Lcy01g010790 (gene) Sponge gourd (P93075) v1

Overview
NameLcy01g010790
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr01: 31073623 .. 31074042 (-)
RNA-Seq ExpressionLcy01g010790
SyntenyLcy01g010790
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGACGCTGCATATAACGATCGCAGTCGGGTATGTGGCTTTGAAGTGGTTGTTCGTCATACGGGGGGGGGGGGATTTGGTGGCGGCAATGCATGGTCAGTGGCATGCTCTTCTTTCTCCCCTAGCTGCGGAAGCTAAAGCTGTGTTCGAAGGTCTTAGACTTACTGAAAGATTTGAGTTTAACCAAATAATCTTGTTGTCTGATTGTCTTGGTTTAATTTCAATGATCAGTGGAGAGGCGGAGGTTGATGTGGAAATTCAAGCAACTATATGGGATATTAAAGCTCTCTACAGTCGCTTCCGTAGTTTCATACCCCTAGGGATCATAATAGGGTGGCTCATAGTCTGGCACAAAAGGGTCTGTATTCTTCTCCGAACCTTTGGGTTCAGGAGTTTCCTTGTTGGATTCAAGAATTGA

mRNA sequence

ATGTGGACGCTGCATATAACGATCGCAGTCGGGTATGTGGCTTTGAAGTGGTTGTTCGTCATACGGGGGGGGGGGGATTTGGTGGCGGCAATGCATGGTCAGTGGCATGCTCTTCTTTCTCCCCTAGCTGCGGAAGCTAAAGCTGTGTTCGAAGGTCTTAGACTTACTGAAAGATTTGAGTTTAACCAAATAATCTTGTTGTCTGATTGTCTTGGTTTAATTTCAATGATCAGTGGAGAGGCGGAGGTTGATGTGGAAATTCAAGCAACTATATGGGATATTAAAGCTCTCTACAGTCGCTTCCGTAGTTTCATACCCCTAGGGATCATAATAGGGTGGCTCATAGTCTGGCACAAAAGGGTCTGTATTCTTCTCCGAACCTTTGGGTTCAGGAGTTTCCTTGTTGGATTCAAGAATTGA

Coding sequence (CDS)

ATGTGGACGCTGCATATAACGATCGCAGTCGGGTATGTGGCTTTGAAGTGGTTGTTCGTCATACGGGGGGGGGGGGATTTGGTGGCGGCAATGCATGGTCAGTGGCATGCTCTTCTTTCTCCCCTAGCTGCGGAAGCTAAAGCTGTGTTCGAAGGTCTTAGACTTACTGAAAGATTTGAGTTTAACCAAATAATCTTGTTGTCTGATTGTCTTGGTTTAATTTCAATGATCAGTGGAGAGGCGGAGGTTGATGTGGAAATTCAAGCAACTATATGGGATATTAAAGCTCTCTACAGTCGCTTCCGTAGTTTCATACCCCTAGGGATCATAATAGGGTGGCTCATAGTCTGGCACAAAAGGGTCTGTATTCTTCTCCGAACCTTTGGGTTCAGGAGTTTCCTTGTTGGATTCAAGAATTGA

Protein sequence

MWTLHITIAVGYVALKWLFVIRGGGDLVAAMHGQWHALLSPLAAEAKAVFEGLRLTERFEFNQIILLSDCLGLISMISGEAEVDVEIQATIWDIKALYSRFRSFIPLGIIIGWLIVWHKRVCILLRTFGFRSFLVGFKN
Homology
The following BLAST results are available for this feature:
BLAST of Lcy01g010790 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy01g010790 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy01g010790 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy01g010790 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 25..104
e-value: 1.2E-10
score: 41.3
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 13..120
e-value: 5.6E-5
score: 25.1

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy01g010790.1Lcy01g010790.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity