Lcy01g012390 (gene) Sponge gourd (P93075) v1

Overview
NameLcy01g012390
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr01: 33313522 .. 33315895 (+)
RNA-Seq ExpressionLcy01g012390
SyntenyLcy01g012390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGAGATCAGAGCTTCAACGCCGCCGCATGACGACGGCGCAGGGACGTTTTCAGGCGGGAAAGAAGAAGCGTCAGTGATGGATCGCGTTAAGAAGGGGTGCACGTCCTTTTATGCTTCCTCTCAAGAGACACTACGCTATGTCAAAGCCTTTTTCGTTGGTTGGGTGAGTTTATTTATGTTTTTGTTAATTTCACTTTTAAAATACGTATATTTTTGGAAAATACTTCTGCATACTAGACTAGTATACTGGTACTTCCCTACCGACTACCGTTTGACAATTAATGAATTAAGAAAGATTTTATACAATGTAATGCATCCAAATATTATTCTATATATATATATATATATATATATTTTTTTTTTCTCGTTGTAATATCAATAAAAAAAAAAAAGATTCAACAAAACCAGTTTAGTGACACTAAAAATAATTGGTCAAAGAGAAAATGAACGCATGATCAATCAACCCAAAAGTTTAAATTAATGGATTAGGATAAATTTAAGATAGGCTAAATTATAAAAAATGCCCTTGAACTATGAGGTTTGTTTCAAAAATGTCCCTGAACTTTCAAAAGTTTAAAAAATACCCCTGAACTTTGAAGAATGTTTCAAAAATACCCTTGCTGTTAATTTTGGATGGAAACCGTTAAAGTTTGAGTTTCAAAAATACCCTTGAACTTTCAAAAAAAATTCAAAAATACCCTTATTGAAAAATGATTCTTCTTTTTTCCTCCTCTCTCACCGTAAATTTTTTCTCCATGAAAATTAATGCAAAATGTTGCTTATAAAGGTTGTGTGCAACTCAATACCAAATAAAAAAAGACTTTGAAATCAAGTTTTCTCTTTTAAAAAGCGTAAAAAAGATAAGTGTGAGAAAACAACATATATATGTATATATATTATTTCATTTTTTGCTCTCTCTTTGTTTGTGTATCTTAATGATAAGACGAAGAAATGTTTATAAGACGGTGAGTTTGGTCCAATTTATAAGATTAATCAATCAAAAGTTTTATATATGATTTTGTTCTTATTGATATTTAAGAATTGTTAGAATCTTTATACAACAATAGTTTCATTTATTTTTCGTAATAGGAATATAGAGAAAGCTAGGAAATAATATTGAAAAGACTACCAACACATGTAAAATTTCAAGAACAAAACAAAAGTCATCTTGAAGATTCGATACGAAAATCTAGCAAAGTGCTTTAGATGTGTTGAAAGAGAAAGAAAGCTCCTAGATTATGAATACATGACAAATAAGTAAAGTTTCTCATTAATTTTTGGAAGAAGAGTTAATTTACGGTGGGAGAAGGAAAAAAAAAAGAAGCATTTTTCAATAAGGGTATTTTTGATTTTTTTTTTTAAAGTTCAAGGGTATTTTTGAAACTCAAACTTTAACGGTTTCCATCCAAAATTAACGGCAAGGGTATTTTTGAAACATTTTTTAAAGTTCAGGAGTATTTTTGAAACTTTTGAAAGTTCAGGGGCATTTTTGAAACAAACCCCATAGTTCAAGGGTATTTTTTATAATTTAGCCTTTAAGATATTAATGTTAGTTTTTTAGGTTGGCAAATGTTGATTTTTTTTTCTTTCATTTTTTACCTTATTTTAATTATCAAAATTTTAATATAAAGATAAGTATCGACATGCAGTATGAAATAACTATTAGATATATAATCAATGTTCTTTTTTTTTTTGGAAACATACATTATCGAAGGGCCCGTTTGGTAACGTTCTCGTTTCTTGTTTCTTGTTTCCAATTTTATTAAAAAATCTAAGTATTTAATAACTATGTGTGTTTCTTGTTTCTCATTTTTTAGAAAAACTCCCAACATTTGTATAGAACTTTTGGGAACAAATAAAACTAGTTTCTCTTTTTTTCTTGTTTCCAATTTTTTCCAAACATAAATAAGAATATAGGTTTATTATTATTGAATGTATAAGCGTTAGAGTCATGAAATTCTATTTTTCTTTATTAAAAACGAAGAAATGGTAACAAGAAACAAGAACGTTACCAAACGGGCTCGAAGTTTCTTTTAATTCAACCACACAGTTGTTTCAACAATATTTGGATAGAAAATTCGAATCTCTAACCTTTTGATGGGGATATATGCCAATTACTGTTGACTATGCCTACCTCGTTGTTTGTGTAGTTTTTCACTCATTTATGAAACGGTATAAAACTAACGGTTAAGTTGTGGTAGATTTTAATAAGGCGATGTTTGGTTGGTGTGGTTGGCTGGTAGGGAAAGAAGATGACAGCAAAGAGCGAGAAGGAAGTGGCAGAAGCAGAATTAAAGTCGGCCAAAATGCAGGTTGAAGCTACCGAGGCCGCAGAGAACACCAAGAAGCAACTTAACAAATCAATGTAA

mRNA sequence

ATGGACGAGATCAGAGCTTCAACGCCGCCGCATGACGACGGCGCAGGGACGTTTTCAGGCGGGAAAGAAGAAGCGTCAGTGATGGATCGCGTTAAGAAGGGGTGCACGTCCTTTTATGCTTCCTCTCAAGAGACACTACGCTATGTCAAAGCCTTTTTCGTTGGTTGGGGAAAGAAGATGACAGCAAAGAGCGAGAAGGAAGTGGCAGAAGCAGAATTAAAGTCGGCCAAAATGCAGGTTGAAGCTACCGAGGCCGCAGAGAACACCAAGAAGCAACTTAACAAATCAATGTAA

Coding sequence (CDS)

ATGGACGAGATCAGAGCTTCAACGCCGCCGCATGACGACGGCGCAGGGACGTTTTCAGGCGGGAAAGAAGAAGCGTCAGTGATGGATCGCGTTAAGAAGGGGTGCACGTCCTTTTATGCTTCCTCTCAAGAGACACTACGCTATGTCAAAGCCTTTTTCGTTGGTTGGGGAAAGAAGATGACAGCAAAGAGCGAGAAGGAAGTGGCAGAAGCAGAATTAAAGTCGGCCAAAATGCAGGTTGAAGCTACCGAGGCCGCAGAGAACACCAAGAAGCAACTTAACAAATCAATGTAA

Protein sequence

MDEIRASTPPHDDGAGTFSGGKEEASVMDRVKKGCTSFYASSQETLRYVKAFFVGWGKKMTAKSEKEVAEAELKSAKMQVEATEAAENTKKQLNKSM
Homology
BLAST of Lcy01g012390 vs. ExPASy TrEMBL
Match: A0A6J1KRV8 (uncharacterized protein LOC111495934 OS=Cucurbita maxima OX=3661 GN=LOC111495934 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 7.5e-33
Identity = 81/92 (88.04%), Postives = 83/92 (90.22%), Query Frame = 0

Query: 1  MDEIRASTPP-HDDGAGTFSGGKEEASVMDRVKKGCTSFYASSQETLRYVKAFFVGWGKK 60
          MDEIRASTPP  DDGAG FSG KEEASVMDRVKKGC + YASSQE LRYVKAFFVGWGKK
Sbjct: 1  MDEIRASTPPLQDDGAGRFSGWKEEASVMDRVKKGCMAVYASSQEALRYVKAFFVGWGKK 60

Query: 61 MTAKSEKEVAEAELKSAKMQVEATEAAENTKK 92
          MTAKSEKE AEA+LK AKMQVEATEAAENTKK
Sbjct: 61 MTAKSEKEAAEADLKMAKMQVEATEAAENTKK 92

BLAST of Lcy01g012390 vs. ExPASy TrEMBL
Match: A0A6J1GHI8 (uncharacterized protein LOC111454014 OS=Cucurbita moschata OX=3662 GN=LOC111454014 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.4e-31
Identity = 79/96 (82.29%), Postives = 82/96 (85.42%), Query Frame = 0

Query: 1  MDEIRAST-----PPHDDGAGTFSGGKEEASVMDRVKKGCTSFYASSQETLRYVKAFFVG 60
          MDEIRAST     PP D+GAG FSG KEEASVMDRVKKGC + YASSQE LRYVKAFFVG
Sbjct: 1  MDEIRASTPPPPPPPQDEGAGRFSGSKEEASVMDRVKKGCRAVYASSQEALRYVKAFFVG 60

Query: 61 WGKKMTAKSEKEVAEAELKSAKMQVEATEAAENTKK 92
          WGKKMTAKSEKE AEA+LK AKMQVEATEAAEN KK
Sbjct: 61 WGKKMTAKSEKEAAEADLKMAKMQVEATEAAENAKK 96

BLAST of Lcy01g012390 vs. ExPASy TrEMBL
Match: A0A5A7VBV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004430 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 7.0e-31
Identity = 77/92 (83.70%), Postives = 82/92 (89.13%), Query Frame = 0

Query: 1  MDEIRA--STPPHDDGAGTFSGGKEEASVMDRVKKGCTSFYASSQETLRYVKAFFVGWGK 60
          MDE RA  STPP DDGA  FSG K+EASVMDRVKKGCTSFYASSQETL YVKAFFVGWGK
Sbjct: 1  MDETRAATSTPPQDDGARAFSGRKQEASVMDRVKKGCTSFYASSQETLGYVKAFFVGWGK 60

Query: 61 KMTAKSEKEVAEAELKSAKMQVEATEAAENTK 91
          K+TAKSEKE AEA+LK+AKMQV+ATEAAEN K
Sbjct: 61 KITAKSEKEAAEADLKTAKMQVQATEAAENLK 92

BLAST of Lcy01g012390 vs. ExPASy TrEMBL
Match: A0A1S3BC67 (uncharacterized protein LOC103488109 OS=Cucumis melo OX=3656 GN=LOC103488109 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.6e-30
Identity = 76/92 (82.61%), Postives = 82/92 (89.13%), Query Frame = 0

Query: 1  MDEIRA--STPPHDDGAGTFSGGKEEASVMDRVKKGCTSFYASSQETLRYVKAFFVGWGK 60
          MDE RA  STPP DDGA  FSG K+EASVMDRVKKGCTSFYASSQETL YVKAFFVGWGK
Sbjct: 1  MDETRAATSTPPQDDGARAFSGRKQEASVMDRVKKGCTSFYASSQETLGYVKAFFVGWGK 60

Query: 61 KMTAKSEKEVAEAELKSAKMQVEATEAAENTK 91
          K+TAKSEKE AEA+L++AKMQV+ATEAAEN K
Sbjct: 61 KITAKSEKEAAEADLRTAKMQVQATEAAENLK 92

BLAST of Lcy01g012390 vs. ExPASy TrEMBL
Match: A0A6J1BRY6 (uncharacterized protein LOC111005010 OS=Momordica charantia OX=3673 GN=LOC111005010 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.0e-21
Identity = 56/67 (83.58%), Postives = 63/67 (94.03%), Query Frame = 0

Query: 28 MDRVKKGCTSFYASSQETLRYVKAFFVGWGKKMTAKSEKEVAEAELKSAKMQVEATEAAE 87
          MDR+K GC SFYASSQETLRYVKAFFVGWGKKMTAK+E+E A+A+LK+AKMQV+ATEAAE
Sbjct: 1  MDRIKSGCMSFYASSQETLRYVKAFFVGWGKKMTAKTEEEAAKADLKTAKMQVQATEAAE 60

Query: 88 NTKKQLN 95
          NTK QLN
Sbjct: 61 NTKNQLN 67

BLAST of Lcy01g012390 vs. NCBI nr
Match: XP_023001883.1 (uncharacterized protein LOC111495934 [Cucurbita maxima])

HSP 1 Score: 149.4 bits (376), Expect = 1.6e-32
Identity = 81/92 (88.04%), Postives = 83/92 (90.22%), Query Frame = 0

Query: 1  MDEIRASTPP-HDDGAGTFSGGKEEASVMDRVKKGCTSFYASSQETLRYVKAFFVGWGKK 60
          MDEIRASTPP  DDGAG FSG KEEASVMDRVKKGC + YASSQE LRYVKAFFVGWGKK
Sbjct: 1  MDEIRASTPPLQDDGAGRFSGWKEEASVMDRVKKGCMAVYASSQEALRYVKAFFVGWGKK 60

Query: 61 MTAKSEKEVAEAELKSAKMQVEATEAAENTKK 92
          MTAKSEKE AEA+LK AKMQVEATEAAENTKK
Sbjct: 61 MTAKSEKEAAEADLKMAKMQVEATEAAENTKK 92

BLAST of Lcy01g012390 vs. NCBI nr
Match: XP_022951050.1 (uncharacterized protein LOC111454014 [Cucurbita moschata] >KAG6585352.1 hypothetical protein SDJN03_18085, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 145.2 bits (365), Expect = 2.9e-31
Identity = 79/96 (82.29%), Postives = 82/96 (85.42%), Query Frame = 0

Query: 1  MDEIRAST-----PPHDDGAGTFSGGKEEASVMDRVKKGCTSFYASSQETLRYVKAFFVG 60
          MDEIRAST     PP D+GAG FSG KEEASVMDRVKKGC + YASSQE LRYVKAFFVG
Sbjct: 1  MDEIRASTPPPPPPPQDEGAGRFSGSKEEASVMDRVKKGCRAVYASSQEALRYVKAFFVG 60

Query: 61 WGKKMTAKSEKEVAEAELKSAKMQVEATEAAENTKK 92
          WGKKMTAKSEKE AEA+LK AKMQVEATEAAEN KK
Sbjct: 61 WGKKMTAKSEKEAAEADLKMAKMQVEATEAAENAKK 96

BLAST of Lcy01g012390 vs. NCBI nr
Match: KAG7020262.1 (hypothetical protein SDJN02_16945, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.4 bits (363), Expect = 5.0e-31
Identity = 79/98 (80.61%), Postives = 82/98 (83.67%), Query Frame = 0

Query: 1  MDEIRAST-------PPHDDGAGTFSGGKEEASVMDRVKKGCTSFYASSQETLRYVKAFF 60
          MDEIRAST       PP D+GAG FSG KEEASVMDRVKKGC + YASSQE LRYVKAFF
Sbjct: 1  MDEIRASTPPPPPPPPPQDEGAGRFSGSKEEASVMDRVKKGCRAVYASSQEALRYVKAFF 60

Query: 61 VGWGKKMTAKSEKEVAEAELKSAKMQVEATEAAENTKK 92
          VGWGKKMTAKSEKE AEA+LK AKMQVEATEAAEN KK
Sbjct: 61 VGWGKKMTAKSEKEAAEADLKMAKMQVEATEAAENAKK 98

BLAST of Lcy01g012390 vs. NCBI nr
Match: KAA0065108.1 (hypothetical protein E6C27_scaffold82G004430 [Cucumis melo var. makuwa])

HSP 1 Score: 142.9 bits (359), Expect = 1.5e-30
Identity = 77/92 (83.70%), Postives = 82/92 (89.13%), Query Frame = 0

Query: 1  MDEIRA--STPPHDDGAGTFSGGKEEASVMDRVKKGCTSFYASSQETLRYVKAFFVGWGK 60
          MDE RA  STPP DDGA  FSG K+EASVMDRVKKGCTSFYASSQETL YVKAFFVGWGK
Sbjct: 1  MDETRAATSTPPQDDGARAFSGRKQEASVMDRVKKGCTSFYASSQETLGYVKAFFVGWGK 60

Query: 61 KMTAKSEKEVAEAELKSAKMQVEATEAAENTK 91
          K+TAKSEKE AEA+LK+AKMQV+ATEAAEN K
Sbjct: 61 KITAKSEKEAAEADLKTAKMQVQATEAAENLK 92

BLAST of Lcy01g012390 vs. NCBI nr
Match: XP_038886259.1 (uncharacterized protein LOC120076486 [Benincasa hispida])

HSP 1 Score: 142.1 bits (357), Expect = 2.5e-30
Identity = 78/92 (84.78%), Postives = 83/92 (90.22%), Query Frame = 0

Query: 1  MDEIRA-STPPHDDGAGTFSGGKEEASVMDRVKKGCTSFYASSQETLRYVKAFFVGWGKK 60
          MDEIRA STPP DDGAGTFSG K+EASVMD VKKG   F ASSQETLRYVKAFFVGWGKK
Sbjct: 1  MDEIRASSTPPQDDGAGTFSGRKQEASVMDGVKKGWRFFCASSQETLRYVKAFFVGWGKK 60

Query: 61 MTAKSEKEVAEAELKSAKMQVEATEAAENTKK 92
          MTAKSEKE AEA+LK+AKMQV+ATEAAENTK+
Sbjct: 61 MTAKSEKEAAEADLKTAKMQVQATEAAENTKR 92

BLAST of Lcy01g012390 vs. TAIR 10
Match: AT2G38465.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.4 bits (176), Expect = 2.2e-13
Identity = 40/71 (56.34%), Postives = 50/71 (70.42%), Query Frame = 0

Query: 26 SVMDRVKKGCTSFYASSQETLRYVKAFFVGWGKKMTAKSEKEVAEAELKSAKMQVEATEA 85
          S+ DRVK  C S   + QE   YVKAFFVG  K++TAK+EKE  EA L   KMQV+AT+ 
Sbjct: 13 SLSDRVKTNCLSMAVTCQEGFSYVKAFFVGQTKRLTAKNEKEATEAHLTETKMQVDATDE 72

Query: 86 AENTKKQLNKS 97
          AEN KK+L++S
Sbjct: 73 AENAKKRLHQS 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1KRV87.5e-3388.04uncharacterized protein LOC111495934 OS=Cucurbita maxima OX=3661 GN=LOC111495934... [more]
A0A6J1GHI81.4e-3182.29uncharacterized protein LOC111454014 OS=Cucurbita moschata OX=3662 GN=LOC1114540... [more]
A0A5A7VBV27.0e-3183.70Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3BC671.6e-3082.61uncharacterized protein LOC103488109 OS=Cucumis melo OX=3656 GN=LOC103488109 PE=... [more]
A0A6J1BRY63.0e-2183.58uncharacterized protein LOC111005010 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
Match NameE-valueIdentityDescription
XP_023001883.11.6e-3288.04uncharacterized protein LOC111495934 [Cucurbita maxima][more]
XP_022951050.12.9e-3182.29uncharacterized protein LOC111454014 [Cucurbita moschata] >KAG6585352.1 hypothet... [more]
KAG7020262.15.0e-3180.61hypothetical protein SDJN02_16945, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA0065108.11.5e-3083.70hypothetical protein E6C27_scaffold82G004430 [Cucumis melo var. makuwa][more]
XP_038886259.12.5e-3084.78uncharacterized protein LOC120076486 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
AT2G38465.12.2e-1356.34unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 59..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy01g012390.1Lcy01g012390.1mRNA