Lcy01g016000 (gene) Sponge gourd (P93075) v1

Overview
NameLcy01g016000
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionComplex 1 LYR protein
LocationChr01: 37548261 .. 37548734 (+)
RNA-Seq ExpressionLcy01g016000
SyntenyLcy01g016000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCATGAGGCTGCTGGGAAAATGTTTTAACCTGTCAGTTCATAAGAATTCTCTGGCTTGCAATAAAATTGTTTTCTACCCTCGAGTTTTGCATAATGGTCCAGACACAATAGATGAACTTTTAGACAGACACGTGGTTAAGAAAAAAAAGTCCTATGATGATGAAGATGATGAATTGATAACTCAGCGACGCCTCACCAGCACTCGACGTGAGGCTCTAAGTCTCTACCGAGACATTCTCCGTGCAACTCGATTCTTTATGTGGCCAGATTCTCGAGGTGTCTTGTGGCGGGATGTTCTCAGGGAGAATGCCCGGAAGGAGTTTGAGAATGCTCGCTATGAGTCTGATCCAGAAATTGTGACCCGACTTCTCATTGGTGGGCGCGATGCAGTGCAGTCGGCTCTCGACAAGCTTGCTGAGAAGCAAATGCAGGAGATTAATAAGAAACAAAGTGGTCGAGATCAACTCTGA

mRNA sequence

ATGACCATGAGGCTGCTGGGAAAATGTTTTAACCTGTCAGTTCATAAGAATTCTCTGGCTTGCAATAAAATTGTTTTCTACCCTCGAGTTTTGCATAATGGTCCAGACACAATAGATGAACTTTTAGACAGACACGTGGTTAAGAAAAAAAAGTCCTATGATGATGAAGATGATGAATTGATAACTCAGCGACGCCTCACCAGCACTCGACGTGAGGCTCTAAGTCTCTACCGAGACATTCTCCGTGCAACTCGATTCTTTATGTGGCCAGATTCTCGAGGTGTCTTGTGGCGGGATGTTCTCAGGGAGAATGCCCGGAAGGAGTTTGAGAATGCTCGCTATGAGTCTGATCCAGAAATTGTGACCCGACTTCTCATTGGTGGGCGCGATGCAGTGCAGTCGGCTCTCGACAAGCTTGCTGAGAAGCAAATGCAGGAGATTAATAAGAAACAAAGTGGTCGAGATCAACTCTGA

Coding sequence (CDS)

ATGACCATGAGGCTGCTGGGAAAATGTTTTAACCTGTCAGTTCATAAGAATTCTCTGGCTTGCAATAAAATTGTTTTCTACCCTCGAGTTTTGCATAATGGTCCAGACACAATAGATGAACTTTTAGACAGACACGTGGTTAAGAAAAAAAAGTCCTATGATGATGAAGATGATGAATTGATAACTCAGCGACGCCTCACCAGCACTCGACGTGAGGCTCTAAGTCTCTACCGAGACATTCTCCGTGCAACTCGATTCTTTATGTGGCCAGATTCTCGAGGTGTCTTGTGGCGGGATGTTCTCAGGGAGAATGCCCGGAAGGAGTTTGAGAATGCTCGCTATGAGTCTGATCCAGAAATTGTGACCCGACTTCTCATTGGTGGGCGCGATGCAGTGCAGTCGGCTCTCGACAAGCTTGCTGAGAAGCAAATGCAGGAGATTAATAAGAAACAAAGTGGTCGAGATCAACTCTGA

Protein sequence

MTMRLLGKCFNLSVHKNSLACNKIVFYPRVLHNGPDTIDELLDRHVVKKKKSYDDEDDELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFENARYESDPEIVTRLLIGGRDAVQSALDKLAEKQMQEINKKQSGRDQL
Homology
BLAST of Lcy01g016000 vs. ExPASy TrEMBL
Match: A0A6J1CRY1 (uncharacterized protein LOC111014019 OS=Momordica charantia OX=3673 GN=LOC111014019 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 6.0e-72
Identity = 138/156 (88.46%), Postives = 149/156 (95.51%), Query Frame = 0

Query: 1   MTMRLLGKCFNLSVHKNSLACNKIVFYPRVLHNGPDTIDELLDRHVVKKKKSYDDEDDEL 60
           MT+RL+GKC NLS+HK+ LACNKI F+PRVLHNGPDTIDELLDRHVVKK+KS++DEDDEL
Sbjct: 9   MTIRLVGKCLNLSIHKHFLACNKIGFHPRVLHNGPDTIDELLDRHVVKKEKSFNDEDDEL 68

Query: 61  ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFENARYESDPEI 120
           ITQR LTSTRREALSLYRDI+RATRFFMWPDSRGVLWRDVLRENARKEFE ARYESDPE+
Sbjct: 69  ITQRHLTSTRREALSLYRDIIRATRFFMWPDSRGVLWRDVLRENARKEFEEARYESDPEV 128

Query: 121 VTRLLIGGRDAVQSALDKLAEKQMQEINKKQSGRDQ 157
           VTRLLIGGRDAVQSALDKLAEKQMQEI+KKQ G DQ
Sbjct: 129 VTRLLIGGRDAVQSALDKLAEKQMQEIDKKQHGGDQ 164

BLAST of Lcy01g016000 vs. ExPASy TrEMBL
Match: A0A6J1HEL0 (uncharacterized protein LOC111462339 OS=Cucurbita moschata OX=3662 GN=LOC111462339 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.1e-69
Identity = 133/156 (85.26%), Postives = 149/156 (95.51%), Query Frame = 0

Query: 1   MTMRLLGKCFNLSVHKNSLACNKIVFYPRVLHNGPDTIDELLDRHVVKKKKSYDDEDDEL 60
           M+MRL+ KC  LS HKN LACNK+ F+PR+LHNGPDTIDELLDRHVVKK+KS+DD+++EL
Sbjct: 1   MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60

Query: 61  ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFENARYESDPEI 120
           ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLR+NARKEFE+AR+E+DPEI
Sbjct: 61  ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120

Query: 121 VTRLLIGGRDAVQSALDKLAEKQMQEINKKQSGRDQ 157
           VTRLLIGGRDAVQSALDKLAEKQ QEI+KKQSGRD+
Sbjct: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDR 156

BLAST of Lcy01g016000 vs. ExPASy TrEMBL
Match: A0A0A0LMK5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G346590 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 6.8e-68
Identity = 134/158 (84.81%), Postives = 148/158 (93.67%), Query Frame = 0

Query: 1   MTMRLLGKCFNL-SVHKNSLACNKIVFYPRVLHNGPDTIDELLDRHVVKKKKSYDDEDDE 60
           MTMRL+GK  NL S+HKN L C+KI F+PRVLHNGPDT++ELLDRHVVKK+K +DDEDD+
Sbjct: 1   MTMRLVGKYLNLSSIHKNFLTCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKFFDDEDDK 60

Query: 61  LITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFENARYESDPE 120
           LITQRRLT+TRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFE+AR ESDPE
Sbjct: 61  LITQRRLTTTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFEDARLESDPE 120

Query: 121 IVTRLLIGGRDAVQSALDKLAEKQMQEINKKQSGRDQL 158
           +VTRLLIGGRDAVQSALDKLAEKQ +EI+KKQ GRDQL
Sbjct: 121 MVTRLLIGGRDAVQSALDKLAEKQREEIDKKQGGRDQL 158

BLAST of Lcy01g016000 vs. ExPASy TrEMBL
Match: A0A6J1K786 (uncharacterized protein LOC111492289 OS=Cucurbita maxima OX=3661 GN=LOC111492289 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.7e-66
Identity = 129/156 (82.69%), Postives = 145/156 (92.95%), Query Frame = 0

Query: 1   MTMRLLGKCFNLSVHKNSLACNKIVFYPRVLHNGPDTIDELLDRHVVKKKKSYDDEDDEL 60
           M+MRL+ KC  LS HKN LACNK  ++PR LHNGPDTIDELLD HVVKK+KS+DD+++EL
Sbjct: 1   MSMRLVEKCVKLSTHKNFLACNKFGYHPRALHNGPDTIDELLDIHVVKKEKSFDDDEEEL 60

Query: 61  ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFENARYESDPEI 120
           ITQRRLTSTRRE+LSLYRDILRATRFFMWPDSRGVLWRDVLR+NARKEFE+AR+E+DPEI
Sbjct: 61  ITQRRLTSTRRESLSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120

Query: 121 VTRLLIGGRDAVQSALDKLAEKQMQEINKKQSGRDQ 157
           VTRLLIGGRDAVQSALDKLAEKQ QEI+KKQSG D+
Sbjct: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGDR 156

BLAST of Lcy01g016000 vs. ExPASy TrEMBL
Match: A0A5A7VCD6 (Complex 1 LYR protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001620 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.2e-66
Identity = 133/158 (84.18%), Postives = 148/158 (93.67%), Query Frame = 0

Query: 1   MTMRLLGKCFNL-SVHKNSLACNKIVFYPRVLHNGPDTIDELLDRHVVKKKKSYDDEDDE 60
           MTMRL+GK  NL S+ KN L C+KI F+PRVLHNGPDT++ELLDRHVVKK+KS DD+ D+
Sbjct: 1   MTMRLVGKYLNLSSIDKNFLNCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKSLDDDADK 60

Query: 61  LITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFENARYESDPE 120
           LITQRRLTSTRREALSLYRDILRATRFFMWPDS+GVLWRDVLR+NARKEFE+AR+ESDPE
Sbjct: 61  LITQRRLTSTRREALSLYRDILRATRFFMWPDSKGVLWRDVLRQNARKEFEDARFESDPE 120

Query: 121 IVTRLLIGGRDAVQSALDKLAEKQMQEINKKQSGRDQL 158
           IVTRLLIGGRDAVQSALDKLAEKQ +EI+KKQSGRDQL
Sbjct: 121 IVTRLLIGGRDAVQSALDKLAEKQRKEIDKKQSGRDQL 158

BLAST of Lcy01g016000 vs. NCBI nr
Match: XP_038884246.1 (uncharacterized protein LOC120075144 [Benincasa hispida])

HSP 1 Score: 281.2 bits (718), Expect = 5.5e-72
Identity = 138/155 (89.03%), Postives = 150/155 (96.77%), Query Frame = 0

Query: 3   MRLLGKCFNLSVHKNSLACNKIVFYPRVLHNGPDTIDELLDRHVVKKKKSYDDEDDELIT 62
           MRL+GKC NLS+HKN L CNKI F+PRVLHNGPDT+ ELLDRHVVKK+KS+DDE+DELIT
Sbjct: 1   MRLVGKCLNLSIHKNFLTCNKIGFHPRVLHNGPDTVAELLDRHVVKKEKSFDDEEDELIT 60

Query: 63  QRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFENARYESDPEIVT 122
           QRRLT+TRREALSLYRDILRATRFFMWPDSRGVLWRDVLR+NARKEFE+ARYESDPEIVT
Sbjct: 61  QRRLTTTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARYESDPEIVT 120

Query: 123 RLLIGGRDAVQSALDKLAEKQMQEINKKQSGRDQL 158
           RLLIGGRDAVQSALDKLAEKQMQEI+KKQ+GRDQL
Sbjct: 121 RLLIGGRDAVQSALDKLAEKQMQEIDKKQNGRDQL 155

BLAST of Lcy01g016000 vs. NCBI nr
Match: XP_022144304.1 (uncharacterized protein LOC111014019 [Momordica charantia])

HSP 1 Score: 280.0 bits (715), Expect = 1.2e-71
Identity = 138/156 (88.46%), Postives = 149/156 (95.51%), Query Frame = 0

Query: 1   MTMRLLGKCFNLSVHKNSLACNKIVFYPRVLHNGPDTIDELLDRHVVKKKKSYDDEDDEL 60
           MT+RL+GKC NLS+HK+ LACNKI F+PRVLHNGPDTIDELLDRHVVKK+KS++DEDDEL
Sbjct: 9   MTIRLVGKCLNLSIHKHFLACNKIGFHPRVLHNGPDTIDELLDRHVVKKEKSFNDEDDEL 68

Query: 61  ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFENARYESDPEI 120
           ITQR LTSTRREALSLYRDI+RATRFFMWPDSRGVLWRDVLRENARKEFE ARYESDPE+
Sbjct: 69  ITQRHLTSTRREALSLYRDIIRATRFFMWPDSRGVLWRDVLRENARKEFEEARYESDPEV 128

Query: 121 VTRLLIGGRDAVQSALDKLAEKQMQEINKKQSGRDQ 157
           VTRLLIGGRDAVQSALDKLAEKQMQEI+KKQ G DQ
Sbjct: 129 VTRLLIGGRDAVQSALDKLAEKQMQEIDKKQHGGDQ 164

BLAST of Lcy01g016000 vs. NCBI nr
Match: XP_022961619.1 (uncharacterized protein LOC111462339 [Cucurbita moschata] >XP_022961620.1 uncharacterized protein LOC111462339 [Cucurbita moschata] >KAG6598519.1 hypothetical protein SDJN03_08297, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 271.6 bits (693), Expect = 4.4e-69
Identity = 133/156 (85.26%), Postives = 149/156 (95.51%), Query Frame = 0

Query: 1   MTMRLLGKCFNLSVHKNSLACNKIVFYPRVLHNGPDTIDELLDRHVVKKKKSYDDEDDEL 60
           M+MRL+ KC  LS HKN LACNK+ F+PR+LHNGPDTIDELLDRHVVKK+KS+DD+++EL
Sbjct: 1   MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60

Query: 61  ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFENARYESDPEI 120
           ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLR+NARKEFE+AR+E+DPEI
Sbjct: 61  ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120

Query: 121 VTRLLIGGRDAVQSALDKLAEKQMQEINKKQSGRDQ 157
           VTRLLIGGRDAVQSALDKLAEKQ QEI+KKQSGRD+
Sbjct: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDR 156

BLAST of Lcy01g016000 vs. NCBI nr
Match: XP_023545212.1 (uncharacterized protein LOC111804691 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.9 bits (686), Expect = 2.8e-68
Identity = 133/156 (85.26%), Postives = 147/156 (94.23%), Query Frame = 0

Query: 1   MTMRLLGKCFNLSVHKNSLACNKIVFYPRVLHNGPDTIDELLDRHVVKKKKSYDDEDDEL 60
           M+MRL+ KC  LS HKN LACNKI + PR LHNGPDTIDELLDRHVVKK+KS+DD+++EL
Sbjct: 1   MSMRLVEKCVKLSTHKNFLACNKIGYRPRALHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60

Query: 61  ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFENARYESDPEI 120
           ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLR+NARKEFE+AR+E+DPEI
Sbjct: 61  ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120

Query: 121 VTRLLIGGRDAVQSALDKLAEKQMQEINKKQSGRDQ 157
           VTRLLIGGRDAVQSALDKLAEKQ QEI+KKQSGRD+
Sbjct: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDR 156

BLAST of Lcy01g016000 vs. NCBI nr
Match: XP_031736624.1 (uncharacterized protein LOC101214249 [Cucumis sativus] >KGN62269.1 hypothetical protein Csa_018772 [Cucumis sativus])

HSP 1 Score: 266.5 bits (680), Expect = 1.4e-67
Identity = 134/158 (84.81%), Postives = 148/158 (93.67%), Query Frame = 0

Query: 1   MTMRLLGKCFNL-SVHKNSLACNKIVFYPRVLHNGPDTIDELLDRHVVKKKKSYDDEDDE 60
           MTMRL+GK  NL S+HKN L C+KI F+PRVLHNGPDT++ELLDRHVVKK+K +DDEDD+
Sbjct: 1   MTMRLVGKYLNLSSIHKNFLTCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKFFDDEDDK 60

Query: 61  LITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFENARYESDPE 120
           LITQRRLT+TRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFE+AR ESDPE
Sbjct: 61  LITQRRLTTTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFEDARLESDPE 120

Query: 121 IVTRLLIGGRDAVQSALDKLAEKQMQEINKKQSGRDQL 158
           +VTRLLIGGRDAVQSALDKLAEKQ +EI+KKQ GRDQL
Sbjct: 121 MVTRLLIGGRDAVQSALDKLAEKQREEIDKKQGGRDQL 158

BLAST of Lcy01g016000 vs. TAIR 10
Match: AT1G76060.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 179.9 bits (455), Expect = 1.6e-45
Identity = 91/126 (72.22%), Postives = 106/126 (84.13%), Query Frame = 0

Query: 29  RVLHNGPDTIDELLDRHVVKKKKSYDDEDD-ELITQRRLTSTRREALSLYRDILRATRFF 88
           R LH GPDT++ELL+RH+ KK+K   D D+ E + +RRLTSTRREALSLYRDILRATRFF
Sbjct: 29  RFLHEGPDTVEELLERHLAKKEKPIIDHDEAEFLNRRRLTSTRREALSLYRDILRATRFF 88

Query: 89  MWPDSRGVLWRDVLRENARKEFENARYESDPEIVTRLLIGGRDAVQSALDKLAEKQMQEI 148
            W DSRG LWRDVLRENARKEFE AR+E+DPE++TRLLIGG DAV SALDKLAEKQ + I
Sbjct: 89  TWIDSRGNLWRDVLRENARKEFEAARFETDPEVITRLLIGGSDAVSSALDKLAEKQREMI 148

Query: 149 NKKQSG 154
            K++ G
Sbjct: 149 EKQRRG 154

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CRY16.0e-7288.46uncharacterized protein LOC111014019 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A6J1HEL02.1e-6985.26uncharacterized protein LOC111462339 OS=Cucurbita moschata OX=3662 GN=LOC1114623... [more]
A0A0A0LMK56.8e-6884.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G346590 PE=4 SV=1[more]
A0A6J1K7861.7e-6682.69uncharacterized protein LOC111492289 OS=Cucurbita maxima OX=3661 GN=LOC111492289... [more]
A0A5A7VCD62.2e-6684.18Complex 1 LYR protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82... [more]
Match NameE-valueIdentityDescription
XP_038884246.15.5e-7289.03uncharacterized protein LOC120075144 [Benincasa hispida][more]
XP_022144304.11.2e-7188.46uncharacterized protein LOC111014019 [Momordica charantia][more]
XP_022961619.14.4e-6985.26uncharacterized protein LOC111462339 [Cucurbita moschata] >XP_022961620.1 unchar... [more]
XP_023545212.12.8e-6885.26uncharacterized protein LOC111804691 [Cucurbita pepo subsp. pepo][more]
XP_031736624.11.4e-6784.81uncharacterized protein LOC101214249 [Cucumis sativus] >KGN62269.1 hypothetical ... [more]
Match NameE-valueIdentityDescription
AT1G76060.11.6e-4572.22LYR family of Fe/S cluster biogenesis protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 71..131
e-value: 1.3E-11
score: 44.4
NoneNo IPR availablePANTHERPTHR47484:SF1COMPLEX 1 PROTEIN CONTAINING PROTEIN, EXPRESSEDcoord: 6..156
NoneNo IPR availablePANTHERPTHR47484COMPLEX 1 PROTEIN CONTAINING PROTEIN, EXPRESSEDcoord: 6..156
NoneNo IPR availableCDDcd20267Complex1_LYR_LYRM7coord: 73..146
e-value: 4.95818E-17
score: 69.1295

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy01g016000.1Lcy01g016000.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032981 mitochondrial respiratory chain complex I assembly
cellular_component GO:0005759 mitochondrial matrix