Lcy01g011860 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g011860
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNA polymerase sigma factor sigC
Location	Chr01: 32581655 .. 32588372 (-)
RNA-Seq Expression	Lcy01g011860
Synteny	Lcy01g011860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTCTTTCTTTCTTTCTTTTTTCGTTCCAATTTTCTTTCTTTTCCAAATTCTTAAAAAGGGGATTAAGAATTGGTGGTAGAGAGTTTGCAGTTTCGACGTCCACATTTTGACTCATCAGATTGCATGAGTAATTACTACTTCACCACCAAGCTTCTGCCTCTTCCTGGCTTCGATTTTCACGATGGGAACAAGTTTCAGGCCAAATCTCAAGTGGGCTTTTCAATTTCAGACTCATTCTCGCAAGGGCTCCCCTTCCAAGCTTTCTCCATATGCCTGTTAGTTGTTTTTCTCTGAACCACTTCATGACTTTTTTCTTCAATCATATCTATAACCAAGATATTAAATTAAGAAACAACTTCGATTTGATATCTGGGTCTATGAGTTGTTTGTGAAATTTGAGATGTATTAGTTTGGAGATCATTATCCCTTGTCATGTGATGATGCAATTCAGCGAGCTCCAGTGTGTTCTCGATTGCTTTTCACATTTTTAAGCATGCATTGCTGTACTTTTAATCAATAGTGAGACATTTTAAGTTTCTTTGCGATATACTCAATCATTTGAAGAAGGAAAATTTTGGGGCTTTCTTGGAAATTTTGTATAGAAGATGATGAACTTGTCCCACCAAAATTTTGCTCCCGAATGATTACTGTTATCCGATACAGCATAGATACACATAATCAGAGTCTTGTCACATAGATGAACAGTGGATTTTGAACTTGCTTTAAGTTTTTCTGGGTTTGTTAGGCTCTGAAAGTTTTCCACGGGGACTAATGACTGCAACTGGACTGGTTATGGCTAATTAGTTGTTGGTAACTTCGCCTGTCTATCAATGAAGTGAATATTCAATCTATCCTTCATTTGTTTTTCCTCCTGCTTGGATGCGAGGGTGGAAGAGCCTCATTGCTTAACATATTCTAATTGAATCATTTTTTAAGATTATATCATGATGATTGGCGTTCAAATGCATTAATAAAGTAAGTTAGCACGTTAACGTACTATTTGTAGTCTAATTTTGTTCAGTTCTACATTTTAAAACAGCTAAAGGCAGGGAAGCTTCTTTCAATTCAGCAAGGCTTTCATTCTTCTCTGCTATTTGTGAGGAAGGAGAATCTATCTCTAGAGAAACCTTGAAAACATACACTTGCTTGTCTGAAGCTCCCCAAACCTCAGCTGATGATTTGTTAGATTTGGAAGAGATAGAGGTTAGCCCTTTGCAATAAACTTCACACAATACCCACGTATAGTCTTGACCTCCCTTAGTTTCTTGCTCTTGGTGGTACGGTGATGGGTGTTGAATCCAACAATTAATAGTTTCTACTTGAAAATAATTTTAGATTGTAGTAGTAGCAAGTAGAGTCAAATCTACATGGATTGGTTTGATTTATTTATTGAAAATTAAAAATATAAAATGTAAAATAGGGGTGTTTTGGAATTAATGCTGTAAAACAAAAAGAGATGAGTCAATATGGATAAGAATCAAACTAAATATATAGTTTCAACAGTAGATTCTGCATCTTATCTATGTTATTGTGGGTCTAATTCATCTTATATTTCAGATAAACAGTAGGACAAAGTCACTCAATCATTTGCATTACGGGATAAAAAATACCGGGCGATCCAAGGTAGACGACAATTTTTCTTCCTGTACAAGCTTGCCTACTGGCAAGGCGTCACCTTTTGGAATGTTAATGGAAAACCTTGATGTTTTGGAGGGAACTTTTACTGAATCAGGCATGCTAAGCTTGGAAAGAGATATTGTGCTGCAACTAACGAAACTTGGAGCTTTGGAGTTTTTCAATACCTGTCTATCTAGGACGCTTAAAACTTCAAGTTTTCATGATTTGTCAGACTTGCCCCTTGAGGATGGTGGAGATCATAATCTAAACCAGAAAACTGACGACCACAAAGAAGATATCATAGTTTACTCTGGAAAAAGAGCAGGAAGAAGATCAGTAAAAAAGAGAGCACTGGATAATGCTGATAAAGTTGCTTCCCAGCCAATAGCTACAAGAGCTGCTAAAGAAAATTTTCGTAATTCGGCTATATTTTCAAGGAAAAGAGCGTCTAATTCTAGAAAAAGAAGACTGATAGTTGCACGAAATGAAGCCGAAATGTCCACAGGGGTTAAGGTTGATCCATCTTTGATGTTCACACAACCTTCTTTTCAATACTTGTTATGCTAAGCTTCTGTCTCATTGCAGGTAGTTGCAAACTTAGAAAGAATTAAAGAAACTTTAGAAAAGGAATCCGGAAGAATAGCAAGCATGAGTTGTTGGGCCGATGCTGCTGGGGTTGATATAAAGGACCTGCAGAAACAGTTACAATTTGGTTGGTTCTGCCAGGATGAGCTTTTAAGGAGCACTAATTCACTAGTTGTATTTCTTGCAAAGAAATATCGATGCTCTGGGTTACCAATGGAGGACTTGGTTCAGGTCTATTCAATACTATTCTATGAGAAACCTCAGTTCTTTGCATTTCAATTTACTTTTTTTTTTTCTTTTTTTTTTTAAATGTTTTTGTTTTTAACAGAGTATATGACATTTCTTCCTTTGTTTGATCCTCAATATAGCTTATCATTTACAAGTGCCAGTTTTGTCTGGTAGCGAAACCAAATTTCTGGCACCATCTAAATCTTTCTGCAGATGAAAAGCATATGATTGTTTTTTCAGCTTACCACCATAAATTGCATAAAAAATAAGACGAGGATTATGCTGGATGATTAAATATTTCATCAAATTGATGCTTAATAAGGAAATTGATGTCAACAGATAACTATGTACTCCGCTTTATTCTCAATAGAAGTACAATAGGGAAAATGCAAGAGGACATGCATCTTGATGTTTATTTTCTTGTATATTGGTAGGCAGGAGCCCTTGGTGTGCTGCAAGGTGTGGAAAGGTTTGACCCTAAAAGGGGTTTTAGATTCTCGACCTATATCCAATACTGGATAAGGAAATCAATGTCAAGAGTTGTGGCACGAAACTCGAGGGGAATTCAAATTCCAGTATGATCTTCTTTCACCAGGAGGCTATTTTCATAAAGTTTAATTTTCATGTATAACTGACTCATCTTTATATTTCTTTGTAGTGGTCATTAACCAAGGCAATAAATCAGATACAGAAAGCTCGAAAAACCTTGAACAATGGTGGTAGGAGATATTCGGATGACGATATAGCAAAGGCTACTGGTCTTCCTTTGGCCAAGGTTAGAGTTGCTAGCAACTGTTTAAAAGTTGTGGGTTCAGTTGATCAGAAGATGGGTGATGGACTAAATATGAAATATATGGTATGACTCTCCCTCTTTCTCTCTTAGCTCCCCATTTTCTTTGAACTTCAAGACATTTCTGGGGCATATTTTGTTTATTTTGGGGCGCACATTGACTTATGAAGAAAAATAAATAGAGAGCTATATCTTTGTTACTGAAGTTGGTTCGTCAAAAGTTTACATATCAGTTCAAAAGTGGCAAAGACCAACTGGTGGAGTTAAGCTAGTTTAAAATGAACACGTTTAGAATATCCCGGTCCTCTACTGTAGGGGAGAAAATCTTAAGAAAGATATGTGGCTTCCAGAGCACACGTTTAATGTTACATATTATATTTATAATACATATGAGAACTCTGATCTGATATGTTATGTTCTTTAAACGTCTTATGACACTTATGGTGCAGGAATTTACAGCAGATACGTCAATACAGAGCCCAGAAGAGACCGTGAAACGGAAACTAATGAAGAAAGACATTTTGAATCTTCTTGAAGGGTTGGAATCGAGGGAGAGGCAGGTCCTGGCACTACGATACGGACTTGTGGATTTTCAACCGAAGTCGCTCGAGGAAATTGGAAAACTTCTGCACGTAAGCAAGGAGTGGGTTCGAAAAATAGAGAAGAAAGCCATGACAAAGCTGAAAGACGAAGAGACTGTGAGGAACTTGAGCCATTATTTGGATTGATATACTTCTTTCAGCTTGAGAAACCTCAGTCTTTCCAAAATTTGCAGCAGGCCAAGGAAGCCAAGGTTGGCATCGCGCTTTCGGGCCATACTAACAAAGTTACTGTCACAAGAAAACGCAACGACAGGTGCAATGAGCATATCTCAATCCTCGACGATTCAAGTAACGAATTCTGTACAGTTCCATACATGATGCATTACACACCAGCCTCTATACTACTGAAACAGAAACATCAACCCTTCTGTTGCTGGTTCATGTTTTTTGATGTAAAATATGTTCTTTATTTCCATCAATGCATTGATGGGGCTGTAGGTAAAGATGTGCATCTGGGCATGGCCAAACCTTCCATATACATATACATATATACATACATATATAGCAATTTTAAGCCTATGGCTCCACATATATTACATTGTATTTCACATACAGGGCAATTCATGCCATTGTTGTAGAGGTGTATGTCTGGATGAGCAAGGCTGATTTATCAATACAAAATTTCTTTTAGCTTTTGTGTTCACATGTGAATTCAGTCCAAGTTCATGACTTTGCTTACATTTCTTTGCTGAGAAGAAACTTGAGGGATTATATAATACTTTTCTTCCTCGAGAAGAAATGGACAAACGAAACAGTTTGATGAATCTGTTTGGTTGGACAACTTTGGTAAAAGCAGGCTTTTTTTCAGGTCAGAATCGAATGCTATAATTTATTATTATCAACTGTTTTTTCTTGGGAAAGACTAACACCAATGTAGATTGGAGAGGTCAATTTGTATACCAAGCTGTACAAAATTGAAGAATATATATATATTTATTTATTGGAGTTCAACAACATTTGGGGTGAGAGTATTCGAACATTTTCCCTCTTGGTTGAGGGTACATGTCAATTACTGTTGAGTTGTGCTCGCTTTGGCAAAATGAATAAGAGTTAATCAATGAGTACGTCTCGAAATAACTTGCAAGTTTGAATTTTTTTTCTCTTTATTCGTGATGGATATGTCACGTCAATATTTAAGCAACTGTATCGAATATATGAACTTGTCAAACATGGTCCCAATTTGGTCGCTTTAATTTCAACTTGATGTTTGTGATTTTAAAATCTTCAACTTTTTTCTTTTGTAAGGTTTAAAATTTTCAACTTGGTTTTTATGATTTAACAACTTCATAAATCGTCCAAAGTTGTCTTGTATCCATTTGAAAACTCCACCTGTCTCCTTTTATCTTCCACCCTACCTTAAACTAACATACGACCAACTAAAATAAAATTTTGTTTAAAATACCATCTTGGTCATTATAATTTGAGATCTGTACATTTTTCAGTTTTTGTATTTTCAAACATTCAATTTCGGTTCATTTGCTTTTAATAAACCTTAAATTTAATCCTTAGGTTAACTCGTCCAAAAATAAATTAGTCTAGACTAGCATTTTCTTTATAAATTTAAAAAACATATCTATATCGTGTATTTTTCTTGAAAATACATGGACCAAAATTGGACATTTAAAAATACAGAAGAATATAATTGAATGAGCCTCAAAGTACATGAACTAAAATTGTATTTCAACATAGGAAAGGTAGAAATAGCCTCATAAGTCATAAGGACGAAGTAAAACTTGTAATATGATTAAATTAAAGCAGATAACTCAAACTATTGAAATTAAATTTAAACTTTTAATCCCATATGCACCTAGTTGAAGTTGAAGGTGGTTTTTTTTTTTTTTTTTTAAATATTTGTAGACAATTAAAATTTTAAAGACTCAACAAACTCCCCATCAACATCCATCCATGGAATTTCGAATTTAACCCAAAAATTTAAAAACCGAAAAAAAAGGAAAAAAAAAATTAATAAATATGGTCGAGTTGGTGGTAAGCTAGAAACAGTGTGTCTTTCCAAAAATTTCCCACGTCTACTCGCTTTCACTGCCTGCGCGACTCTGTCAATCAAACGACCACCACCAAATCCTTTCCGAAAGTGACCCGCTCGCCCTTCTTCTTCCCTCACAGCCCATTCACGCATCTCCTTTCCCTTGAAAAACAGTCAAACACCTCGACCACCCACCTCGCTGTCTCATCCTCACTGGCCCGTCACCAATCCACCTCCTCGCCCAACGCACCTTATCACAGCCCGTCCCAACATGAATCTCCCTCGCTCACGCCATTCCACCGCGCTTGACCAACACTCGAGGGTCCATTTCGGACAAAGAAACGACAGACGATTCCATTACACGGCGTCGTTTTAGCCCCGCGAGTGGCTTCCACTCTCTCAGGACAACGGTAGGGTTCATTATTATTTAATGATGAATGTGACAAAGTACCACGATTAACCTCCACACGTGCCAACTCCGGCGCGGGAAAACAACCAAAAGTCAAAGAGGAGAGTGGACTATGGGGTCCGACCAATGAGAGAAGGACACGTGGGCGAGCTCAGCGAACTCAAGCCGCTTTGAAATATTTCTCTGTCATTGAGTCGTCCCGGAAATAAGTAAAGGGGGGTTCTTTTTTCCCCCACCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCATTCGCTCTTCTCCAAAAAACCTCAATCTTACCTTCTCTGTCTGTTTCCGCTGCAGTCTCTTTGCAGAGCGATTTCTAGGGTTTTCAGTGGGAGTTTTAGGGCTTTTCTCCGATTTCTACAGACGACGCGCATGTACTCTGAATTTCGTGAACTTGTCTTCATGGTGGATTCAGTTTTGTCCTCAATCGCATTTGCTAATTCAGTTACCAATCCTTCTTATAATACCCTCTGA

mRNA sequence

TTTTTCTTTCTTTCTTTCTTTTTTCGTTCCAATTTTCTTTCTTTTCCAAATTCTTAAAAAGGGGATTAAGAATTGGTGGTAGAGAGTTTGCAGTTTCGACGTCCACATTTTGACTCATCAGATTGCATGAGTAATTACTACTTCACCACCAAGCTTCTGCCTCTTCCTGGCTTCGATTTTCACGATGGGAACAAGTTTCAGGCCAAATCTCAAGTGGGCTTTTCAATTTCAGACTCATTCTCGCAAGGGCTCCCCTTCCAAGCTTTCTCCATATGCCTCTAAAGGCAGGGAAGCTTCTTTCAATTCAGCAAGGCTTTCATTCTTCTCTGCTATTTGTGAGGAAGGAGAATCTATCTCTAGAGAAACCTTGAAAACATACACTTGCTTGTCTGAAGCTCCCCAAACCTCAGCTGATGATTTGTTAGATTTGGAAGAGATAGAGGTTAGCCCTTTGCAATAAACTTCACACAATACCCACGTATAGTCTTGACCTCCCTTAGTTTCTTGCTCTTGGTGGTACGGTGATGGGTGTTGAATCCAACAATTAATAGTTTCTACTTGAAAATAATTTTAGATTGTAGTAGTAGCAAGTAGAGTCAAATCTACATGGATTGGTTTGATTTATTTATTGAAAATTAAAAATATAAAATGTAAAATAGGGGTGTTTTGGAATTAATGCTGTAAAACAAAAAGAGATGAGTCAATATGGATAAGAATCAAACTAAATATATAGTTTCAACAGTAGATTCTGCATCTTATCTATGTTATTGTGGGTCTAATTCATCTTATATTTCAGATAAACAGTAGGACAAAGTCACTCAATCATTTGCATTACGGGATAAAAAATACCGGGCGATCCAAGGTAGACGACAATTTTTCTTCCTGTACAAGCTTGCCTACTGGCAAGGCGTCACCTTTTGGAATGTTAATGGAAAACCTTGATGTTTTGGAGGGAACTTTTACTGAATCAGGCATGCTAAGCTTGGAAAGAGATATTGTGCTGCAACTAACGAAACTTGGAGCTTTGGAGTTTTTCAATACCTGTCTATCTAGGACGCTTAAAACTTCAAGTTTTCATGATTTGTCAGACTTGCCCCTTGAGGATGGTGGAGATCATAATCTAAACCAGAAAACTGACGACCACAAAGAAGATATCATAGTTTACTCTGGAAAAAGAGCAGGAAGAAGATCAGTAAAAAAGAGAGCACTGGATAATGCTGATAAAGTTGCTTCCCAGCCAATAGCTACAAGAGCTGCTAAAGAAAATTTTCGTAATTCGGCTATATTTTCAAGGAAAAGAGCGTCTAATTCTAGAAAAAGAAGACTGATAGTTGCACGAAATGAAGCCGAAATGTCCACAGGGGTTAAGGTAGTTGCAAACTTAGAAAGAATTAAAGAAACTTTAGAAAAGGAATCCGGAAGAATAGCAAGCATGAGTTGTTGGGCCGATGCTGCTGGGGTTGATATAAAGGACCTGCAGAAACAGTTACAATTTGGTTGGTTCTGCCAGGATGAGCTTTTAAGGAGCACTAATTCACTAGTTGTATTTCTTGCAAAGAAATATCGATGCTCTGGGTTACCAATGGAGGACTTGGTTCAGGCAGGAGCCCTTGGTGTGCTGCAAGGTGTGGAAAGGTTTGACCCTAAAAGGGGTTTTAGATTCTCGACCTATATCCAATACTGGATAAGGAAATCAATGTCAAGAGTTGTGGCACGAAACTCGAGGGGAATTCAAATTCCATGGTCATTAACCAAGGCAATAAATCAGATACAGAAAGCTCGAAAAACCTTGAACAATGGTGGTAGGAGATATTCGGATGACGATATAGCAAAGGCTACTGGTCTTCCTTTGGCCAAGGTTAGAGTTGCTAGCAACTGTTTAAAAGTTGTGGGTTCAGTTGATCAGAAGATGGGTGATGGACTAAATATGAAATATATGGAATTTACAGCAGATACGTCAATACAGAGCCCAGAAGAGACCGTGAAACGGAAACTAATGAAGAAAGACATTTTGAATCTTCTTGAAGGGTTGGAATCGAGGGAGAGGCAGGTCCTGGCACTACGATACGGACTTGTGGATTTTCAACCGAAGTCGCTCGAGGAAATTGGAAAACTTCTGCACGTAAGCAAGGAGTGGGTTCGAAAAATAGAGAAGAAAGCCATGACAAAGCTGAAAGACGAAGAGACTCTTGAGAAACCTCAGTCTTTCCAAAATTTGCAGCAGGCCAAGGAAGCCAAGGTTGGCATCGCGCTTTCGGGCCATACTAACAAAGTTACTGTCACAAGAAAACGCAACGACAGGTGCAATGAGCATATCTCAATCCTCGACGATTCAAGTAACGAATTCTGTACAGTTCCATACATGATGCATTACACACCAGCCTCTATACTACTGAAACAGAAACATCAACCCTTCTGTTGCTGGTTCATGTTTTTTGATGTAAAATATGTTCTTTATTTCCATCAATGCATTGATGGGGCTTCTCTTTGCAGAGCGATTTCTAGGGTTTTCAGTGGGAGTTTTAGGGCTTTTCTCCGATTTCTACAGACGACGCGCATGTACTCTGAATTTCGTGAACTTGTCTTCATGGTGGATTCAGTTTTGTCCTCAATCGCATTTGCTAATTCAGTTACCAATCCTTCTTATAATACCCTCTGA

Coding sequence (CDS)

ATGTTAATGGAAAACCTTGATGTTTTGGAGGGAACTTTTACTGAATCAGGCATGCTAAGCTTGGAAAGAGATATTGTGCTGCAACTAACGAAACTTGGAGCTTTGGAGTTTTTCAATACCTGTCTATCTAGGACGCTTAAAACTTCAAGTTTTCATGATTTGTCAGACTTGCCCCTTGAGGATGGTGGAGATCATAATCTAAACCAGAAAACTGACGACCACAAAGAAGATATCATAGTTTACTCTGGAAAAAGAGCAGGAAGAAGATCAGTAAAAAAGAGAGCACTGGATAATGCTGATAAAGTTGCTTCCCAGCCAATAGCTACAAGAGCTGCTAAAGAAAATTTTCGTAATTCGGCTATATTTTCAAGGAAAAGAGCGTCTAATTCTAGAAAAAGAAGACTGATAGTTGCACGAAATGAAGCCGAAATGTCCACAGGGGTTAAGGTAGTTGCAAACTTAGAAAGAATTAAAGAAACTTTAGAAAAGGAATCCGGAAGAATAGCAAGCATGAGTTGTTGGGCCGATGCTGCTGGGGTTGATATAAAGGACCTGCAGAAACAGTTACAATTTGGTTGGTTCTGCCAGGATGAGCTTTTAAGGAGCACTAATTCACTAGTTGTATTTCTTGCAAAGAAATATCGATGCTCTGGGTTACCAATGGAGGACTTGGTTCAGGCAGGAGCCCTTGGTGTGCTGCAAGGTGTGGAAAGGTTTGACCCTAAAAGGGGTTTTAGATTCTCGACCTATATCCAATACTGGATAAGGAAATCAATGTCAAGAGTTGTGGCACGAAACTCGAGGGGAATTCAAATTCCATGGTCATTAACCAAGGCAATAAATCAGATACAGAAAGCTCGAAAAACCTTGAACAATGGTGGTAGGAGATATTCGGATGACGATATAGCAAAGGCTACTGGTCTTCCTTTGGCCAAGGTTAGAGTTGCTAGCAACTGTTTAAAAGTTGTGGGTTCAGTTGATCAGAAGATGGGTGATGGACTAAATATGAAATATATGGAATTTACAGCAGATACGTCAATACAGAGCCCAGAAGAGACCGTGAAACGGAAACTAATGAAGAAAGACATTTTGAATCTTCTTGAAGGGTTGGAATCGAGGGAGAGGCAGGTCCTGGCACTACGATACGGACTTGTGGATTTTCAACCGAAGTCGCTCGAGGAAATTGGAAAACTTCTGCACGTAAGCAAGGAGTGGGTTCGAAAAATAGAGAAGAAAGCCATGACAAAGCTGAAAGACGAAGAGACTCTTGAGAAACCTCAGTCTTTCCAAAATTTGCAGCAGGCCAAGGAAGCCAAGGTTGGCATCGCGCTTTCGGGCCATACTAACAAAGTTACTGTCACAAGAAAACGCAACGACAGGTGCAATGAGCATATCTCAATCCTCGACGATTCAAGTAACGAATTCTGTACAGTTCCATACATGATGCATTACACACCAGCCTCTATACTACTGAAACAGAAACATCAACCCTTCTGTTGCTGGTTCATGTTTTTTGATGTAAAATATGTTCTTTATTTCCATCAATGCATTGATGGGGCTTCTCTTTGCAGAGCGATTTCTAGGGTTTTCAGTGGGAGTTTTAGGGCTTTTCTCCGATTTCTACAGACGACGCGCATGTACTCTGAATTTCGTGAACTTGTCTTCATGGTGGATTCAGTTTTGTCCTCAATCGCATTTGCTAATTCAGTTACCAATCCTTCTTATAATACCCTCTGA

Protein sequence

MLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPLEDGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKENFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETLEKPQSFQNLQQAKEAKVGIALSGHTNKVTVTRKRNDRCNEHISILDDSSNEFCTVPYMMHYTPASILLKQKHQPFCCWFMFFDVKYVLYFHQCIDGASLCRAISRVFSGSFRAFLRFLQTTRMYSEFRELVFMVDSVLSSIAFANSVTNPSYNTL

Homology

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BLAST of Lcy01g011860 vs. ExPASy Swiss-Prot
Match: O24621 (RNA polymerase sigma factor sigC OS=Arabidopsis thaliana OX=3702 GN=SIGC PE=2 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 5.7e-109
Identity = 216/435 (49.66%), Postives = 303/435 (69.66%), Query Frame = 0


Query: 1   MLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPLE 60
           +L +NL  LE TF     + +ERDI+LQ+ KLGA E F TCLSR   +S    LSD    
Sbjct: 150 LLAKNLLALEETFVALDSVRMERDIMLQMGKLGAAELFKTCLSRYRGSSITSCLSD---- 209

Query: 61  DGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRAL--DNADKVASQPIATRAAKENFRN 120
                   +  D      +  S +R  ++  ++ ++  +N D+ +S PI  R    N   
Sbjct: 210 ------TTELVDTTPNQQVFVSSRRKVKKKARRSSVTAENGDQ-SSLPIGLRTTWNNIDV 269

Query: 121 SAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAA 180
             +   +R    RK+R  ++RNE EMSTGVK+VA++ERI+  LE+ESG++AS+SCWA AA
Sbjct: 270 PRV---RRPPKYRKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAA 329

Query: 181 GVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVER 240
           G++ K L + L +GW+C+DEL++ST SLV+FLA+ YR  G+  EDL+QAG +GVLQG ER
Sbjct: 330 GMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAER 389

Query: 241 FDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTL--NNGGRR 300
           FD  RG++FSTY+QYWIRKSMS +V+R++RG+ IP S+ + IN IQKARKTL  ++G + 
Sbjct: 390 FDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKY 449

Query: 301 YSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKR 360
            +D++IAK TG  + K+R A+ CLKVVGS+D+K+GD    K++EFT DT+++SPEE V R
Sbjct: 450 AADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMR 509

Query: 361 KLMKKDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTK 420
           +  ++DI +LLEGLE RE+QV+ LRYGL D++PKSLEEIGKLL VSKEW+RKIE++AM K
Sbjct: 510 QSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAK 569

Query: 421 LKDEETLEKPQSFQN 432
           L+D+   E  + + N
Sbjct: 570 LRDQPNAEDLRYYLN 570

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BLAST of Lcy01g011860 vs. ExPASy Swiss-Prot
Match: O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 204.9 bits (520), Expect = 2.4e-51
Identity = 124/385 (32.21%), Postives = 230/385 (59.74%), Query Frame = 0


Query: 45  TLKTSSFHDLSDLPLEDGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRALDN------ 104
           T   S+   + DL  E   +  L +  +     + V S ++  R++ + + L+       
Sbjct: 179 TASASNKESIGDLESEKQEEVELLE--EQPSVSLAVRSTRQTERKARRAKGLEKTASGIP 238

Query: 105 ADKVASQPIATR-AAKENFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERI 164
           + K  S P   R  A+E   N  +   +  ++S K  L+  R E E+S G++ +  LER+
Sbjct: 239 SVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSK--LLTVREEHELSAGIQDLLKLERL 298

Query: 165 KETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCS 224
           +  L + SGR  + + WA AAGVD K L++++  G  C+D++++S   LV+ +AK Y+ +
Sbjct: 299 QTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGA 358

Query: 225 GLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLT 284
           G+ ++DLVQ G  G+++G E+FD  +GF+FSTY  +WI++++ + ++  SR I++P+ + 
Sbjct: 359 GMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMV 418

Query: 285 KAINQIQKARKTL-NNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNM 344
           +A  ++++ARK L +  G+   +++IA+ATGL + ++       K   S+DQK+G   N+
Sbjct: 419 EATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNL 478

Query: 345 KYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIG 404
           K  E  AD    + E+ + ++ M++D+  +L+ L +RE+QV+  R+G+ D + K+L+EIG
Sbjct: 479 KPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIG 538

Query: 405 KLLHVSKEWVRKIEKKAMTKLKDEE 422
           +++ VS+E VR+IE  A  KLK+++
Sbjct: 539 EMMGVSRERVRQIESSAFRKLKNKK 559

[Close]

BLAST of Lcy01g011860 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.4e-43
Identity = 105/319 (32.92%), Postives = 196/319 (61.44%), Query Frame = 0


Query: 101 KVASQPIATRAAKENFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKET 160
           K A     T++ K+++   +I  R       + RL+ A  E E++  +  +  LER++E 
Sbjct: 62  KAAKSRRRTQSKKKHYTEDSI--RLYLQEIGRIRLLRADEEIELARKIADLLELERVRER 121

Query: 161 LEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLP 220
           L ++  R    S WA+A  + +   + +L  G   +D++++S   LVV +AKKY   GL 
Sbjct: 122 LSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLS 181

Query: 221 MEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAI 280
            +DL+Q G+LG+++  E+FD ++G++FSTY  +WIR++++R +A  SR I++P  L + I
Sbjct: 182 FQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETI 241

Query: 281 NQIQKARKTLNNG-GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYM 340
           ++I+K  K L+   GR+ ++++IA    + + K+R  +   ++  S++  +G   + +  
Sbjct: 242 SRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLG 301

Query: 341 EFTADTSIQSPEETVKRKLMKKDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIGKLL 400
           +F  ++  ++PE+ V + L+++D+  +L+ L  RER VL LRYGL D + K+LEEIG++ 
Sbjct: 302 DF-IESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIF 361

Query: 401 HVSKEWVRKIEKKAMTKLK 419
           +V++E +R+IE KA+ KL+
Sbjct: 362 NVTRERIRQIEAKALRKLR 377

[Close]

BLAST of Lcy01g011860 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 178.3 bits (451), Expect = 2.4e-43
Identity = 109/327 (33.33%), Postives = 196/327 (59.94%), Query Frame = 0


Query: 95  ALDNADKVASQPIATRAAKENFRNSAIFS--RKRASNSRKRRLIVARNEAEMSTGVKVVA 154
           A+D+ D V     A   AK   R +      R       + RL+ A  E E++  +  + 
Sbjct: 61  AIDDEDSVGEDEDAAAKAKAKVRKTYTEDSIRLYLQEIGRIRLLRADEEIELARQIADLL 120

Query: 155 NLERIKETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAK 214
            LERI++ L ++  R+ S + WA A    + + +++L  G   +D++++S   LVV +AK
Sbjct: 121 ALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAK 180

Query: 215 KYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQI 274
           KY   GL  +DL+Q G+LG+++  E+FD ++G++FSTY  +WIR++++R +A  SR I++
Sbjct: 181 KYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRL 240

Query: 275 PWSLTKAINQIQKARKTLNNG-GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMG 334
           P  L + I++I+K  K L+   GR+ ++++IA    + + K+R  +   ++  S++  +G
Sbjct: 241 PVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIG 300

Query: 335 DGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLESRERQVLALRYGLVDFQPKS 394
              + +  +F  +   ++PE+ V + L+++D+  +L  L  RER VL LRYGL D + K+
Sbjct: 301 KEEDSRLGDF-IEADGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKT 360

Query: 395 LEEIGKLLHVSKEWVRKIEKKAMTKLK 419
           LEEIG+L +V++E +R+IE KA+ KL+
Sbjct: 361 LEEIGQLFNVTRERIRQIEAKALRKLR 386

[Close]

BLAST of Lcy01g011860 vs. ExPASy Swiss-Prot
Match: Q9LD95 (RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGF PE=1 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 5.1e-41
Identity = 100/332 (30.12%), Postives = 193/332 (58.13%), Query Frame = 0


Query: 88  RRSVKKRALDNADKVASQPIATRAAKENFRNSAIFSRKRASNSRKRRLIVARNEAEMSTG 147
           RR+ K   +D+   V  +  A +  K+   N     +        ++L+ A+ EAE+ + 
Sbjct: 201 RRAPKSNDVDDEGYVPQKTSAKKKYKQGADNDDAL-QLFLWGPETKQLLTAKEEAELISH 260

Query: 148 VKVVANLERIKETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLV 207
           ++ +  LE++K  LE ++G   ++  WA+A G+    L+  +  G   +++L+ +   LV
Sbjct: 261 IQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLV 320

Query: 208 VFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNS 267
           V +AK+Y+  GL  +DL+Q G++G+++ VE+F P+ G RF+TY  +WIR+S+ + + +NS
Sbjct: 321 VHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNS 380

Query: 268 RGIQIPWSLTKAINQIQKARKT-LNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSV 327
           R I++P ++   + ++ +ARKT +  G  R S +++A   G+   K+       +   S+
Sbjct: 381 RTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSM 440

Query: 328 DQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLESRERQVLALRYGLVD 387
            Q +    +  + E T D+ I++P  +V ++LM+  + NLL  L  +ER+++ LR+G+  
Sbjct: 441 QQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDG 500

Query: 388 FQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLK 419
            + +SL EIG++  +SKE VR++E +A+ +LK
Sbjct: 501 GKQRSLSEIGEIYGLSKERVRQLESRALYRLK 531

[Close]

BLAST of Lcy01g011860 vs. ExPASy TrEMBL
Match: A0A1S3BBM8 (RNA polymerase sigma factor sigC OS=Cucumis melo OX=3656 GN=LOC103488161 PE=3 SV=1)

HSP 1 Score: 748.0 bits (1930), Expect = 2.9e-212
Identity = 382/424 (90.09%), Postives = 406/424 (95.75%), Query Frame = 0


Query: 1   MLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPLE 60
           +LMENLDVLE TF ESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLP+E
Sbjct: 130 ILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPVE 189

Query: 61  DGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKENFRNSA 120
           DG DHN+NQKT+D   D+ VYSGKRAGRRSVKKRA+DNADKVAS+P+ATRA KE   +S 
Sbjct: 190 DGEDHNVNQKTNDQNCDVTVYSGKRAGRRSVKKRAMDNADKVASRPLATRAVKEKIHSST 249

Query: 121 IFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAAGV 180
           IFSRK++SNS KRRL+VARNEAEMSTG+KVVANLERI+ETLEKESGRIASMSCWA+AA V
Sbjct: 250 IFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASMSCWAEAASV 309

Query: 181 DIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFD 240
           DIKDLQKQLQFGWFC+DELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGALGVLQGVERFD
Sbjct: 310 DIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFD 369

Query: 241 PKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNNGGRRYSDD 300
           PKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARK LN GGRRYSDD
Sbjct: 370 PKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLNQGGRRYSDD 429

Query: 301 DIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMK 360
           DIA+ATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMK
Sbjct: 430 DIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMK 489

Query: 361 KDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDE 420
           KDI N+L+GLESRERQVL LRYGL+DFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLK+E
Sbjct: 490 KDIFNILQGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNE 549

Query: 421 ETLE 425
           ET++
Sbjct: 550 ETVK 553

[Close]

BLAST of Lcy01g011860 vs. ExPASy TrEMBL
Match: A0A5A7VCX9 (RNA polymerase sigma factor sigC OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G003890 PE=3 SV=1)

HSP 1 Score: 746.5 bits (1926), Expect = 8.3e-212
Identity = 381/424 (89.86%), Postives = 406/424 (95.75%), Query Frame = 0


Query: 1   MLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPLE 60
           +LMENLDVLE TF ESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLP+E
Sbjct: 108 ILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPVE 167

Query: 61  DGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKENFRNSA 120
           DG DHN+NQKT+D   D+ VYSGKRAGRRSVKKRA+DNADKVAS+P+ATRA KE   +S 
Sbjct: 168 DGEDHNVNQKTNDQNCDVTVYSGKRAGRRSVKKRAMDNADKVASRPLATRAVKEKIHSST 227

Query: 121 IFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAAGV 180
           IFSRK++SNS KRRL+VARNEAEMSTG+KVVANLERI+ETLEKESGRIASMSCWA+AA V
Sbjct: 228 IFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASMSCWAEAASV 287

Query: 181 DIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFD 240
           DIKDLQKQLQFGWFC+DELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGALGVLQGVERFD
Sbjct: 288 DIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFD 347

Query: 241 PKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNNGGRRYSDD 300
           PKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARK LN GGRRYSDD
Sbjct: 348 PKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLNQGGRRYSDD 407

Query: 301 DIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMK 360
           DIA+ATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKR+LMK
Sbjct: 408 DIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMK 467

Query: 361 KDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDE 420
           KDI N+L+GLESRERQVL LRYGL+DFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLK+E
Sbjct: 468 KDIFNILQGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNE 527

Query: 421 ETLE 425
           ET++
Sbjct: 528 ETVK 531

[Close]

BLAST of Lcy01g011860 vs. ExPASy TrEMBL
Match: A0A6J1BRC1 (RNA polymerase sigma factor sigC isoform X1 OS=Momordica charantia OX=3673 GN=LOC111004887 PE=3 SV=1)

HSP 1 Score: 726.9 bits (1875), Expect = 6.8e-206
Identity = 379/424 (89.39%), Postives = 396/424 (93.40%), Query Frame = 0


Query: 1   MLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK--TSSFHDLSDLP 60
           MLMENLDVLE  FTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK  TSSF DLSDLP
Sbjct: 129 MLMENLDVLEEAFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSTSSFLDLSDLP 188

Query: 61  LEDGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKENFRN 120
           +EDGG HN+NQKTD   +DIIVYSGK+ GRRS+K+RA D ADKVASQP AT AAKE F N
Sbjct: 189 IEDGGGHNVNQKTDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPATGAAKEKFHN 248

Query: 121 SAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAA 180
           SA F RKR  NSR+RRL+VARNEAEMSTGVKVVANLERI+ETLEKES + ASMSCWADAA
Sbjct: 249 SARFPRKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRASMSCWADAA 308

Query: 181 GVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVER 240
           G+DIKDL KQLQFGWFCQ+ELLRSTNSLV+FLAKKYRC+GLPMEDLVQAGA+GVLQGVER
Sbjct: 309 GIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVER 368

Query: 241 FDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNNGGRRYS 300
           FDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARK LNNG RRYS
Sbjct: 369 FDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKALNNGSRRYS 428

Query: 301 DDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKL 360
           DDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVK+KL
Sbjct: 429 DDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKL 488

Query: 361 MKKDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLK 420
           MKKDI NLLEGLE RERQVLALRYGL DFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLK
Sbjct: 489 MKKDIFNLLEGLEPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLK 548

Query: 421 DEET 423
           +EET
Sbjct: 549 NEET 552

[Close]

BLAST of Lcy01g011860 vs. ExPASy TrEMBL
Match: A0A6J1KA34 (RNA polymerase sigma factor sigC-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492024 PE=3 SV=1)

HSP 1 Score: 718.4 bits (1853), Expect = 2.4e-203
Identity = 373/424 (87.97%), Postives = 399/424 (94.10%), Query Frame = 0


Query: 1   MLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPL 60
           MLMENLDVLE TFTESGMLSLERDIVLQLTKLGALEFFN CLSRTLK +SSF DLSDLP+
Sbjct: 129 MLMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNACLSRTLKASSSFRDLSDLPI 188

Query: 61  EDGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKENFRNS 120
           E GGDHN+NQKTDD   +IIVYSGKRAGRRSVK+RA+DNADKVAS+P+ATRAAKE FR+ 
Sbjct: 189 EVGGDHNVNQKTDDQNHNIIVYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRS- 248

Query: 121 AIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAAG 180
              SRK+ASNS+KRR IVARNEAEMSTGVKVVANLERI+ETLEKESGR ASMSCWADA+ 
Sbjct: 249 ---SRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSCWADASS 308

Query: 181 VDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERF 240
           +DIKDLQKQLQFGWFCQDELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGA+GVLQGVERF
Sbjct: 309 IDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERF 368

Query: 241 DPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNNGGRRYSD 300
           DPKRGFRFSTYIQYWIRKSMSRVVAR+SRGIQIPWSLTKAINQIQKARK LNN GRRYSD
Sbjct: 369 DPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNSGRRYSD 428

Query: 301 DDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLM 360
           DD+AKATGLPLAKVRVASNCLKVVGSVDQK+GDGLNMKYME TADTSI+SPE+TVKR+LM
Sbjct: 429 DDVAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLM 488

Query: 361 KKDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKD 420
           KKDI NLLE LESRERQVL LRYGL+D QPKSLEEIGKLL VSKEWVRKIE+KA TKLK+
Sbjct: 489 KKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLRVSKEWVRKIERKATTKLKN 548

Query: 421 EETL 424
           EET+
Sbjct: 549 EETV 548

[Close]

BLAST of Lcy01g011860 vs. ExPASy TrEMBL
Match: A0A6J1KCF5 (RNA polymerase sigma factor sigC-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492024 PE=3 SV=1)

HSP 1 Score: 718.4 bits (1853), Expect = 2.4e-203
Identity = 373/424 (87.97%), Postives = 399/424 (94.10%), Query Frame = 0


Query: 1   MLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPL 60
           MLMENLDVLE TFTESGMLSLERDIVLQLTKLGALEFFN CLSRTLK +SSF DLSDLP+
Sbjct: 131 MLMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNACLSRTLKASSSFRDLSDLPI 190

Query: 61  EDGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKENFRNS 120
           E GGDHN+NQKTDD   +IIVYSGKRAGRRSVK+RA+DNADKVAS+P+ATRAAKE FR+ 
Sbjct: 191 EVGGDHNVNQKTDDQNHNIIVYSGKRAGRRSVKRRAMDNADKVASRPLATRAAKEKFRS- 250

Query: 121 AIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAAG 180
              SRK+ASNS+KRR IVARNEAEMSTGVKVVANLERI+ETLEKESGR ASMSCWADA+ 
Sbjct: 251 ---SRKKASNSKKRRSIVARNEAEMSTGVKVVANLERIRETLEKESGRTASMSCWADASS 310

Query: 181 VDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERF 240
           +DIKDLQKQLQFGWFCQDELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGA+GVLQGVERF
Sbjct: 311 IDIKDLQKQLQFGWFCQDELLRSTNSLVIFLAKKYRCSGLPMEDLVQAGAIGVLQGVERF 370

Query: 241 DPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNNGGRRYSD 300
           DPKRGFRFSTYIQYWIRKSMSRVVAR+SRGIQIPWSLTKAINQIQKARK LNN GRRYSD
Sbjct: 371 DPKRGFRFSTYIQYWIRKSMSRVVARSSRGIQIPWSLTKAINQIQKARKALNNSGRRYSD 430

Query: 301 DDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLM 360
           DD+AKATGLPLAKVRVASNCLKVVGSVDQK+GDGLNMKYME TADTSI+SPE+TVKR+LM
Sbjct: 431 DDVAKATGLPLAKVRVASNCLKVVGSVDQKIGDGLNMKYMELTADTSIESPEDTVKRRLM 490

Query: 361 KKDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKD 420
           KKDI NLLE LESRERQVL LRYGL+D QPKSLEEIGKLL VSKEWVRKIE+KA TKLK+
Sbjct: 491 KKDIFNLLEVLESRERQVLVLRYGLMDSQPKSLEEIGKLLRVSKEWVRKIERKATTKLKN 550

Query: 421 EETL 424
           EET+
Sbjct: 551 EETV 550

[Close]

BLAST of Lcy01g011860 vs. NCBI nr
Match: XP_008444981.1 (PREDICTED: RNA polymerase sigma factor sigC [Cucumis melo])

HSP 1 Score: 748.0 bits (1930), Expect = 5.9e-212
Identity = 382/424 (90.09%), Postives = 406/424 (95.75%), Query Frame = 0


Query: 1   MLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPLE 60
           +LMENLDVLE TF ESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLP+E
Sbjct: 130 ILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPVE 189

Query: 61  DGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKENFRNSA 120
           DG DHN+NQKT+D   D+ VYSGKRAGRRSVKKRA+DNADKVAS+P+ATRA KE   +S 
Sbjct: 190 DGEDHNVNQKTNDQNCDVTVYSGKRAGRRSVKKRAMDNADKVASRPLATRAVKEKIHSST 249

Query: 121 IFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAAGV 180
           IFSRK++SNS KRRL+VARNEAEMSTG+KVVANLERI+ETLEKESGRIASMSCWA+AA V
Sbjct: 250 IFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASMSCWAEAASV 309

Query: 181 DIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFD 240
           DIKDLQKQLQFGWFC+DELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGALGVLQGVERFD
Sbjct: 310 DIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFD 369

Query: 241 PKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNNGGRRYSDD 300
           PKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARK LN GGRRYSDD
Sbjct: 370 PKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLNQGGRRYSDD 429

Query: 301 DIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMK 360
           DIA+ATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMK
Sbjct: 430 DIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMK 489

Query: 361 KDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDE 420
           KDI N+L+GLESRERQVL LRYGL+DFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLK+E
Sbjct: 490 KDIFNILQGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNE 549

Query: 421 ETLE 425
           ET++
Sbjct: 550 ETVK 553

[Close]

BLAST of Lcy01g011860 vs. NCBI nr
Match: KAA0065060.1 (RNA polymerase sigma factor sigC [Cucumis melo var. makuwa])

HSP 1 Score: 746.5 bits (1926), Expect = 1.7e-211
Identity = 381/424 (89.86%), Postives = 406/424 (95.75%), Query Frame = 0


Query: 1   MLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPLE 60
           +LMENLDVLE TF ESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLP+E
Sbjct: 108 ILMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPVE 167

Query: 61  DGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKENFRNSA 120
           DG DHN+NQKT+D   D+ VYSGKRAGRRSVKKRA+DNADKVAS+P+ATRA KE   +S 
Sbjct: 168 DGEDHNVNQKTNDQNCDVTVYSGKRAGRRSVKKRAMDNADKVASRPLATRAVKEKIHSST 227

Query: 121 IFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAAGV 180
           IFSRK++SNS KRRL+VARNEAEMSTG+KVVANLERI+ETLEKESGRIASMSCWA+AA V
Sbjct: 228 IFSRKKSSNSSKRRLVVARNEAEMSTGIKVVANLERIRETLEKESGRIASMSCWAEAASV 287

Query: 181 DIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFD 240
           DIKDLQKQLQFGWFC+DELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGALGVLQGVERFD
Sbjct: 288 DIKDLQKQLQFGWFCRDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVERFD 347

Query: 241 PKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNNGGRRYSDD 300
           PKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARK LN GGRRYSDD
Sbjct: 348 PKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKVLNQGGRRYSDD 407

Query: 301 DIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMK 360
           DIA+ATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKR+LMK
Sbjct: 408 DIARATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRELMK 467

Query: 361 KDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDE 420
           KDI N+L+GLESRERQVL LRYGL+DFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLK+E
Sbjct: 468 KDIFNILQGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNE 527

Query: 421 ETLE 425
           ET++
Sbjct: 528 ETVK 531

[Close]

BLAST of Lcy01g011860 vs. NCBI nr
Match: XP_038884658.1 (RNA polymerase sigma factor sigC isoform X1 [Benincasa hispida])

HSP 1 Score: 744.2 bits (1920), Expect = 8.5e-211
Identity = 384/427 (89.93%), Postives = 406/427 (95.08%), Query Frame = 0


Query: 1   MLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPL- 60
           MLMENLDVLE TFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLP+ 
Sbjct: 130 MLMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIE 189

Query: 61  ---EDGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKENF 120
              ED GDHN+NQKT D  +DIIVYSGKRA RRSVKKRA+D+ADKV SQP+ATRAAKE  
Sbjct: 190 QPTEDDGDHNVNQKTTDENDDIIVYSGKRAVRRSVKKRAMDSADKVYSQPLATRAAKEKI 249

Query: 121 RNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWAD 180
            +SAI SRK+ASNSRKRRLI+ARNEAEMSTGVKVVANLERI+ETLEKESGR+ SMSCWA+
Sbjct: 250 HSSAIISRKKASNSRKRRLIIARNEAEMSTGVKVVANLERIRETLEKESGRMVSMSCWAN 309

Query: 181 AAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGV 240
           AAGVDIKDL+KQLQFGWFCQDELLRSTNSL++FLA+KYRCSGLPMEDLVQAG+LGVLQGV
Sbjct: 310 AAGVDIKDLKKQLQFGWFCQDELLRSTNSLILFLARKYRCSGLPMEDLVQAGSLGVLQGV 369

Query: 241 ERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNNGGRR 300
           ERFDPKRGFRFSTYIQYWIRKSMSRVVARN+RGIQIPWSLTKAINQIQKARK LNNGGRR
Sbjct: 370 ERFDPKRGFRFSTYIQYWIRKSMSRVVARNARGIQIPWSLTKAINQIQKARKVLNNGGRR 429

Query: 301 YSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKR 360
           YSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTAD SIQSPEETVK+
Sbjct: 430 YSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADMSIQSPEETVKQ 489

Query: 361 KLMKKDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTK 420
           KLMKKDI N+LEGLESRERQVL LRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTK
Sbjct: 490 KLMKKDIFNVLEGLESRERQVLVLRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTK 549

Query: 421 LKDEETL 424
           L+ EET+
Sbjct: 550 LRSEETV 556

[Close]

BLAST of Lcy01g011860 vs. NCBI nr
Match: XP_038884659.1 (RNA polymerase sigma factor sigC isoform X2 [Benincasa hispida])

HSP 1 Score: 744.2 bits (1920), Expect = 8.5e-211
Identity = 384/427 (89.93%), Postives = 406/427 (95.08%), Query Frame = 0


Query: 1   MLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPL- 60
           MLMENLDVLE TFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLP+ 
Sbjct: 43  MLMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIE 102

Query: 61  ---EDGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKENF 120
              ED GDHN+NQKT D  +DIIVYSGKRA RRSVKKRA+D+ADKV SQP+ATRAAKE  
Sbjct: 103 QPTEDDGDHNVNQKTTDENDDIIVYSGKRAVRRSVKKRAMDSADKVYSQPLATRAAKEKI 162

Query: 121 RNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWAD 180
            +SAI SRK+ASNSRKRRLI+ARNEAEMSTGVKVVANLERI+ETLEKESGR+ SMSCWA+
Sbjct: 163 HSSAIISRKKASNSRKRRLIIARNEAEMSTGVKVVANLERIRETLEKESGRMVSMSCWAN 222

Query: 181 AAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGV 240
           AAGVDIKDL+KQLQFGWFCQDELLRSTNSL++FLA+KYRCSGLPMEDLVQAG+LGVLQGV
Sbjct: 223 AAGVDIKDLKKQLQFGWFCQDELLRSTNSLILFLARKYRCSGLPMEDLVQAGSLGVLQGV 282

Query: 241 ERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNNGGRR 300
           ERFDPKRGFRFSTYIQYWIRKSMSRVVARN+RGIQIPWSLTKAINQIQKARK LNNGGRR
Sbjct: 283 ERFDPKRGFRFSTYIQYWIRKSMSRVVARNARGIQIPWSLTKAINQIQKARKVLNNGGRR 342

Query: 301 YSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKR 360
           YSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTAD SIQSPEETVK+
Sbjct: 343 YSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADMSIQSPEETVKQ 402

Query: 361 KLMKKDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTK 420
           KLMKKDI N+LEGLESRERQVL LRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTK
Sbjct: 403 KLMKKDIFNVLEGLESRERQVLVLRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTK 462

Query: 421 LKDEETL 424
           L+ EET+
Sbjct: 463 LRSEETV 469

[Close]

BLAST of Lcy01g011860 vs. NCBI nr
Match: XP_022131819.1 (RNA polymerase sigma factor sigC isoform X1 [Momordica charantia])

HSP 1 Score: 726.9 bits (1875), Expect = 1.4e-205
Identity = 379/424 (89.39%), Postives = 396/424 (93.40%), Query Frame = 0


Query: 1   MLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK--TSSFHDLSDLP 60
           MLMENLDVLE  FTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK  TSSF DLSDLP
Sbjct: 129 MLMENLDVLEEAFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSTSSFLDLSDLP 188

Query: 61  LEDGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKENFRN 120
           +EDGG HN+NQKTD   +DIIVYSGK+ GRRS+K+RA D ADKVASQP AT AAKE F N
Sbjct: 189 IEDGGGHNVNQKTDRQNDDIIVYSGKKVGRRSIKERARDKADKVASQPPATGAAKEKFHN 248

Query: 121 SAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAA 180
           SA F RKR  NSR+RRL+VARNEAEMSTGVKVVANLERI+ETLEKES + ASMSCWADAA
Sbjct: 249 SARFPRKRVFNSRRRRLMVARNEAEMSTGVKVVANLERIRETLEKESEKRASMSCWADAA 308

Query: 181 GVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVER 240
           G+DIKDL KQLQFGWFCQ+ELLRSTNSLV+FLAKKYRC+GLPMEDLVQAGA+GVLQGVER
Sbjct: 309 GIDIKDLHKQLQFGWFCQNELLRSTNSLVLFLAKKYRCTGLPMEDLVQAGAIGVLQGVER 368

Query: 241 FDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNNGGRRYS 300
           FDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARK LNNG RRYS
Sbjct: 369 FDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKALNNGSRRYS 428

Query: 301 DDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKL 360
           DDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVK+KL
Sbjct: 429 DDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKL 488

Query: 361 MKKDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLK 420
           MKKDI NLLEGLE RERQVLALRYGL DFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLK
Sbjct: 489 MKKDIFNLLEGLEPRERQVLALRYGLQDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLK 548

Query: 421 DEET 423
           +EET
Sbjct: 549 NEET 552

[Close]

BLAST of Lcy01g011860 vs. TAIR 10
Match: AT3G53920.1 (RNApolymerase sigma-subunit C )

HSP 1 Score: 396.4 bits (1017), Expect = 4.1e-110
Identity = 216/435 (49.66%), Postives = 303/435 (69.66%), Query Frame = 0


Query: 1   MLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPLE 60
           +L +NL  LE TF     + +ERDI+LQ+ KLGA E F TCLSR   +S    LSD    
Sbjct: 150 LLAKNLLALEETFVALDSVRMERDIMLQMGKLGAAELFKTCLSRYRGSSITSCLSD---- 209

Query: 61  DGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRAL--DNADKVASQPIATRAAKENFRN 120
                   +  D      +  S +R  ++  ++ ++  +N D+ +S PI  R    N   
Sbjct: 210 ------TTELVDTTPNQQVFVSSRRKVKKKARRSSVTAENGDQ-SSLPIGLRTTWNNIDV 269

Query: 121 SAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAA 180
             +   +R    RK+R  ++RNE EMSTGVK+VA++ERI+  LE+ESG++AS+SCWA AA
Sbjct: 270 PRV---RRPPKYRKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAA 329

Query: 181 GVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVER 240
           G++ K L + L +GW+C+DEL++ST SLV+FLA+ YR  G+  EDL+QAG +GVLQG ER
Sbjct: 330 GMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAER 389

Query: 241 FDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTL--NNGGRR 300
           FD  RG++FSTY+QYWIRKSMS +V+R++RG+ IP S+ + IN IQKARKTL  ++G + 
Sbjct: 390 FDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKY 449

Query: 301 YSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKR 360
            +D++IAK TG  + K+R A+ CLKVVGS+D+K+GD    K++EFT DT+++SPEE V R
Sbjct: 450 AADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMR 509

Query: 361 KLMKKDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTK 420
           +  ++DI +LLEGLE RE+QV+ LRYGL D++PKSLEEIGKLL VSKEW+RKIE++AM K
Sbjct: 510 QSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAK 569

Query: 421 LKDEETLEKPQSFQN 432
           L+D+   E  + + N
Sbjct: 570 LRDQPNAEDLRYYLN 570

[Close]

BLAST of Lcy01g011860 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 204.9 bits (520), Expect = 1.7e-52
Identity = 124/385 (32.21%), Postives = 230/385 (59.74%), Query Frame = 0


Query: 45  TLKTSSFHDLSDLPLEDGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRALDN------ 104
           T   S+   + DL  E   +  L +  +     + V S ++  R++ + + L+       
Sbjct: 179 TASASNKESIGDLESEKQEEVELLE--EQPSVSLAVRSTRQTERKARRAKGLEKTASGIP 238

Query: 105 ADKVASQPIATR-AAKENFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERI 164
           + K  S P   R  A+E   N  +   +  ++S K  L+  R E E+S G++ +  LER+
Sbjct: 239 SVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSK--LLTVREEHELSAGIQDLLKLERL 298

Query: 165 KETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCS 224
           +  L + SGR  + + WA AAGVD K L++++  G  C+D++++S   LV+ +AK Y+ +
Sbjct: 299 QTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGA 358

Query: 225 GLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLT 284
           G+ ++DLVQ G  G+++G E+FD  +GF+FSTY  +WI++++ + ++  SR I++P+ + 
Sbjct: 359 GMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMV 418

Query: 285 KAINQIQKARKTL-NNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNM 344
           +A  ++++ARK L +  G+   +++IA+ATGL + ++       K   S+DQK+G   N+
Sbjct: 419 EATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNL 478

Query: 345 KYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIG 404
           K  E  AD    + E+ + ++ M++D+  +L+ L +RE+QV+  R+G+ D + K+L+EIG
Sbjct: 479 KPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIG 538

Query: 405 KLLHVSKEWVRKIEKKAMTKLKDEE 422
           +++ VS+E VR+IE  A  KLK+++
Sbjct: 539 EMMGVSRERVRQIESSAFRKLKNKK 559

[Close]

BLAST of Lcy01g011860 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 170.6 bits (431), Expect = 3.6e-42
Identity = 100/332 (30.12%), Postives = 193/332 (58.13%), Query Frame = 0


Query: 88  RRSVKKRALDNADKVASQPIATRAAKENFRNSAIFSRKRASNSRKRRLIVARNEAEMSTG 147
           RR+ K   +D+   V  +  A +  K+   N     +        ++L+ A+ EAE+ + 
Sbjct: 201 RRAPKSNDVDDEGYVPQKTSAKKKYKQGADNDDAL-QLFLWGPETKQLLTAKEEAELISH 260

Query: 148 VKVVANLERIKETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLV 207
           ++ +  LE++K  LE ++G   ++  WA+A G+    L+  +  G   +++L+ +   LV
Sbjct: 261 IQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLV 320

Query: 208 VFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNS 267
           V +AK+Y+  GL  +DL+Q G++G+++ VE+F P+ G RF+TY  +WIR+S+ + + +NS
Sbjct: 321 VHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNS 380

Query: 268 RGIQIPWSLTKAINQIQKARKT-LNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSV 327
           R I++P ++   + ++ +ARKT +  G  R S +++A   G+   K+       +   S+
Sbjct: 381 RTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSM 440

Query: 328 DQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLESRERQVLALRYGLVD 387
            Q +    +  + E T D+ I++P  +V ++LM+  + NLL  L  +ER+++ LR+G+  
Sbjct: 441 QQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDG 500

Query: 388 FQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLK 419
            + +SL EIG++  +SKE VR++E +A+ +LK
Sbjct: 501 GKQRSLSEIGEIYGLSKERVRQLESRALYRLK 531

[Close]

BLAST of Lcy01g011860 vs. TAIR 10
Match: AT5G13730.1 (sigma factor 4 )

HSP 1 Score: 142.1 bits (357), Expect = 1.4e-33
Identity = 83/225 (36.89%), Postives = 133/225 (59.11%), Query Frame = 0


Query: 196 QDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWI 255
           ++++ R    LVV +A  Y+  GL ++DL+Q G++G+L+G ERFDP RG++ STY+ +WI
Sbjct: 180 REKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWI 239

Query: 256 RKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNNGGRRY-SDDDIAKATGLPLAKVR 315
           ++++ R +A  SR +++P S+ +   ++ +A   L    RR  S ++IA+   L ++ VR
Sbjct: 240 KQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAVR 299

Query: 316 VASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLESRE 375
           +A    +   S+D+       M   E         PEE VKR+ MK +I  LL  L +RE
Sbjct: 300 LAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARE 359

Query: 376 RQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKD 420
            +VL L +GL    P S EEIGK L +S+E VR+I   A+ KL++
Sbjct: 360 SRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRN 404

[Close]

BLAST of Lcy01g011860 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 125.6 bits (314), Expect = 1.3e-28
Identity = 89/288 (30.90%), Postives = 156/288 (54.17%), Query Frame = 0


Query: 137 VARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQ 196
           V R   ++ +G+++  +  R+K+ L    G   S    A +  +   +LQ  L      +
Sbjct: 205 VVRLSKKIKSGLRLDDHKSRLKDRL----GCEPSDEQLAVSLKISRAELQAWLMECHLAR 264

Query: 197 DELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIR 256
           ++L  S   LV+ +A++Y   G  M DLVQ G +G+L+G+E+FD  +GFR STY+ +WIR
Sbjct: 265 EKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIR 324

Query: 257 KSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLAKVRVA 316
           + +SR +  NSR +++P  L + +  I+ A+  L   G   S D IA++  +   KVR A
Sbjct: 325 QGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNA 384

Query: 317 SNCLKVVGSVDQKMGDGLN----MKYMEFTADTSIQ-SPEETVKRKLMKKDILNLLEG-L 376
           +  +  V S+D+     LN      +  + ADT ++ +P        +K+++  L+   L
Sbjct: 385 TEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATL 444

Query: 377 ESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLK 419
             RE++++ L YGL D +  + E+I K + +S+E VR++   A+ KLK
Sbjct: 445 GEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLK 487

The following BLAST results are available for this feature:

BLAST of Lcy01g011860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24621	5.7e-109	49.66	RNA polymerase sigma factor sigC OS=Arabidopsis thaliana OX=3702 GN=SIGC PE=2 SV...	[more]
O22056	2.4e-51	32.21	RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV...	[more]
P26683	1.4e-43	32.92	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT...	[more]
P38023	2.4e-43	33.33	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]
Q9LD95	5.1e-41	30.12	RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Lcy01g011860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BBM8	2.9e-212	90.09	RNA polymerase sigma factor sigC OS=Cucumis melo OX=3656 GN=LOC103488161 PE=3 SV...	[more]
A0A5A7VCX9	8.3e-212	89.86	RNA polymerase sigma factor sigC OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A6J1BRC1	6.8e-206	89.39	RNA polymerase sigma factor sigC isoform X1 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1KA34	2.4e-203	87.97	RNA polymerase sigma factor sigC-like isoform X2 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1KCF5	2.4e-203	87.97	RNA polymerase sigma factor sigC-like isoform X1 OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of Lcy01g011860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008444981.1	5.9e-212	90.09	PREDICTED: RNA polymerase sigma factor sigC [Cucumis melo]	[more]
KAA0065060.1	1.7e-211	89.86	RNA polymerase sigma factor sigC [Cucumis melo var. makuwa]	[more]
XP_038884658.1	8.5e-211	89.93	RNA polymerase sigma factor sigC isoform X1 [Benincasa hispida]	[more]
XP_038884659.1	8.5e-211	89.93	RNA polymerase sigma factor sigC isoform X2 [Benincasa hispida]	[more]
XP_022131819.1	1.4e-205	89.39	RNA polymerase sigma factor sigC isoform X1 [Momordica charantia]	[more]

BLAST of Lcy01g011860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53920.1	4.1e-110	49.66	RNApolymerase sigma-subunit C	[more]
AT1G08540.1	1.7e-52	32.21	RNApolymerase sigma subunit 2	[more]
AT2G36990.1	3.6e-42	30.12	RNApolymerase sigma-subunit F	[more]
AT5G13730.1	1.4e-33	36.89	sigma factor 4	[more]
AT1G64860.1	1.3e-28	30.90	sigma factor A	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 223..236 score: 44.06 coord: 391..406 score: 40.69 coord: 247..255 score: 62.37 coord: 370..382 score: 45.91 coord: 406..417 score: 51.72
None	No IPR available	GENE3D	1.20.120.1810		coord: 84..268 e-value: 8.9E-31 score: 109.2
None	No IPR available	GENE3D	1.20.140.160		coord: 271..422 e-value: 3.6E-22 score: 81.2
None	No IPR available	PANTHER	PTHR30603:SF13	RNA POLYMERASE SIGMA FACTOR SIGC	coord: 1..429
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 1..429
None	No IPR available	CDD	cd06171	Sigma70_r4	coord: 360..418 e-value: 2.57874E-11 score: 57.1142
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 203..268 e-value: 4.3E-14 score: 52.1
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 366..418 e-value: 3.1E-16 score: 58.6
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 197..419 e-value: 1.6E-28 score: 97.4
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 279..353 e-value: 1.6E-8 score: 34.5
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 133..268
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 272..344
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 330..419

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g011860.1	Lcy01g011860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:2000112	regulation of cellular macromolecule biosynthetic process
biological_process	GO:2000142	regulation of DNA-templated transcription, initiation
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity
molecular_function	GO:0003700	DNA-binding transcription factor activity