Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCATGAGGCTGCTGGGAAAATGTTTTAACCTGTCAGTTCATAAGAATTCTCTGGCTTGCAATAAAATTGTTTTCTACCCTCGAGTTTTGCATAATGGTCCAGACACAATAGATGAACTTTTAGACAGACACGTGGTTAAGAAAAAAAAGTCCTATGATGATGAAGATGATGAATTGATAACTCAGCGACGCCTCACCAGCACTCGACGTGAGGCTCTAAGTCTCTACCGAGACATTCTCCGTGCAACTCGATTCTTTATGTGGCCAGATTCTCGAGGTGTCTTGTGGCGGGATGTTCTCAGGGAGAATGCCCGGAAGGAGTTTGAGAATGCTCGCTATGAGTCTGATCCAGAAATTGTGACCCGACTTCTCATTGGTGGGCGCGATGCAGTGCAGTCGGCTCTCGACAAGCTTGCTGAGAAGCAAATGCAGGAGATTAATAAGAAACAAAGTGGTCGAGATCAACTCTGA
mRNA sequence
ATGACCATGAGGCTGCTGGGAAAATGTTTTAACCTGTCAGTTCATAAGAATTCTCTGGCTTGCAATAAAATTGTTTTCTACCCTCGAGTTTTGCATAATGGTCCAGACACAATAGATGAACTTTTAGACAGACACGTGGTTAAGAAAAAAAAGTCCTATGATGATGAAGATGATGAATTGATAACTCAGCGACGCCTCACCAGCACTCGACGTGAGGCTCTAAGTCTCTACCGAGACATTCTCCGTGCAACTCGATTCTTTATGTGGCCAGATTCTCGAGGTGTCTTGTGGCGGGATGTTCTCAGGGAGAATGCCCGGAAGGAGTTTGAGAATGCTCGCTATGAGTCTGATCCAGAAATTGTGACCCGACTTCTCATTGGTGGGCGCGATGCAGTGCAGTCGGCTCTCGACAAGCTTGCTGAGAAGCAAATGCAGGAGATTAATAAGAAACAAAGTGGTCGAGATCAACTCTGA
Coding sequence (CDS)
ATGACCATGAGGCTGCTGGGAAAATGTTTTAACCTGTCAGTTCATAAGAATTCTCTGGCTTGCAATAAAATTGTTTTCTACCCTCGAGTTTTGCATAATGGTCCAGACACAATAGATGAACTTTTAGACAGACACGTGGTTAAGAAAAAAAAGTCCTATGATGATGAAGATGATGAATTGATAACTCAGCGACGCCTCACCAGCACTCGACGTGAGGCTCTAAGTCTCTACCGAGACATTCTCCGTGCAACTCGATTCTTTATGTGGCCAGATTCTCGAGGTGTCTTGTGGCGGGATGTTCTCAGGGAGAATGCCCGGAAGGAGTTTGAGAATGCTCGCTATGAGTCTGATCCAGAAATTGTGACCCGACTTCTCATTGGTGGGCGCGATGCAGTGCAGTCGGCTCTCGACAAGCTTGCTGAGAAGCAAATGCAGGAGATTAATAAGAAACAAAGTGGTCGAGATCAACTCTGA
Protein sequence
MTMRLLGKCFNLSVHKNSLACNKIVFYPRVLHNGPDTIDELLDRHVVKKKKSYDDEDDELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFENARYESDPEIVTRLLIGGRDAVQSALDKLAEKQMQEINKKQSGRDQL
Homology
BLAST of Lcy01g016000 vs. ExPASy TrEMBL
Match:
A0A6J1CRY1 (uncharacterized protein LOC111014019 OS=Momordica charantia OX=3673 GN=LOC111014019 PE=4 SV=1)
HSP 1 Score: 280.0 bits (715), Expect = 6.0e-72
Identity = 138/156 (88.46%), Postives = 149/156 (95.51%), Query Frame = 0
Query: 1 MTMRLLGKCFNLSVHKNSLACNKIVFYPRVLHNGPDTIDELLDRHVVKKKKSYDDEDDEL 60
MT+RL+GKC NLS+HK+ LACNKI F+PRVLHNGPDTIDELLDRHVVKK+KS++DEDDEL
Sbjct: 9 MTIRLVGKCLNLSIHKHFLACNKIGFHPRVLHNGPDTIDELLDRHVVKKEKSFNDEDDEL 68
Query: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFENARYESDPEI 120
ITQR LTSTRREALSLYRDI+RATRFFMWPDSRGVLWRDVLRENARKEFE ARYESDPE+
Sbjct: 69 ITQRHLTSTRREALSLYRDIIRATRFFMWPDSRGVLWRDVLRENARKEFEEARYESDPEV 128
Query: 121 VTRLLIGGRDAVQSALDKLAEKQMQEINKKQSGRDQ 157
VTRLLIGGRDAVQSALDKLAEKQMQEI+KKQ G DQ
Sbjct: 129 VTRLLIGGRDAVQSALDKLAEKQMQEIDKKQHGGDQ 164
BLAST of Lcy01g016000 vs. ExPASy TrEMBL
Match:
A0A6J1HEL0 (uncharacterized protein LOC111462339 OS=Cucurbita moschata OX=3662 GN=LOC111462339 PE=4 SV=1)
HSP 1 Score: 271.6 bits (693), Expect = 2.1e-69
Identity = 133/156 (85.26%), Postives = 149/156 (95.51%), Query Frame = 0
Query: 1 MTMRLLGKCFNLSVHKNSLACNKIVFYPRVLHNGPDTIDELLDRHVVKKKKSYDDEDDEL 60
M+MRL+ KC LS HKN LACNK+ F+PR+LHNGPDTIDELLDRHVVKK+KS+DD+++EL
Sbjct: 1 MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
Query: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFENARYESDPEI 120
ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLR+NARKEFE+AR+E+DPEI
Sbjct: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
Query: 121 VTRLLIGGRDAVQSALDKLAEKQMQEINKKQSGRDQ 157
VTRLLIGGRDAVQSALDKLAEKQ QEI+KKQSGRD+
Sbjct: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDR 156
BLAST of Lcy01g016000 vs. ExPASy TrEMBL
Match:
A0A0A0LMK5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G346590 PE=4 SV=1)
HSP 1 Score: 266.5 bits (680), Expect = 6.8e-68
Identity = 134/158 (84.81%), Postives = 148/158 (93.67%), Query Frame = 0
Query: 1 MTMRLLGKCFNL-SVHKNSLACNKIVFYPRVLHNGPDTIDELLDRHVVKKKKSYDDEDDE 60
MTMRL+GK NL S+HKN L C+KI F+PRVLHNGPDT++ELLDRHVVKK+K +DDEDD+
Sbjct: 1 MTMRLVGKYLNLSSIHKNFLTCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKFFDDEDDK 60
Query: 61 LITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFENARYESDPE 120
LITQRRLT+TRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFE+AR ESDPE
Sbjct: 61 LITQRRLTTTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFEDARLESDPE 120
Query: 121 IVTRLLIGGRDAVQSALDKLAEKQMQEINKKQSGRDQL 158
+VTRLLIGGRDAVQSALDKLAEKQ +EI+KKQ GRDQL
Sbjct: 121 MVTRLLIGGRDAVQSALDKLAEKQREEIDKKQGGRDQL 158
BLAST of Lcy01g016000 vs. ExPASy TrEMBL
Match:
A0A6J1K786 (uncharacterized protein LOC111492289 OS=Cucurbita maxima OX=3661 GN=LOC111492289 PE=4 SV=1)
HSP 1 Score: 261.9 bits (668), Expect = 1.7e-66
Identity = 129/156 (82.69%), Postives = 145/156 (92.95%), Query Frame = 0
Query: 1 MTMRLLGKCFNLSVHKNSLACNKIVFYPRVLHNGPDTIDELLDRHVVKKKKSYDDEDDEL 60
M+MRL+ KC LS HKN LACNK ++PR LHNGPDTIDELLD HVVKK+KS+DD+++EL
Sbjct: 1 MSMRLVEKCVKLSTHKNFLACNKFGYHPRALHNGPDTIDELLDIHVVKKEKSFDDDEEEL 60
Query: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFENARYESDPEI 120
ITQRRLTSTRRE+LSLYRDILRATRFFMWPDSRGVLWRDVLR+NARKEFE+AR+E+DPEI
Sbjct: 61 ITQRRLTSTRRESLSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
Query: 121 VTRLLIGGRDAVQSALDKLAEKQMQEINKKQSGRDQ 157
VTRLLIGGRDAVQSALDKLAEKQ QEI+KKQSG D+
Sbjct: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGDR 156
BLAST of Lcy01g016000 vs. ExPASy TrEMBL
Match:
A0A5A7VCD6 (Complex 1 LYR protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001620 PE=4 SV=1)
HSP 1 Score: 261.5 bits (667), Expect = 2.2e-66
Identity = 133/158 (84.18%), Postives = 148/158 (93.67%), Query Frame = 0
Query: 1 MTMRLLGKCFNL-SVHKNSLACNKIVFYPRVLHNGPDTIDELLDRHVVKKKKSYDDEDDE 60
MTMRL+GK NL S+ KN L C+KI F+PRVLHNGPDT++ELLDRHVVKK+KS DD+ D+
Sbjct: 1 MTMRLVGKYLNLSSIDKNFLNCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKSLDDDADK 60
Query: 61 LITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFENARYESDPE 120
LITQRRLTSTRREALSLYRDILRATRFFMWPDS+GVLWRDVLR+NARKEFE+AR+ESDPE
Sbjct: 61 LITQRRLTSTRREALSLYRDILRATRFFMWPDSKGVLWRDVLRQNARKEFEDARFESDPE 120
Query: 121 IVTRLLIGGRDAVQSALDKLAEKQMQEINKKQSGRDQL 158
IVTRLLIGGRDAVQSALDKLAEKQ +EI+KKQSGRDQL
Sbjct: 121 IVTRLLIGGRDAVQSALDKLAEKQRKEIDKKQSGRDQL 158
BLAST of Lcy01g016000 vs. NCBI nr
Match:
XP_038884246.1 (uncharacterized protein LOC120075144 [Benincasa hispida])
HSP 1 Score: 281.2 bits (718), Expect = 5.5e-72
Identity = 138/155 (89.03%), Postives = 150/155 (96.77%), Query Frame = 0
Query: 3 MRLLGKCFNLSVHKNSLACNKIVFYPRVLHNGPDTIDELLDRHVVKKKKSYDDEDDELIT 62
MRL+GKC NLS+HKN L CNKI F+PRVLHNGPDT+ ELLDRHVVKK+KS+DDE+DELIT
Sbjct: 1 MRLVGKCLNLSIHKNFLTCNKIGFHPRVLHNGPDTVAELLDRHVVKKEKSFDDEEDELIT 60
Query: 63 QRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFENARYESDPEIVT 122
QRRLT+TRREALSLYRDILRATRFFMWPDSRGVLWRDVLR+NARKEFE+ARYESDPEIVT
Sbjct: 61 QRRLTTTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARYESDPEIVT 120
Query: 123 RLLIGGRDAVQSALDKLAEKQMQEINKKQSGRDQL 158
RLLIGGRDAVQSALDKLAEKQMQEI+KKQ+GRDQL
Sbjct: 121 RLLIGGRDAVQSALDKLAEKQMQEIDKKQNGRDQL 155
BLAST of Lcy01g016000 vs. NCBI nr
Match:
XP_022144304.1 (uncharacterized protein LOC111014019 [Momordica charantia])
HSP 1 Score: 280.0 bits (715), Expect = 1.2e-71
Identity = 138/156 (88.46%), Postives = 149/156 (95.51%), Query Frame = 0
Query: 1 MTMRLLGKCFNLSVHKNSLACNKIVFYPRVLHNGPDTIDELLDRHVVKKKKSYDDEDDEL 60
MT+RL+GKC NLS+HK+ LACNKI F+PRVLHNGPDTIDELLDRHVVKK+KS++DEDDEL
Sbjct: 9 MTIRLVGKCLNLSIHKHFLACNKIGFHPRVLHNGPDTIDELLDRHVVKKEKSFNDEDDEL 68
Query: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFENARYESDPEI 120
ITQR LTSTRREALSLYRDI+RATRFFMWPDSRGVLWRDVLRENARKEFE ARYESDPE+
Sbjct: 69 ITQRHLTSTRREALSLYRDIIRATRFFMWPDSRGVLWRDVLRENARKEFEEARYESDPEV 128
Query: 121 VTRLLIGGRDAVQSALDKLAEKQMQEINKKQSGRDQ 157
VTRLLIGGRDAVQSALDKLAEKQMQEI+KKQ G DQ
Sbjct: 129 VTRLLIGGRDAVQSALDKLAEKQMQEIDKKQHGGDQ 164
BLAST of Lcy01g016000 vs. NCBI nr
Match:
XP_022961619.1 (uncharacterized protein LOC111462339 [Cucurbita moschata] >XP_022961620.1 uncharacterized protein LOC111462339 [Cucurbita moschata] >KAG6598519.1 hypothetical protein SDJN03_08297, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 271.6 bits (693), Expect = 4.4e-69
Identity = 133/156 (85.26%), Postives = 149/156 (95.51%), Query Frame = 0
Query: 1 MTMRLLGKCFNLSVHKNSLACNKIVFYPRVLHNGPDTIDELLDRHVVKKKKSYDDEDDEL 60
M+MRL+ KC LS HKN LACNK+ F+PR+LHNGPDTIDELLDRHVVKK+KS+DD+++EL
Sbjct: 1 MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
Query: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFENARYESDPEI 120
ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLR+NARKEFE+AR+E+DPEI
Sbjct: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
Query: 121 VTRLLIGGRDAVQSALDKLAEKQMQEINKKQSGRDQ 157
VTRLLIGGRDAVQSALDKLAEKQ QEI+KKQSGRD+
Sbjct: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDR 156
BLAST of Lcy01g016000 vs. NCBI nr
Match:
XP_023545212.1 (uncharacterized protein LOC111804691 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 268.9 bits (686), Expect = 2.8e-68
Identity = 133/156 (85.26%), Postives = 147/156 (94.23%), Query Frame = 0
Query: 1 MTMRLLGKCFNLSVHKNSLACNKIVFYPRVLHNGPDTIDELLDRHVVKKKKSYDDEDDEL 60
M+MRL+ KC LS HKN LACNKI + PR LHNGPDTIDELLDRHVVKK+KS+DD+++EL
Sbjct: 1 MSMRLVEKCVKLSTHKNFLACNKIGYRPRALHNGPDTIDELLDRHVVKKEKSFDDDEEEL 60
Query: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFENARYESDPEI 120
ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLR+NARKEFE+AR+E+DPEI
Sbjct: 61 ITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEI 120
Query: 121 VTRLLIGGRDAVQSALDKLAEKQMQEINKKQSGRDQ 157
VTRLLIGGRDAVQSALDKLAEKQ QEI+KKQSGRD+
Sbjct: 121 VTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDR 156
BLAST of Lcy01g016000 vs. NCBI nr
Match:
XP_031736624.1 (uncharacterized protein LOC101214249 [Cucumis sativus] >KGN62269.1 hypothetical protein Csa_018772 [Cucumis sativus])
HSP 1 Score: 266.5 bits (680), Expect = 1.4e-67
Identity = 134/158 (84.81%), Postives = 148/158 (93.67%), Query Frame = 0
Query: 1 MTMRLLGKCFNL-SVHKNSLACNKIVFYPRVLHNGPDTIDELLDRHVVKKKKSYDDEDDE 60
MTMRL+GK NL S+HKN L C+KI F+PRVLHNGPDT++ELLDRHVVKK+K +DDEDD+
Sbjct: 1 MTMRLVGKYLNLSSIHKNFLTCSKIGFHPRVLHNGPDTVEELLDRHVVKKEKFFDDEDDK 60
Query: 61 LITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFENARYESDPE 120
LITQRRLT+TRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFE+AR ESDPE
Sbjct: 61 LITQRRLTTTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFEDARLESDPE 120
Query: 121 IVTRLLIGGRDAVQSALDKLAEKQMQEINKKQSGRDQL 158
+VTRLLIGGRDAVQSALDKLAEKQ +EI+KKQ GRDQL
Sbjct: 121 MVTRLLIGGRDAVQSALDKLAEKQREEIDKKQGGRDQL 158
BLAST of Lcy01g016000 vs. TAIR 10
Match:
AT1G76060.1 (LYR family of Fe/S cluster biogenesis protein )
HSP 1 Score: 179.9 bits (455), Expect = 1.6e-45
Identity = 91/126 (72.22%), Postives = 106/126 (84.13%), Query Frame = 0
Query: 29 RVLHNGPDTIDELLDRHVVKKKKSYDDEDD-ELITQRRLTSTRREALSLYRDILRATRFF 88
R LH GPDT++ELL+RH+ KK+K D D+ E + +RRLTSTRREALSLYRDILRATRFF
Sbjct: 29 RFLHEGPDTVEELLERHLAKKEKPIIDHDEAEFLNRRRLTSTRREALSLYRDILRATRFF 88
Query: 89 MWPDSRGVLWRDVLRENARKEFENARYESDPEIVTRLLIGGRDAVQSALDKLAEKQMQEI 148
W DSRG LWRDVLRENARKEFE AR+E+DPE++TRLLIGG DAV SALDKLAEKQ + I
Sbjct: 89 TWIDSRGNLWRDVLRENARKEFEAARFETDPEVITRLLIGGSDAVSSALDKLAEKQREMI 148
Query: 149 NKKQSG 154
K++ G
Sbjct: 149 EKQRRG 154
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1CRY1 | 6.0e-72 | 88.46 | uncharacterized protein LOC111014019 OS=Momordica charantia OX=3673 GN=LOC111014... | [more] |
A0A6J1HEL0 | 2.1e-69 | 85.26 | uncharacterized protein LOC111462339 OS=Cucurbita moschata OX=3662 GN=LOC1114623... | [more] |
A0A0A0LMK5 | 6.8e-68 | 84.81 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G346590 PE=4 SV=1 | [more] |
A0A6J1K786 | 1.7e-66 | 82.69 | uncharacterized protein LOC111492289 OS=Cucurbita maxima OX=3661 GN=LOC111492289... | [more] |
A0A5A7VCD6 | 2.2e-66 | 84.18 | Complex 1 LYR protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82... | [more] |
Match Name | E-value | Identity | Description | |
XP_038884246.1 | 5.5e-72 | 89.03 | uncharacterized protein LOC120075144 [Benincasa hispida] | [more] |
XP_022144304.1 | 1.2e-71 | 88.46 | uncharacterized protein LOC111014019 [Momordica charantia] | [more] |
XP_022961619.1 | 4.4e-69 | 85.26 | uncharacterized protein LOC111462339 [Cucurbita moschata] >XP_022961620.1 unchar... | [more] |
XP_023545212.1 | 2.8e-68 | 85.26 | uncharacterized protein LOC111804691 [Cucurbita pepo subsp. pepo] | [more] |
XP_031736624.1 | 1.4e-67 | 84.81 | uncharacterized protein LOC101214249 [Cucumis sativus] >KGN62269.1 hypothetical ... | [more] |
Match Name | E-value | Identity | Description | |
AT1G76060.1 | 1.6e-45 | 72.22 | LYR family of Fe/S cluster biogenesis protein | [more] |