Lcy01g015010 (gene) Sponge gourd (P93075) v1

Overview
NameLcy01g015010
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr01: 36504734 .. 36505796 (-)
RNA-Seq ExpressionLcy01g015010
SyntenyLcy01g015010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGATCAATTCTGGTTCCTTCTTCTCTAGGACCTCGAAACTAAATTTTAAAAAAATCTTAGCTAGGTTCAAAACTCAAATCAATGCATATCAAGATGGATTTTTTGAGTTATTTAGGAGGCAATTGACTTAGAGCCAAGATTTGTGTAGTTTGAAGTTGTAATGTTGAGTCTAGGGCATGTGAGTAGTGATGGCAAATATTCTTACATGTTATTGTTATATAGAAAGGACCAACTGTTGAGTCAATGAGTTTGACTCGAGATTTAATTGAATGACGTTATAAGTGTTCTATTAGTTTTGGATATATTGGACATTTTCCTTCTTATTGTTTTACAAAATTGATATATCTTGTGATTTTTTAAATATGAAGATTATTTGTTTTTAATTTTTCATATTTATAATATACTATTTTTATTTTTTCAAAAAAAAAAATACTATTTTTATTATATATTTTTATAATTCATTAAAAAAATATATTAGGAATTCAAAGGGTGGATAAACTCGTAGGACATGACAGTTCCGAGAGTGAAAGTCCTAATTAAAAAAAAAAAATTATGAAAAACATATGCTTTTTAAAAAAAGATTAGTAAAAGCAGGGTTTATCTTTTGTCCTTATTGGCCAACAAGAGCATAGTTGACATAAAGTTGTACGGATAACCACGAGTTCTGTGGTTCGAATCCCCCACCCTCACATATTGTCAAAAAAAAAAAAAAACTTTTGTCCTTACTGTATTTCGTCGTTGGGAGGGACGGATTCAAACCCAAAATTGAACAAACTTTACTTAATATTAGGAAAATATTCGCTGCTACAATTTTTTTCCTAGGGAATTGTGGTGGTTATCGGAGATGTCGGCGGTGTAGTAGACAGGAGTGAAGATTGTGACGTCAAAAGCCCAAGCAATGTCCTGAATTCCGACGATCTTGGAGGTGTTGCCGTTGGCCTTATTAGAGTGGACGACAGCCATGATAGTCAAATCGGTGATGTAAAGGAAGAGGAGAGTGGTGAAGAACTTGGCAATTCCGACTCCGTAAAAGGACCATGGCTTCGGCTCGAAGAATGA

mRNA sequence

ATGGGAATTGTGGTGGTTATCGGAGATGTCGGCGGTGTAGTAGACAGGAGTGAAGATTGTGACGTCAAAAGCCCAAGCAATGTCCTGAATTCCGACGATCTTGGAGGTGTTGCCGTTGGCCTTATTAGAGTGGACGACAGCCATGATAGTCAAATCGGTGATGTAAAGGAAGAGGAGAGTGGTGAAGAACTTGGCAATTCCGACTCCGTAAAAGGACCATGGCTTCGGCTCGAAGAATGA

Coding sequence (CDS)

ATGGGAATTGTGGTGGTTATCGGAGATGTCGGCGGTGTAGTAGACAGGAGTGAAGATTGTGACGTCAAAAGCCCAAGCAATGTCCTGAATTCCGACGATCTTGGAGGTGTTGCCGTTGGCCTTATTAGAGTGGACGACAGCCATGATAGTCAAATCGGTGATGTAAAGGAAGAGGAGAGTGGTGAAGAACTTGGCAATTCCGACTCCGTAAAAGGACCATGGCTTCGGCTCGAAGAATGA

Protein sequence

MGIVVVIGDVGGVVDRSEDCDVKSPSNVLNSDDLGGVAVGLIRVDDSHDSQIGDVKEEESGEELGNSDSVKGPWLRLEE
Homology
[Close]
BLAST of Lcy01g015010 vs. ExPASy TrEMBL
Match: A0A0P0WDN7 (Os04g0559750 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0559750 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.9e-05
Identity = 35/73 (47.95%), Postives = 43/73 (58.90%), Query Frame = 0 

Query: 5   VVIGDVGGVVDRSEDCDVKSPSNVLNSDDLGGVAVGLIRVDDSHDSQIGDVKEEESGEEL 64
           V  GD GG VD  ED   + P + L++D  GG   G   V D HD + GDVKEEE G EL
Sbjct: 168 VAAGDAGGAVDEGEDHAAEGPGDALDAD--GGALGG--GVVDPHDGEDGDVKEEEGGHEL 227

Query: 65  GNSDSVKGPWLRL 78
           G+  +V+GP L L
Sbjct: 228 GDPCAVEGPRLEL 236

[Close]
BLAST of Lcy01g015010 vs. ExPASy TrEMBL
Match: A0A0E0DH10 (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.2e-05
Identity = 34/73 (46.58%), Postives = 43/73 (58.90%), Query Frame = 0 

Query: 5   VVIGDVGGVVDRSEDCDVKSPSNVLNSDDLGGVAVGLIRVDDSHDSQIGDVKEEESGEEL 64
           V  GD GG VD  ED   + P + L++D  GG   G   V D HD + GDV+EEE G EL
Sbjct: 124 VAAGDAGGAVDEGEDHAAEGPGDALDAD--GGALGG--GVVDPHDGEDGDVEEEEGGHEL 183

Query: 65  GNSDSVKGPWLRL 78
           G+  +V+GP L L
Sbjct: 184 GDPGAVEGPRLEL 192

[Close]
BLAST of Lcy01g015010 vs. ExPASy TrEMBL
Match: A0A0E0DH09 (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.2e-05
Identity = 34/73 (46.58%), Postives = 43/73 (58.90%), Query Frame = 0 

Query: 5   VVIGDVGGVVDRSEDCDVKSPSNVLNSDDLGGVAVGLIRVDDSHDSQIGDVKEEESGEEL 64
           V  GD GG VD  ED   + P + L++D  GG   G   V D HD + GDV+EEE G EL
Sbjct: 126 VAAGDAGGAVDEGEDHAAEGPGDALDAD--GGALGG--GVVDPHDGEDGDVEEEEGGHEL 185

Query: 65  GNSDSVKGPWLRL 78
           G+  +V+GP L L
Sbjct: 186 GDPGAVEGPRLEL 194

[Close]
BLAST of Lcy01g015010 vs. NCBI nr
Match: KAB8096440.1 (hypothetical protein EE612_024891, partial [Oryza sativa] >BAS90463.1 Os04g0559750, partial [Oryza sativa Japonica Group])

HSP 1 Score: 58.2 bits (139), Expect = 3.8e-05
Identity = 35/73 (47.95%), Postives = 43/73 (58.90%), Query Frame = 0 

Query: 5   VVIGDVGGVVDRSEDCDVKSPSNVLNSDDLGGVAVGLIRVDDSHDSQIGDVKEEESGEEL 64
           V  GD GG VD  ED   + P + L++D  GG   G   V D HD + GDVKEEE G EL
Sbjct: 168 VAAGDAGGAVDEGEDHAAEGPGDALDAD--GGALGG--GVVDPHDGEDGDVKEEEGGHEL 227

Query: 65  GNSDSVKGPWLRL 78
           G+  +V+GP L L
Sbjct: 228 GDPCAVEGPRLEL 236

The following BLAST results are available for this feature:
BLAST of Lcy01g015010 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy01g015010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0P0WDN71.9e-0547.95Os04g0559750 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os04... [more]
A0A0E0DH103.2e-0546.58Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1[more]
A0A0E0DH093.2e-0546.58Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1[more]
BLAST of Lcy01g015010 vs. NCBI nr
Match NameE-valueIdentityDescription
KAB8096440.13.8e-0547.95hypothetical protein EE612_024891, partial [Oryza sativa] >BAS90463.1 Os04g05597... [more]
BLAST of Lcy01g015010 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..79

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy01g015010.1Lcy01g015010.1mRNA