Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATATAGCGAGGCCCAAACACCTAGCCACATTAGTAGGGAAAAATCAAGGCGTGCAGATAATGCCCCTTCCACTGTTTGGGCTTCTCCACCTATCAACCAGTTCAAGCTAAATGTAGATGCAGCAGTCATAGACGGGAACGTGGGTTCGGGAATGATCATTCGAAATCATAAAGGAGAGACGATGGCAGCAGCAGAGTGTTACAGGAAATTAAAATGCTCAGTTGAATGGGCAGAAGCAAAGGCGCTAGTAGATGGTGTTCACCTAGCTCTTGATGCAGGCATATTTCCAATATGGGCAGAAACAGATTCACAAATTGTATGGAATCTTCTGAGCGACCGGGATCAACATTTCAACGAGATTGCTCCTCTTATTCAACACCTAAAGCAATTACAGCTTTCCCACCATATTAGGGGTTTCATGTTAACGCCTAGGGAGGGAAACAGAGTAGCACATACGCTGGCCGTTCATGCTCGCACCACCAAACATGACGAGGTTTGGTTAGAAGATTGTCCTCCATGGGCTCATGGCATCCTTGCTCAAGAGATGCCAACCACAGTTGTCTTACATTAG
mRNA sequence
ATGGAATATAGCGAGGCCCAAACACCTAGCCACATTAGTAGGGAAAAATCAAGGCGTGCAGATAATGCCCCTTCCACTGTTTGGGCTTCTCCACCTATCAACCAGTTCAAGCTAAATGTAGATGCAGCAGTCATAGACGGGAACGTGGGTTCGGGAATGATCATTCGAAATCATAAAGGAGAGACGATGGCAGCAGCAGAGTGTTACAGGAAATTAAAATGCTCAGTTGAATGGGCAGAAGCAAAGGCGCTAGTAGATGGTGTTCACCTAGCTCTTGATGCAGGCATATTTCCAATATGGGCAGAAACAGATTCACAAATTGTATGGAATCTTCTGAGCGACCGGGATCAACATTTCAACGAGATTGCTCCTCTTATTCAACACCTAAAGCAATTACAGCTTTCCCACCATATTAGGGGTTTCATGTTAACGCCTAGGGAGGGAAACAGAGTAGCACATACGCTGGCCGTTCATGCTCGCACCACCAAACATGACGAGGTTTGGTTAGAAGATTGTCCTCCATGGGCTCATGGCATCCTTGCTCAAGAGATGCCAACCACAGTTGTCTTACATTAG
Coding sequence (CDS)
ATGGAATATAGCGAGGCCCAAACACCTAGCCACATTAGTAGGGAAAAATCAAGGCGTGCAGATAATGCCCCTTCCACTGTTTGGGCTTCTCCACCTATCAACCAGTTCAAGCTAAATGTAGATGCAGCAGTCATAGACGGGAACGTGGGTTCGGGAATGATCATTCGAAATCATAAAGGAGAGACGATGGCAGCAGCAGAGTGTTACAGGAAATTAAAATGCTCAGTTGAATGGGCAGAAGCAAAGGCGCTAGTAGATGGTGTTCACCTAGCTCTTGATGCAGGCATATTTCCAATATGGGCAGAAACAGATTCACAAATTGTATGGAATCTTCTGAGCGACCGGGATCAACATTTCAACGAGATTGCTCCTCTTATTCAACACCTAAAGCAATTACAGCTTTCCCACCATATTAGGGGTTTCATGTTAACGCCTAGGGAGGGAAACAGAGTAGCACATACGCTGGCCGTTCATGCTCGCACCACCAAACATGACGAGGTTTGGTTAGAAGATTGTCCTCCATGGGCTCATGGCATCCTTGCTCAAGAGATGCCAACCACAGTTGTCTTACATTAG
Protein sequence
MEYSEAQTPSHISREKSRRADNAPSTVWASPPINQFKLNVDAAVIDGNVGSGMIIRNHKGETMAAAECYRKLKCSVEWAEAKALVDGVHLALDAGIFPIWAETDSQIVWNLLSDRDQHFNEIAPLIQHLKQLQLSHHIRGFMLTPREGNRVAHTLAVHARTTKHDEVWLEDCPPWAHGILAQEMPTTVVLH
Homology
BLAST of Lcy01g013160 vs. ExPASy TrEMBL
Match:
A0A5C7H0P0 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_022911 PE=4 SV=1)
HSP 1 Score: 102.4 bits (254), Expect = 2.1e-18
Identity = 57/163 (34.97%), Postives = 89/163 (54.60%), Query Frame = 0
Query: 28 WASPPINQFKLNVDAA--VIDGNVGSGMIIRNHKGETMAAAECYRKLKCSVEWAEAKALV 87
W +P +FK+N DA+ + G G G+IIR++KG +AA SVE EA+A +
Sbjct: 273 WKTPKRGEFKINCDASFQLRSGKAGVGVIIRDYKGSAIAARSSPVLCCSSVEMLEAQACL 332
Query: 88 DGVHLALDAGIFPIWAETDSQIVWNLLSDRDQHFNEIAPLIQHLKQLQLSHHIRGFMLTP 147
+G+HLA+D G+ + E+D+ V LLSD+ E+ +I L S ++ ++
Sbjct: 333 EGIHLAIDIGVSGVIIESDAASVIQLLSDQTVPRTELGAIIHTSLALGASVNLLSYVAVR 392
Query: 148 REGNRVAHTLAVHARTTKHDEVWLEDCPPWAHGILAQEMPTTV 189
RE N VAH +A HA + VW E+ PP ++ + PT+V
Sbjct: 393 REANSVAHCIAQHALSLDSPVVWFEEMPPDIARLVRGDSPTSV 435
BLAST of Lcy01g013160 vs. ExPASy TrEMBL
Match:
A0A6J1CIF1 (uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011237 PE=4 SV=1)
HSP 1 Score: 97.8 bits (242), Expect = 5.1e-17
Identity = 59/175 (33.71%), Postives = 86/175 (49.14%), Query Frame = 0
Query: 1 MEYSEAQTPSHISREKSRRADNAPSTVWASPPINQFKLNVDAAVI--DGNVGSGMIIRNH 60
ME+ EA S R N +W P +K+N DA+ + D + G G+IIRN
Sbjct: 12 MEFREAN-----SNPFPGRVTNTAEVLWLPPDKRIYKINTDASFLASDQHAGLGIIIRND 71
Query: 61 KGETMAAAECYRKLKCSVEWAEAKALVDGVHLALDAGIFPIWAETDSQIVWNLLSDRDQH 120
+G+ MA+A Y + SV+ AEA V+G+ LA G+ P+ ETDS ++NL S +
Sbjct: 72 RGQVMASATKYLENIQSVDMAEAIVAVEGLQLASKIGVNPVILETDSSRIFNLFSQPSED 131
Query: 121 FNEIAPLIQHLKQLQLSHHIRGFMLTPREGNRVAHTLAVHARTTKHDEVWLEDCP 174
+E ++ K F REGN+ AH LA A + +W+ED P
Sbjct: 132 LSETGEIVLKAKNFWTQSLHASFNFVKREGNKAAHMLARRALLLREFSIWMEDWP 181
BLAST of Lcy01g013160 vs. ExPASy TrEMBL
Match:
A0A7J9D462 (Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_021255 PE=4 SV=1)
HSP 1 Score: 92.4 bits (228), Expect = 2.1e-15
Identity = 54/148 (36.49%), Postives = 73/148 (49.32%), Query Frame = 0
Query: 28 WASPPINQFKLNVDAAVIDGN--VGSGMIIRNHKGETMAAAECYRKLKCSVEWAEAKALV 87
W+ PP FK+NVDA V N V + IIRN +G M + L SV AEA A++
Sbjct: 169 WSPPPQGWFKVNVDAGVSIANNRVVTDFIIRNDEGFIMGSGFQRHNLVLSVVIAEAIAVL 228
Query: 88 DGVHLALDAGIFPIWAETDSQIVWNLLSDRDQHFNEIAPLIQHLKQLQLSHHIRGFMLTP 147
G+ ALD G + E+DS++V N + + ++E P +K L H F
Sbjct: 229 HGLQFALDMGFSRVILESDSRLVVNNIQKSSEDYSESRPFTWDVKNLARKFHCCRFQFVA 288
Query: 148 REGNRVAHTLAVHARTTKHDEVWLEDCP 174
REGN AH L V + D W+ED P
Sbjct: 289 REGNGAAHALVVEGMQAEGDSFWVEDAP 316
BLAST of Lcy01g013160 vs. ExPASy TrEMBL
Match:
A0A2N9EU90 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6036 PE=4 SV=1)
HSP 1 Score: 92.4 bits (228), Expect = 2.1e-15
Identity = 64/174 (36.78%), Postives = 89/174 (51.15%), Query Frame = 0
Query: 4 SEAQTPSHISREKSRRADNAPSTVWASPPINQFKLNVDAAVI-DGN-VGSGMIIRNHKGE 63
SE Q S + +R+A W+ P ++K+N DAA D N VG G+IIRNH GE
Sbjct: 485 SEFQEVQESSTQPTRQAVPLQRVTWSPPQPGRYKVNYDAAFFGDSNEVGIGVIIRNHNGE 544
Query: 64 TMAAAECYR-KLKCSVEWAEAKALVDGVHLALDAGIFPIWAETDSQIVWNLLSDRDQHFN 123
MA+ C+R SVE EA A + +A+D G+ I E DSQ V + L + F
Sbjct: 545 VMASL-CHRIHYPHSVEAMEAYAARSAIQMAIDLGLQAIDIEGDSQTVVDALLNHAPCFT 604
Query: 124 EIAPLIQHLKQLQLSHHIRGFMLTPREGNRVAHTLAVHARTTKHDEVWLEDCPP 175
LI S H F+ R+GN +AH++A A+ ++ EVW+E PP
Sbjct: 605 LYGNLINDTNIATQSCHFVQFLHVKRDGNSIAHSIAKRAKFSQPFEVWMESVPP 657
BLAST of Lcy01g013160 vs. ExPASy TrEMBL
Match:
A0A6P5S7Q3 (uncharacterized protein LOC110753261 OS=Prunus avium OX=42229 GN=LOC110753261 PE=4 SV=1)
HSP 1 Score: 90.5 bits (223), Expect = 8.2e-15
Identity = 55/160 (34.38%), Postives = 82/160 (51.25%), Query Frame = 0
Query: 28 WASPPINQFKLNVDAAVI--DGNVGSGMIIRNHKGETMAAAECYRKLKCSVEWAEAKALV 87
W+ PP+ ++KLNVDAA I G G G ++RN KGE MAA S + AE AL
Sbjct: 59 WSPPPVGRYKLNVDAAFIPETGVSGIGAVVRNDKGEVMAAMALPLANATSSKHAEIMALQ 118
Query: 88 DGVHLALDAGIFPIWAETDSQ-IVWNLLSDRDQHFNEIAPLIQHLKQLQLSHHIRGFMLT 147
G++ A DAG E+DSQ +V ++ D ++ + LI +K+ +
Sbjct: 119 FGMNFARDAGFSSFLMESDSQGVVNDVKKDEEESWASDGHLIDDIKRSLQHFEEVTISFS 178
Query: 148 PREGNRVAHTLAVHARTTKHDEVWLEDCPPWAHGILAQEM 185
PR N+VAH LA HA + W+E+ P W ++ ++
Sbjct: 179 PRRCNQVAHFLARHALNCDNMVTWIEEVPFWLDSVVNDDI 218
BLAST of Lcy01g013160 vs. NCBI nr
Match:
TXG50387.1 (hypothetical protein EZV62_022911 [Acer yangbiense])
HSP 1 Score: 102.4 bits (254), Expect = 4.3e-18
Identity = 57/163 (34.97%), Postives = 89/163 (54.60%), Query Frame = 0
Query: 28 WASPPINQFKLNVDAA--VIDGNVGSGMIIRNHKGETMAAAECYRKLKCSVEWAEAKALV 87
W +P +FK+N DA+ + G G G+IIR++KG +AA SVE EA+A +
Sbjct: 273 WKTPKRGEFKINCDASFQLRSGKAGVGVIIRDYKGSAIAARSSPVLCCSSVEMLEAQACL 332
Query: 88 DGVHLALDAGIFPIWAETDSQIVWNLLSDRDQHFNEIAPLIQHLKQLQLSHHIRGFMLTP 147
+G+HLA+D G+ + E+D+ V LLSD+ E+ +I L S ++ ++
Sbjct: 333 EGIHLAIDIGVSGVIIESDAASVIQLLSDQTVPRTELGAIIHTSLALGASVNLLSYVAVR 392
Query: 148 REGNRVAHTLAVHARTTKHDEVWLEDCPPWAHGILAQEMPTTV 189
RE N VAH +A HA + VW E+ PP ++ + PT+V
Sbjct: 393 REANSVAHCIAQHALSLDSPVVWFEEMPPDIARLVRGDSPTSV 435
BLAST of Lcy01g013160 vs. NCBI nr
Match:
XP_030923211.1 (uncharacterized protein LOC115950102 [Quercus lobata])
HSP 1 Score: 99.0 bits (245), Expect = 4.7e-17
Identity = 56/151 (37.09%), Postives = 77/151 (50.99%), Query Frame = 0
Query: 26 TVWASPPINQFKLNVDAAVID--GNVGSGMIIRNHKGETMAAAECYRKLKCSVEWAEAKA 85
TVW PP + FKLN DAA+ +G G+II N+KGE MAA R S E E A
Sbjct: 6 TVWKPPPESAFKLNFDAAIFSELNRIGVGVIIHNYKGEVMAAMSARRPAVHSCEEGELLA 65
Query: 86 LVDGVHLALDAGIFPIWAETDSQIVWNLLSDRDQHFNEIAPLIQHLKQLQLSHHIRGFML 145
V A+DAG + E + V +S ++ + + + +++ +K L
Sbjct: 66 CRKAVEFAIDAGFSRLVLEGGNVNVMQAISSQEANISLLGTVVEDIKHLIRGLQWVSISH 125
Query: 146 TPREGNRVAHTLAVHARTTKHDEVWLEDCPP 175
T R GN+VAH L HART+ D W+ED PP
Sbjct: 126 TRRSGNKVAHVLVQHARTSIEDLYWIEDSPP 156
BLAST of Lcy01g013160 vs. NCBI nr
Match:
XP_022140628.1 (uncharacterized protein LOC111011237 [Momordica charantia])
HSP 1 Score: 97.8 bits (242), Expect = 1.1e-16
Identity = 59/175 (33.71%), Postives = 86/175 (49.14%), Query Frame = 0
Query: 1 MEYSEAQTPSHISREKSRRADNAPSTVWASPPINQFKLNVDAAVI--DGNVGSGMIIRNH 60
ME+ EA S R N +W P +K+N DA+ + D + G G+IIRN
Sbjct: 12 MEFREAN-----SNPFPGRVTNTAEVLWLPPDKRIYKINTDASFLASDQHAGLGIIIRND 71
Query: 61 KGETMAAAECYRKLKCSVEWAEAKALVDGVHLALDAGIFPIWAETDSQIVWNLLSDRDQH 120
+G+ MA+A Y + SV+ AEA V+G+ LA G+ P+ ETDS ++NL S +
Sbjct: 72 RGQVMASATKYLENIQSVDMAEAIVAVEGLQLASKIGVNPVILETDSSRIFNLFSQPSED 131
Query: 121 FNEIAPLIQHLKQLQLSHHIRGFMLTPREGNRVAHTLAVHARTTKHDEVWLEDCP 174
+E ++ K F REGN+ AH LA A + +W+ED P
Sbjct: 132 LSETGEIVLKAKNFWTQSLHASFNFVKREGNKAAHMLARRALLLREFSIWMEDWP 181
BLAST of Lcy01g013160 vs. NCBI nr
Match:
XP_023899877.1 (uncharacterized protein LOC112011763 [Quercus suber])
HSP 1 Score: 96.7 bits (239), Expect = 2.4e-16
Identity = 60/165 (36.36%), Postives = 86/165 (52.12%), Query Frame = 0
Query: 23 APSTV-WASPPINQFKLNVDAAVI-DGNV-GSGMIIRNHKGETMAAAECYRKLKCSVEWA 82
AP+ + W PP + +KLN DAA+ D N G G IIRN +GE MA L + A
Sbjct: 31 APARISWKPPPTSTYKLNFDAAIFADLNCSGFGAIIRNEEGEVMAGMSVKGPLSLNSAEA 90
Query: 83 EAKALVDGVHLALDAGIFPIWAETDSQIVWNLLSDRDQHFNEIAPLIQHLKQLQLSHHIR 142
EA A VH AL+AG + E D+ +V N +S ++ + + + + ++ L
Sbjct: 91 EALACRRAVHFALEAGFSRLVIEGDNALVMNAISCSAENNSLLGHIFEDIQHLVRGLQYV 150
Query: 143 GFMLTPREGNRVAHTLAVHARTTKHDEVWLEDCPPWAHGILAQEM 185
R+GN VAH+LA HART + W+ED PP A L Q++
Sbjct: 151 SISCIKRDGNMVAHSLARHARTISDEMYWMEDSPPPAVNALYQDL 195
BLAST of Lcy01g013160 vs. NCBI nr
Match:
KAG6608327.1 (hypothetical protein SDJN03_01669, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 95.5 bits (236), Expect = 5.2e-16
Identity = 52/140 (37.14%), Postives = 76/140 (54.29%), Query Frame = 0
Query: 28 WASPPINQFKLNVDAAVIDGNVGSGMIIRNHKGETMAAAECYRKLKCSVEWAEAKALVDG 87
W S P +Q KL+VDA + + +G M + + A K G
Sbjct: 22 WVSLPHDQDKLSVDATMHNEEMGCQMGL------------------FEIPKALGKDSSRG 81
Query: 88 VHLALDAGIFPIWAETDSQIVWNLLSDRDQHFNEIAPLIQHLKQLQLSHHIRGFMLTPRE 147
L + G+ +W + +S++VW LL D+DQHF EIA LI+HLK L +H I+GF+ TP++
Sbjct: 82 NQLGMATGLTSVWPKVNSKVVWTLLMDQDQHFIEIAHLIKHLKHLSQNHCIKGFLPTPKD 141
Query: 148 GNRVAHTLAVHARTTKHDEV 168
+ HTLA+HA TKH E+
Sbjct: 142 DTKATHTLAIHAWHTKHLEI 143
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5C7H0P0 | 2.1e-18 | 34.97 | Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_022911 PE=4 SV=1 | [more] |
A0A6J1CIF1 | 5.1e-17 | 33.71 | uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011... | [more] |
A0A7J9D462 | 2.1e-15 | 36.49 | Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_021255 PE=4 ... | [more] |
A0A2N9EU90 | 2.1e-15 | 36.78 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6036 PE=4 SV=1 | [more] |
A0A6P5S7Q3 | 8.2e-15 | 34.38 | uncharacterized protein LOC110753261 OS=Prunus avium OX=42229 GN=LOC110753261 PE... | [more] |
Match Name | E-value | Identity | Description | |
TXG50387.1 | 4.3e-18 | 34.97 | hypothetical protein EZV62_022911 [Acer yangbiense] | [more] |
XP_030923211.1 | 4.7e-17 | 37.09 | uncharacterized protein LOC115950102 [Quercus lobata] | [more] |
XP_022140628.1 | 1.1e-16 | 33.71 | uncharacterized protein LOC111011237 [Momordica charantia] | [more] |
XP_023899877.1 | 2.4e-16 | 36.36 | uncharacterized protein LOC112011763 [Quercus suber] | [more] |
KAG6608327.1 | 5.2e-16 | 37.14 | hypothetical protein SDJN03_01669, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |