAAGTCACCACAAAAGTAGGCTCAGGCGCTGGAGTAGAGGAAAATCTCGCCGAAGAGGCACAAAAGAGGAGAGCCTACCAATTTTTTATGGTTTGTATACCACCAAGAGGCAGTATGTTGCACATTATTACAAAAAGAACTCTTATCTTCGAAGATATATGGTTTCGCTTCATCCAAAGATGCAAAAGGAGACCTTCAGTTGCGCTGTTCTATATGATCTTAGCTTTGCGTTAAAACAGCCCAGGGAACCTCCATTAGCCAATCCTCCACCTGTCTAGGTTGGCATATAGGCGAGCCAAGTTTGCTCAAAATGAAAGACCACCCCACCAGAGACAAAGGGGACAGTGAAGGAAAAGGTGATCCTAGGATTCGCACTCCTTGTAACAAAAGCAAAAGTGGCACACCGAGGGGGACAAAGGCCTATTTTGGGAACTTCCTTTGCAGTTTGTCTGGAGTATTGAGACTCCAATAAGCTACTACATTTTGCTACAAGTGAGGCTTTATTACCTGGAACAAAGTGACAAGCCACCAATATGTCTCGCATATATTAGGCACAATACCAGCATAGACAAGACTGTATCAAGGAATGCGTAGAAGTTATAATTAAGCAGTATTTATGTTAAATTTCTGGTACCACTTAATAGGATTAATACAAATTGTAGAAACCTCTTGTTGATAATTTATGGAAAGGAATTACATAGTTAGATTTTCAAGAGGTCTGGAATCTCTCACAAGCTCCCAACAATTTTCCAGATGCCCTTCCTCTCTCTTACTTAGTTACTTAATAAAAAGATACATAACTTCCTTTTACGTGTGAGAACTAACTCAACCCCTATCTCCAATGTAAGTACCTCAGAAACAACTAATTACAGAAATTAACATGAATACTTCTTATTATGACTTCTACTTACAGATATTAACATAAATACTGCTTAACCATGACTTCTACTCATCCATCGATATGGTCTTGTCTGTTTTTGCTAGTATCGCGCCTAATGTATGTGTGACATATTGGTGGCCTATCTTAAAGCTCATCCAGAAAAAAATGCCTGCATAGTAAAGACGGGCTTCTATAAATGAAATCGAATGTTTCTTGATTGCCATTACATGAAGAAAGGACTAAACACTAACTACTAACAGCTGTAGCTAAATAGGAGTTCTGTGTCAAGCTTGGTTTTTTGCCATTGTGGGGGTATTTGGCTAGAAAGGAACAATAAGATTTTTAGAGGTGTTAGAGAGATCTAGAGTCAAGCTTTAAGAGTTGGTTAGATTTAACAATTTGTTATGGATGTCCATTAATCAGGTTTTTTTTTTTGTAATTACCAGCTTGGTCTCATTCTCTTAGACTGGGATCCCTCGTTCTCTTAGATTAGGGTCCCTTCCAATAATTAGAACTGGAAATCCTTTTGGTGGGTTTTTTTTAATACCAGTACATTCTTTCATATGTCTCAACAAAAGCTCGGTTTCTTACTTAAAAAAAAAACAGCTAAGCAGTGACTGAAAAATGTTGAACTCAACAAAATACTCAAGACCGGTTTGTCTTATTCAAGGGCCTGAGTGCCATCACGAGCTGCCTCAATGTTATTCTACTTCTTGAAGTTTGTGTCTGAAGGATATACATCAAATTATTTTAGAATTTGAGAGCTTTGCTTTACGTTTAATGGTTTTGTTGAAAGAAGTAGGCATCTTATTATCTTCACGTATTGAAATTGAAAAAATTGTAATCCCCATCTTTGTTTCCATGATCTGAGATATTGAAGTCGTGTAAATGCAGTTGAGAAATTATTGTTTTAATATTTTATGCACTATTTTAGTAGACATCTCTAACATTTGTTTGGTTTATTTCAGAGGTCGTCGGTAAGGAAATAAGTTACACAGTTACTGCTGAGGTATGCCTTTTAAATGATAAATATCATCCCCATGCTTCTTCTATTTCTAGCTCTCAGACATAGTATCATCTCTGCAACACGTCATTGACGATGTTTATGAACTGGATACTCTGGAAATTTCTGCTACATTTGTGATATTTGCTAGGATTGATTCTGGATGAACTCCGGAGGAATCTGTATATTGGGTTGAATAAGAAACTGGGACCAACCCACCTCAAGCCATGATCTAATCTTGATATGCCTCGTGAAAATTTGCAGGAAATTAGAAAGCAGTTGGGAATTTCATTAATTGATGAAGAGAAAGTGCAACTATCAAAGGTAGTAGGAGGAGGAAAAGAAGTCTATAATATGATATTGTGCTTGGGATGTGTAGCTAGTCCACTAATATCAAGCTGTGTCATGTTTGACAGGAAAGGAGGAGATGTGAAAAATGTGGGAATGATGAAGCTTGGTTTGAGAGCAGACAGGTACTTTACAAACATAAAGAACACACTCTTGAGATTTCTTTCTTTCTCCCATTAGAAAAGAGTCCTAAGTTTGAGGGCAATTTCAATAAAAATGCAGATGAGATCAGCTGA

mRNA sequence

ATGGCTTATTCTCGTCGGCATGACTTTTTGTTTTGCAATTTATGTGGAACAATGCTATCATTCAGCTCAACGAGATATGTTGAGTGTCCTTTGTGCAAGTCCAAGCGAAGTGCAAAAGAGGTCGTCGGTAAGGAAATAAGTTACACAGTTACTGCTGAGGAAATTAGAAAGCAGTTGGGAATTTCATTAATTGATGAAGAGAAAGTGCAACTATCAAAGGAAAGGAGGAGATGTGAAAAATGTGGGAATGATGAAGCTTGGTTTGAGAGCAGACAGGTACTTTACAAACATAAAGAACACACTCTTGAGATTTCTTTCTTTCTCCCATTAGAAAAGAGTCCTAAGTTTGAGGGCAATTTCAATAAAAATGCAGATGAGATCAGCTGA

Coding sequence (CDS)

ATGGCTTATTCTCGTCGGCATGACTTTTTGTTTTGCAATTTATGTGGAACAATGCTATCATTCAGCTCAACGAGATATGTTGAGTGTCCTTTGTGCAAGTCCAAGCGAAGTGCAAAAGAGGTCGTCGGTAAGGAAATAAGTTACACAGTTACTGCTGAGGAAATTAGAAAGCAGTTGGGAATTTCATTAATTGATGAAGAGAAAGTGCAACTATCAAAGGAAAGGAGGAGATGTGAAAAATGTGGGAATGATGAAGCTTGGTTTGAGAGCAGACAGGTACTTTACAAACATAAAGAACACACTCTTGAGATTTCTTTCTTTCTCCCATTAGAAAAGAGTCCTAAGTTTGAGGGCAATTTCAATAAAAATGCAGATGAGATCAGCTGA

Protein sequence

MAYSRRHDFLFCNLCGTMLSFSSTRYVECPLCKSKRSAKEVVGKEISYTVTAEEIRKQLGISLIDEEKVQLSKERRRCEKCGNDEAWFESRQVLYKHKEHTLEISFFLPLEKSPKFEGNFNKNADEIS
Homology
[Close]
BLAST of Lcy01g016160 vs. ExPASy TrEMBL
Match: A0A6J1CTE6 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111014043 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.1e-42
Identity = 86/93 (92.47%), Postives = 92/93 (98.92%), Query Frame = 0 

Query: 1  MAYSRRHDFLFCNLCGTMLSFSSTRYVECPLCKSKRSAKEVVGKEISYTVTAEEIRKQLG 60
          MAYSR HDFLFCNLCGTMLSFSST+YVECPLCKS+RSAKE++G+EISYTVTAEEIRKQLG
Sbjct: 1  MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60

Query: 61 ISLIDEEKVQLSKERRRCEKCGNDEAWFESRQV 94
          ISLIDEEKVQLSKERRRCEKCGNDEAWFESRQ+
Sbjct: 61 ISLIDEEKVQLSKERRRCEKCGNDEAWFESRQM 93

[Close]
BLAST of Lcy01g016160 vs. ExPASy TrEMBL
Match: A0A6J1HDS4 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111463020 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.4e-41
Identity = 85/93 (91.40%), Postives = 91/93 (97.85%), Query Frame = 0 

Query: 1  MAYSRRHDFLFCNLCGTMLSFSSTRYVECPLCKSKRSAKEVVGKEISYTVTAEEIRKQLG 60
          MAYS  HDFLFCNLCGTMLSFSST+YVECPLCKS+RSAKE+VG+EISYTVTAEEIRKQLG
Sbjct: 1  MAYSGGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61 ISLIDEEKVQLSKERRRCEKCGNDEAWFESRQV 94
          ISLIDEEK+QLSKERRRCEKCGNDEAWFESRQ+
Sbjct: 61 ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQM 93

[Close]
BLAST of Lcy01g016160 vs. ExPASy TrEMBL
Match: A0A6J1KC19 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111492509 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 4.4e-41
Identity = 84/93 (90.32%), Postives = 91/93 (97.85%), Query Frame = 0 

Query: 1  MAYSRRHDFLFCNLCGTMLSFSSTRYVECPLCKSKRSAKEVVGKEISYTVTAEEIRKQLG 60
          MAYSR HDFLFCNLCGTMLSFSST+YVECPLCKS+RSAK ++G+EISYTVTAEEIRKQLG
Sbjct: 1  MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKGIIGREISYTVTAEEIRKQLG 60

Query: 61 ISLIDEEKVQLSKERRRCEKCGNDEAWFESRQV 94
          ISLIDEEK+QLSKERRRCEKCGNDEAWFESRQ+
Sbjct: 61 ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQM 93

[Close]
BLAST of Lcy01g016160 vs. ExPASy TrEMBL
Match: A0A0A0LKC4 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_2G345940 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.2e-40
Identity = 83/93 (89.25%), Postives = 90/93 (96.77%), Query Frame = 0 

Query: 1  MAYSRRHDFLFCNLCGTMLSFSSTRYVECPLCKSKRSAKEVVGKEISYTVTAEEIRKQLG 60
          MAYSR HDFLFCNLCGTMLSF ST+YVECP CKS+RSAKE+VG+EISYTVTAEEIRKQLG
Sbjct: 1  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61 ISLIDEEKVQLSKERRRCEKCGNDEAWFESRQV 94
          ISLIDEEK+QL+KERRRCEKCGNDEAWFESRQ+
Sbjct: 61 ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQM 93

[Close]
BLAST of Lcy01g016160 vs. ExPASy TrEMBL
Match: A0A1S3BBZ4 (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103488399 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 8.4e-40
Identity = 83/93 (89.25%), Postives = 89/93 (95.70%), Query Frame = 0 

Query: 1  MAYSRRHDFLFCNLCGTMLSFSSTRYVECPLCKSKRSAKEVVGKEISYTVTAEEIRKQLG 60
          MAYSR HDFLFCNLCGTMLSF ST+YVECPLCKSKRSAKE+ G+EISYTVTAEEIRKQLG
Sbjct: 1  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60

Query: 61 ISLIDEEKVQLSKERRRCEKCGNDEAWFESRQV 94
          ISLI EEK+QL+KERRRCEKCGNDEAWFESRQ+
Sbjct: 61 ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQM 93

[Close]
BLAST of Lcy01g016160 vs. NCBI nr
Match: XP_022144336.1 (DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia] >XP_022144337.1 DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia])

HSP 1 Score: 181.0 bits (458), Expect = 6.4e-42
Identity = 86/93 (92.47%), Postives = 92/93 (98.92%), Query Frame = 0 

Query: 1  MAYSRRHDFLFCNLCGTMLSFSSTRYVECPLCKSKRSAKEVVGKEISYTVTAEEIRKQLG 60
          MAYSR HDFLFCNLCGTMLSFSST+YVECPLCKS+RSAKE++G+EISYTVTAEEIRKQLG
Sbjct: 1  MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60

Query: 61 ISLIDEEKVQLSKERRRCEKCGNDEAWFESRQV 94
          ISLIDEEKVQLSKERRRCEKCGNDEAWFESRQ+
Sbjct: 61 ISLIDEEKVQLSKERRRCEKCGNDEAWFESRQM 93

[Close]
BLAST of Lcy01g016160 vs. NCBI nr
Match: KAG6598510.1 (DNA-directed RNA polymerase I subunit RPA12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 180.3 bits (456), Expect = 1.1e-41
Identity = 86/93 (92.47%), Postives = 92/93 (98.92%), Query Frame = 0 

Query: 1   MAYSRRHDFLFCNLCGTMLSFSSTRYVECPLCKSKRSAKEVVGKEISYTVTAEEIRKQLG 60
           MAYSR HDFLFCNLCGTMLSFSST+YVECPLCKS+RSAKE+VG+EISYTVTAEEIRKQLG
Sbjct: 31  MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLG 90

Query: 61  ISLIDEEKVQLSKERRRCEKCGNDEAWFESRQV 94
           ISLIDEEK+QLSKERRRCEKCGNDEAWFESRQ+
Sbjct: 91  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQM 123

[Close]
BLAST of Lcy01g016160 vs. NCBI nr
Match: XP_023546814.1 (DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita pepo subsp. pepo] >KAG7029447.1 DNA-directed RNA polymerase I subunit RPA12 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 180.3 bits (456), Expect = 1.1e-41
Identity = 86/93 (92.47%), Postives = 92/93 (98.92%), Query Frame = 0 

Query: 1  MAYSRRHDFLFCNLCGTMLSFSSTRYVECPLCKSKRSAKEVVGKEISYTVTAEEIRKQLG 60
          MAYSR HDFLFCNLCGTMLSFSST+YVECPLCKS+RSAKE+VG+EISYTVTAEEIRKQLG
Sbjct: 1  MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61 ISLIDEEKVQLSKERRRCEKCGNDEAWFESRQV 94
          ISLIDEEK+QLSKERRRCEKCGNDEAWFESRQ+
Sbjct: 61 ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQM 93

[Close]
BLAST of Lcy01g016160 vs. NCBI nr
Match: XP_038886279.1 (DNA-directed RNA polymerase I subunit RPA12-like isoform X1 [Benincasa hispida] >XP_038886280.1 DNA-directed RNA polymerase I subunit RPA12-like isoform X1 [Benincasa hispida] >XP_038886281.1 DNA-directed RNA polymerase I subunit RPA12-like isoform X1 [Benincasa hispida] >XP_038886282.1 DNA-directed RNA polymerase I subunit RPA12-like isoform X1 [Benincasa hispida])

HSP 1 Score: 178.3 bits (451), Expect = 4.1e-41
Identity = 84/93 (90.32%), Postives = 92/93 (98.92%), Query Frame = 0 

Query: 1  MAYSRRHDFLFCNLCGTMLSFSSTRYVECPLCKSKRSAKEVVGKEISYTVTAEEIRKQLG 60
          MAYSR HDFLFCNLCGTMLSFSST+YV+CPLCKS+RSAKE++G+EISYTVTAEEIRKQLG
Sbjct: 1  MAYSRGHDFLFCNLCGTMLSFSSTKYVQCPLCKSQRSAKEIIGREISYTVTAEEIRKQLG 60

Query: 61 ISLIDEEKVQLSKERRRCEKCGNDEAWFESRQV 94
          ISLIDEEK+QLSKERRRCEKCGNDEAWFESRQ+
Sbjct: 61 ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQM 93

[Close]
BLAST of Lcy01g016160 vs. NCBI nr
Match: XP_022962626.1 (DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita moschata] >XP_022962627.1 DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita moschata])

HSP 1 Score: 177.6 bits (449), Expect = 7.0e-41
Identity = 85/93 (91.40%), Postives = 91/93 (97.85%), Query Frame = 0 

Query: 1  MAYSRRHDFLFCNLCGTMLSFSSTRYVECPLCKSKRSAKEVVGKEISYTVTAEEIRKQLG 60
          MAYS  HDFLFCNLCGTMLSFSST+YVECPLCKS+RSAKE+VG+EISYTVTAEEIRKQLG
Sbjct: 1  MAYSGGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61 ISLIDEEKVQLSKERRRCEKCGNDEAWFESRQV 94
          ISLIDEEK+QLSKERRRCEKCGNDEAWFESRQ+
Sbjct: 61 ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQM 93

[Close]
BLAST of Lcy01g016160 vs. TAIR 10
Match: AT3G25940.1 (TFIIB zinc-binding protein )

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-22
Identity = 50/95 (52.63%), Postives = 70/95 (73.68%), Query Frame = 0 

Query: 1  MAYSRRHDFLFCNLCGTMLSFSSTRYVECPLCKSKRSAKEVVGKEISYTVTAEEIRKQLG 60
          M  SR  +FLFCNLCGTML   ST+Y ECP CK+ R+AK+++ KEI+YTV+AE+IR++LG
Sbjct: 1  MEKSRESEFLFCNLCGTMLVLKSTKYAECPHCKTTRNAKDIIDKEIAYTVSAEDIRRELG 60

Query: 61 ISLIDEE---KVQLSKERRRCEKCGNDEAWFESRQ 93
          ISL  E+   + +L K ++ CEKC + E  + +RQ
Sbjct: 61 ISLFGEKTQAEAELPKIKKACEKCQHPELVYTTRQ 95

[Close]
BLAST of Lcy01g016160 vs. TAIR 10
Match: AT1G20065.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: TFIIB zinc-binding protein (TAIR:AT3G25940.1). )

HSP 1 Score: 84.7 bits (208), Expect = 5.8e-17
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 1  MAYSRRHDFLFCNLCGTMLSFSSTRYVECPLCKSKRSAKEVVGKEISYTVTAEEIRKQLG 60
          M  SR  D LFCNLCGTML   ST+Y ECPLC++ R+ KE++ K ++YTVT E+IR++LG
Sbjct: 1  MEKSRESDILFCNLCGTMLVLKSTKYAECPLCETTRNGKEIIDKNLAYTVTTEDIRRELG 60

Query: 61 IS 63
          IS
Sbjct: 61 IS 62

[Close]
BLAST of Lcy01g016160 vs. TAIR 10
Match: AT1G20065.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: TFIIB zinc-binding protein (TAIR:AT3G25940.1). )

HSP 1 Score: 72.8 bits (177), Expect = 2.3e-13
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 0 

Query: 1  MAYSRRHDFLFCNLCGTMLSFSSTRYVECPLCKSKRSAKEVVGKEISYTVTAE 54
          M  SR  D LFCNLCGTML   ST+Y ECPLC++ R+ KE++ K ++YTVT E
Sbjct: 1  MEKSRESDILFCNLCGTMLVLKSTKYAECPLCETTRNGKEIIDKNLAYTVTTE 53

The following BLAST results are available for this feature:
BLAST of Lcy01g016160 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy01g016160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CTE63.1e-4292.47DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC1110140... [more]
A0A6J1HDS43.4e-4191.40DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC11146302... [more]
A0A6J1KC194.4e-4190.32DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111492509 ... [more]
A0A0A0LKC42.2e-4089.25DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_2G345940 P... [more]
A0A1S3BBZ48.4e-4089.25DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103488399 PE=3... [more]
BLAST of Lcy01g016160 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022144336.16.4e-4292.47DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia] >XP_02214... [more]
KAG6598510.11.1e-4192.47DNA-directed RNA polymerase I subunit RPA12, partial [Cucurbita argyrosperma sub... [more]
XP_023546814.11.1e-4192.47DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita pepo subsp. pepo] >K... [more]
XP_038886279.14.1e-4190.32DNA-directed RNA polymerase I subunit RPA12-like isoform X1 [Benincasa hispida] ... [more]
XP_022962626.17.0e-4191.40DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita moschata] >XP_022962... [more]
BLAST of Lcy01g016160 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G25940.11.6e-2252.63TFIIB zinc-binding protein [more]
AT1G20065.15.8e-1759.68FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT1G20065.22.3e-1358.49FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11239:SF19DNA-DIRECTED RNA POLYMERASE SUBUNITcoord: 1..93
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 1..93

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy01g016160.1Lcy01g016160.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006379 mRNA cleavage
biological_process GO:0006363 termination of RNA polymerase I transcription
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005736 RNA polymerase I complex
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding