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Lcy01g016160 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTATTCTCGTCGGCATGACTTTTTGTTTTGCAATTTATGTGGAACAATGCTATCATTCAGCTCAACGAGATATGTTGAGTGTCCTTTGTGCAAGTCCAAGCGAAGTGCAAAAGGTGGACGTACTCTACTCTAGTTAGTTACTCTTAGTTTTTCATTTTGGATAATTGTTCAATCCCACATTACTTAGATGAATGAGTGTTCAATTGGTATGCCTTGCAATAATTACACTCATTCGGTCGGTTTAATCTTATTTCATTGTGTGTAGTTGATTTTTCCTTCATGTTTATCCAAGTAAAAATGTGAAAAGCATTGTTTAATTTTTCATTTTTTATCTCTAAGTTTATATTCTTTTATCTCTTTACTAGAATAGATTTGTGTCAATGATTTTATAAAGGCCCATGGTTAGGGAGGCTCTAAGAAGCACGAATATGACATGACATGGACACGGTGACATGTCATTTTTTTTTTAAATCTAGGACACGGACATGTTTAGTAAAATATATATCATTTTTATACAAGAAGGAAATTCAAAATCAATAAGTTTATGCATTTGTATGCTTAAAAAAATGATTTTAATGTATTTCAGTCTTAAAATTTATTATTCTTTGTCATTTAGTAATGTGTCTATTTAGTATACTTAACAAGTGTTTGATATGGACCTATATTGACTTTGTACAACGAGTGTTTGCCACATATCAATTGTACTAACAAGTGTCCGATACGTGTCCAACAATTGTCAGAGTGTCCAAGTGTCCGATACGGACACTCTAGCCAAACTAAAGTGTCTGTGCTTCTTAGGGGAGGCTTATGGGTCTATTGTCTTTCACTTCATTGGTGTCAACCCCTTTAGCCATAAGGGTACTAAAAGTCTTGTTTATACAAACATCAAAAATTTATTTCTTAAAGAAGCCTGGAACGTTGACATGATGTCGTGCTTAAGAATATCTCAAGTTTTCGTTAAGAATTTTAAGGAAAAACCATCCGGACCCATAGATTGGCCTTGACTGGACTAGAAATATCCCTTGGAACTATATGCTAAATAAGAGCCTGCGTGAGAGAATTACCAGCTGTAGAGATAGAACTCCAACTCAAACCATGGAAGATGTCACTTCAATATTTTGGGTTTTCCTCACTGAAAGGCTTAGTATGGCAGACTGCTGCTAGGATTCTGAAAATTGGAACCTCAACTTCAGAAGGCAATTGACTGGTGAAGGTGAATGAATAGGCTGAGTCGTTCACGATTTTGAAAGATTGTTTTCCAAACTAGGAAAAGATTGACCTCGAAACTCTGATTTGATATCTTCTAAGATCTATTTCACCTGTCTCCTTAGCATGGATGAGTTCCATAATTGTTTCATTACAAAAGTTATATGGAAGAAGAGATACCCCAAGAAGGTTAAATTCTTCATTTGGGATGTTGATCTTGGTAGTTAACACTATAAGTATGTTTCAACAAAAGATTCCTGGCATTTGTCTTAATCCAGGCTAGTGTAATATGTGGAAGAAATCTTCAAGATCATGAGCAAATACAGCCGAAAAATTCTGACCTTTAGAAGACGTGATTTCTGACTTCATTTCATCTTGGTAGTTAACACTATAAGTATGTTTCAACAAAAGATTCCTGGCATTTGTCTTAATCCAGGCTAGTGTAATATGTGGAAGAAATCTTCAAGATCATGAGCAAATACAGCCGAAAAATTCTGACCTTTAGAAGACGTGATTTCTGACTTCATTTCATCTCAATATTTTAGGTGGATTGGAAATTAGAGGAACTTCTATCATTGACGACAAAGCTTGTACTACATGCTTTTTTTGGATAAGAAACAAATAACATATTCAAAAGCAAGTCACCACAAAAGTAGGCTCAGGCGCTGGAGTAGAGGAAAATCTCGCCGAAGAGGCACAAAAGAGGAGAGCCTACCAATTTTTTATGGTTTGTATACCACCAAGAGGCAGTATGTTGCACATTATTACAAAAAGAACTCTTATCTTCGAAGATATATGGTTTCGCTTCATCCAAAGATGCAAAAGGAGACCTTCAGTTGCGCTGTTCTATATGATCTTAGCTTTGCGTTAAAACAGCCCAGGGAACCTCCATTAGCCAATCCTCCACCTGTCTAGGTTGGCATATAGGCGAGCCAAGTTTGCTCAAAATGAAAGACCACCCCACCAGAGACAAAGGGGACAGTGAAGGAAAAGGTGATCCTAGGATTCGCACTCCTTGTAACAAAAGCAAAAGTGGCACACCGAGGGGGACAAAGGCCTATTTTGGGAACTTCCTTTGCAGTTTGTCTGGAGTATTGAGACTCCAATAAGCTACTACATTTTGCTACAAGTGAGGCTTTATTACCTGGAACAAAGTGACAAGCCACCAATATGTCTCGCATATATTAGGCACAATACCAGCATAGACAAGACTGTATCAAGGAATGCGTAGAAGTTATAATTAAGCAGTATTTATGTTAAATTTCTGGTACCACTTAATAGGATTAATACAAATTGTAGAAACCTCTTGTTGATAATTTATGGAAAGGAATTACATAGTTAGATTTTCAAGAGGTCTGGAATCTCTCACAAGCTCCCAACAATTTTCCAGATGCCCTTCCTCTCTCTTACTTAGTTACTTAATAAAAAGATACATAACTTCCTTTTACGTGTGAGAACTAACTCAACCCCTATCTCCAATGTAAGTACCTCAGAAACAACTAATTACAGAAATTAACATGAATACTTCTTATTATGACTTCTACTTACAGATATTAACATAAATACTGCTTAACCATGACTTCTACTCATCCATCGATATGGTCTTGTCTGTTTTTGCTAGTATCGCGCCTAATGTATGTGTGACATATTGGTGGCCTATCTTAAAGCTCATCCAGAAAAAAATGCCTGCATAGTAAAGACGGGCTTCTATAAATGAAATCGAATGTTTCTTGATTGCCATTACATGAAGAAAGGACTAAACACTAACTACTAACAGCTGTAGCTAAATAGGAGTTCTGTGTCAAGCTTGGTTTTTTGCCATTGTGGGGGTATTTGGCTAGAAAGGAACAATAAGATTTTTAGAGGTGTTAGAGAGATCTAGAGTCAAGCTTTAAGAGTTGGTTAGATTTAACAATTTGTTATGGATGTCCATTAATCAGGTTTTTTTTTTTGTAATTACCAGCTTGGTCTCATTCTCTTAGACTGGGATCCCTCGTTCTCTTAGATTAGGGTCCCTTCCAATAATTAGAACTGGAAATCCTTTTGGTGGGTTTTTTTTAATACCAGTACATTCTTTCATATGTCTCAACAAAAGCTCGGTTTCTTACTTAAAAAAAAAACAGCTAAGCAGTGACTGAAAAATGTTGAACTCAACAAAATACTCAAGACCGGTTTGTCTTATTCAAGGGCCTGAGTGCCATCACGAGCTGCCTCAATGTTATTCTACTTCTTGAAGTTTGTGTCTGAAGGATATACATCAAATTATTTTAGAATTTGAGAGCTTTGCTTTACGTTTAATGGTTTTGTTGAAAGAAGTAGGCATCTTATTATCTTCACGTATTGAAATTGAAAAAATTGTAATCCCCATCTTTGTTTCCATGATCTGAGATATTGAAGTCGTGTAAATGCAGTTGAGAAATTATTGTTTTAATATTTTATGCACTATTTTAGTAGACATCTCTAACATTTGTTTGGTTTATTTCAGAGGTCGTCGGTAAGGAAATAAGTTACACAGTTACTGCTGAGGTATGCCTTTTAAATGATAAATATCATCCCCATGCTTCTTCTATTTCTAGCTCTCAGACATAGTATCATCTCTGCAACACGTCATTGACGATGTTTATGAACTGGATACTCTGGAAATTTCTGCTACATTTGTGATATTTGCTAGGATTGATTCTGGATGAACTCCGGAGGAATCTGTATATTGGGTTGAATAAGAAACTGGGACCAACCCACCTCAAGCCATGATCTAATCTTGATATGCCTCGTGAAAATTTGCAGGAAATTAGAAAGCAGTTGGGAATTTCATTAATTGATGAAGAGAAAGTGCAACTATCAAAGGTAGTAGGAGGAGGAAAAGAAGTCTATAATATGATATTGTGCTTGGGATGTGTAGCTAGTCCACTAATATCAAGCTGTGTCATGTTTGACAGGAAAGGAGGAGATGTGAAAAATGTGGGAATGATGAAGCTTGGTTTGAGAGCAGACAGGTACTTTACAAACATAAAGAACACACTCTTGAGATTTCTTTCTTTCTCCCATTAGAAAAGAGTCCTAAGTTTGAGGGCAATTTCAATAAAAATGCAGATGAGATCAGCTGA ATGGCTTATTCTCGTCGGCATGACTTTTTGTTTTGCAATTTATGTGGAACAATGCTATCATTCAGCTCAACGAGATATGTTGAGTGTCCTTTGTGCAAGTCCAAGCGAAGTGCAAAAGAGGTCGTCGGTAAGGAAATAAGTTACACAGTTACTGCTGAGGAAATTAGAAAGCAGTTGGGAATTTCATTAATTGATGAAGAGAAAGTGCAACTATCAAAGGAAAGGAGGAGATGTGAAAAATGTGGGAATGATGAAGCTTGGTTTGAGAGCAGACAGGTACTTTACAAACATAAAGAACACACTCTTGAGATTTCTTTCTTTCTCCCATTAGAAAAGAGTCCTAAGTTTGAGGGCAATTTCAATAAAAATGCAGATGAGATCAGCTGA ATGGCTTATTCTCGTCGGCATGACTTTTTGTTTTGCAATTTATGTGGAACAATGCTATCATTCAGCTCAACGAGATATGTTGAGTGTCCTTTGTGCAAGTCCAAGCGAAGTGCAAAAGAGGTCGTCGGTAAGGAAATAAGTTACACAGTTACTGCTGAGGAAATTAGAAAGCAGTTGGGAATTTCATTAATTGATGAAGAGAAAGTGCAACTATCAAAGGAAAGGAGGAGATGTGAAAAATGTGGGAATGATGAAGCTTGGTTTGAGAGCAGACAGGTACTTTACAAACATAAAGAACACACTCTTGAGATTTCTTTCTTTCTCCCATTAGAAAAGAGTCCTAAGTTTGAGGGCAATTTCAATAAAAATGCAGATGAGATCAGCTGA MAYSRRHDFLFCNLCGTMLSFSSTRYVECPLCKSKRSAKEVVGKEISYTVTAEEIRKQLGISLIDEEKVQLSKERRRCEKCGNDEAWFESRQVLYKHKEHTLEISFFLPLEKSPKFEGNFNKNADEIS Homology
BLAST of Lcy01g016160 vs. ExPASy TrEMBL
Match: A0A6J1CTE6 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111014043 PE=3 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 3.1e-42 Identity = 86/93 (92.47%), Postives = 92/93 (98.92%), Query Frame = 0
BLAST of Lcy01g016160 vs. ExPASy TrEMBL
Match: A0A6J1HDS4 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111463020 PE=3 SV=1) HSP 1 Score: 177.6 bits (449), Expect = 3.4e-41 Identity = 85/93 (91.40%), Postives = 91/93 (97.85%), Query Frame = 0
BLAST of Lcy01g016160 vs. ExPASy TrEMBL
Match: A0A6J1KC19 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111492509 PE=3 SV=1) HSP 1 Score: 177.2 bits (448), Expect = 4.4e-41 Identity = 84/93 (90.32%), Postives = 91/93 (97.85%), Query Frame = 0
BLAST of Lcy01g016160 vs. ExPASy TrEMBL
Match: A0A0A0LKC4 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_2G345940 PE=3 SV=1) HSP 1 Score: 174.9 bits (442), Expect = 2.2e-40 Identity = 83/93 (89.25%), Postives = 90/93 (96.77%), Query Frame = 0
BLAST of Lcy01g016160 vs. ExPASy TrEMBL
Match: A0A1S3BBZ4 (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103488399 PE=3 SV=1) HSP 1 Score: 172.9 bits (437), Expect = 8.4e-40 Identity = 83/93 (89.25%), Postives = 89/93 (95.70%), Query Frame = 0
BLAST of Lcy01g016160 vs. NCBI nr
Match: XP_022144336.1 (DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia] >XP_022144337.1 DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia]) HSP 1 Score: 181.0 bits (458), Expect = 6.4e-42 Identity = 86/93 (92.47%), Postives = 92/93 (98.92%), Query Frame = 0
BLAST of Lcy01g016160 vs. NCBI nr
Match: KAG6598510.1 (DNA-directed RNA polymerase I subunit RPA12, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 180.3 bits (456), Expect = 1.1e-41 Identity = 86/93 (92.47%), Postives = 92/93 (98.92%), Query Frame = 0
BLAST of Lcy01g016160 vs. NCBI nr
Match: XP_023546814.1 (DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita pepo subsp. pepo] >KAG7029447.1 DNA-directed RNA polymerase I subunit RPA12 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 180.3 bits (456), Expect = 1.1e-41 Identity = 86/93 (92.47%), Postives = 92/93 (98.92%), Query Frame = 0
BLAST of Lcy01g016160 vs. NCBI nr
Match: XP_038886279.1 (DNA-directed RNA polymerase I subunit RPA12-like isoform X1 [Benincasa hispida] >XP_038886280.1 DNA-directed RNA polymerase I subunit RPA12-like isoform X1 [Benincasa hispida] >XP_038886281.1 DNA-directed RNA polymerase I subunit RPA12-like isoform X1 [Benincasa hispida] >XP_038886282.1 DNA-directed RNA polymerase I subunit RPA12-like isoform X1 [Benincasa hispida]) HSP 1 Score: 178.3 bits (451), Expect = 4.1e-41 Identity = 84/93 (90.32%), Postives = 92/93 (98.92%), Query Frame = 0
BLAST of Lcy01g016160 vs. NCBI nr
Match: XP_022962626.1 (DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita moschata] >XP_022962627.1 DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita moschata]) HSP 1 Score: 177.6 bits (449), Expect = 7.0e-41 Identity = 85/93 (91.40%), Postives = 91/93 (97.85%), Query Frame = 0
BLAST of Lcy01g016160 vs. TAIR 10
Match: AT3G25940.1 (TFIIB zinc-binding protein ) HSP 1 Score: 103.2 bits (256), Expect = 1.6e-22 Identity = 50/95 (52.63%), Postives = 70/95 (73.68%), Query Frame = 0
BLAST of Lcy01g016160 vs. TAIR 10
Match: AT1G20065.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: TFIIB zinc-binding protein (TAIR:AT3G25940.1). ) HSP 1 Score: 84.7 bits (208), Expect = 5.8e-17 Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 0
BLAST of Lcy01g016160 vs. TAIR 10
Match: AT1G20065.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: TFIIB zinc-binding protein (TAIR:AT3G25940.1). ) HSP 1 Score: 72.8 bits (177), Expect = 2.3e-13 Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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