Lcy01g008450 (gene) Sponge gourd (P93075) v1

Overview
NameLcy01g008450
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionDNA-directed RNA polymerase III subunit RPC5
LocationChr01: 19311232 .. 19317344 (+)
RNA-Seq ExpressionLcy01g008450
SyntenyLcy01g008450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAAGTTTCTATGCTGTTCTGAGGTATTTGATTCTTATTTCTGAAAAACTTACTCTAGAAGAGAAGTTCTTTTCCTCCTCTAAATGTATTTCATCGATGCATGTGAACTGGTGCATGGAGGAAAAAAAAATTAGTTTCAAGTCTCCACCTTGTAAGAAGGGGTTTATCTTCCTAAATTCCTTTTTTCTGACCCTTTCTTATTACGGAGAGTTGGCTCGAATATTTTGCTCACTACTTTGTTTTGGAAGTTATGTTGTGTGGTTTAATTTCATTGTTGGTTTCTAGCATTTCGTGCATTCTCTCATTGATTTTAATGGATATACCCGCTTGTAATTGTTCTCTGTTTCTTAATCCTTTTCCTTCTCTAGCTGTATTGTTATATATATGAATTCAATTCATATGCGAGAACTACTATGGAGAATATAATTTTGTATATTCAAAGTTTTCTTTATTTGGGTATTGGTGGGTCTTCAATGTGTTCTTTACAGGTTGAGAAGAAGGTGAAAGACTAGGGAAGGAGAAGCATTTGCATTTGGTGGTTGTGATGTTAATCATGCTTGGAAATCATCCATTTATTAAGCAAGTCATATCAGTTCAAGGTATGCTACTGTCTACTGGCTGAACCCATCTAAAATTAACAACTTTTTTTTCATTAGAAACAACCCAAGATTCCAACAATTTTTTCATTAAAGAAGGAAAAATTCCAAAATTGTCTTATCTTCAACTCATTTTCTTTCTTTATATTTAGTCCATTTCATAATTTTAACTTGACAGTCTTCTGTTTATGATTATATGTACTACAAGGCAAAGAGGTGAACATTTTCTTATGTTCCTTTCTGTTTTGGAAGAATTTGAACCATACTCTTTTAATTCTAACAGGTGAGAGTTCAACCTAGTACTGGAGAAGTGCAAGTCGATCTGAATGTTGATATTGAATCCAATAACTATGACAGTAAAGCTAATGGCAATTTGCAAATAAAGAAGCAGGTACCTTCTCTTATGGTTCTATCGATTACTAGTCTATATCCAATAACTATTGTTCTTTTAAGCTTTTGCTTTAATAGTTTTTGTATTAAGCTGCTTGGTTTAGCTACTGTGATCTTGATCCTCATTCGTGATGTGTTTGGGTTCTTGACGAATAATCCATTCTGAACTAGGGAATGTAACACATTTGTTTCGCCTAACACATTTGGGTGGCCTTTTAATGAGGTCTTGATCTTCAAAACTCACTCCAAGTGTCAACTCTAATGTTTTTATATTCATGTTTATATGTTCTTTTAACCCTCTTTTTTATTGCATATACTAGAGGAAACATTAAATTATAACATATGTGGTTAAGTTTGTCTTTGTGTATTTTTTTTTGGTTGAAGTTGCATATTTGAGGGAGTCTCTACATTTTTTTTCTTTTACTTTTTATTTGTAATGTTATTTTACCTTTTATTTCTGTAGTCGAAGTTGCATCATTATTTTGGGTTGAGTGACCCATCAAAGTTAGCTAAAAAAGAGACTTTGTATCGTAAGAAAATTTCCAACAAATGTCTAGGTGGGTAATTTTAAGAGTTGATACTTTTCTTCAAAGTTATTTTTGAGTTGTCTATGGATTTGATTTCGTAAATTACACTCTTTATTTCGACTTTCTCCTCTCTCGAACTTCCTTCTTCGCCATCTTGAGTTGTCTATGGATTTGATTTCGTAAGAGTTGATACCTTTCATTTTTCCTCTCTTGTTTTAAATGACACAACTCTTTAGTGCACCGTGTAATGTAACGTATATATATGTGGTTCATAGTCAAAGCTTAAATTAAAAGGACGAACTATTATTTTAAAAGTGTTTTTAACCTCTGTTAGCTATTTGTTCACAATTCTTAAGTTAATGAGATTGTTCTACTAATTGTGTGCAATACTTCTTCTTTTCTTTCCTTGTTAAAGTTGTTAATAAAAATTTTCTTTTGTAAGTCGTGAGAAAACCTGCAGAGGTGAAAGTTTTCAATTGAAAAACTATAGGATGATCAAGTTAGTTGAATTGTGTACTTTGGAGTAGTTGAGTTGCGTACTTTGAATATTGTATTCGAGCTTTTGTAAGTAAAATGAAACCATGAACTAAATGTTTGGTTTTTGGCTCTTAACATGAATATTGTATTCGAGCTTTTGTATGTGTTCTTTTTGTTGTTAATTCAATCATTTGTATTTAAAACCTTAATATTATGTAGGGATGAAAGTATATTTAGGTAATTAGTTAATTTGATATTAGCTAGTAGTTTGCTATGTTTCCATGGGTTTGTGTTTCTTTGCTTATTCTGTTTGAAGTATGTGTCTATTTAACCTATGAAATTGCCTTGGTTTCCTAATTTTATTTGAGTTTCAAGTTTTGTTCTATGGCTGCATATATAAAAATGAATTTTCATTTATATATTTGTTGCTGGACTACATAATTACATTTACAATTTGGGTGCATGAACCAATCTTCCAATAGAGAAGCTATTTAAAATTTCTAAATCCCCAGGTATTCAATGTCAGGATATGTCATCTAACTCAAAGGTTCTATGTCAGATGTTGAAACATAGTTATGTAGAATTGTAAATCTTTTCCAAGTTTTGAATGTAAATAAGGATGTTGCGCTATCTTAGCAAGTTTTCATCCCCTAAACGTGATATTGGATGCTATTTTGTTGGTTTTTTTTTGCTGGATGGGATCATTATTGCTTACTAAACGTGATACTGGATGTTGTTCTGTTGATTTCTCCGATTTCTCCGATTTCTCCATGTTTACTGTTATTCACTATTCATTTGGGGATTCAACTTTAAAGCAAGTCTTGGGAGGGACTTCGATAATCTAGGGTTGTATTTCCTCACACTTCAATTGAAACTGATATTATCCTTTTATATTTTATTTGAAATATACTTTTAAGAAGTTTCTTTTATCTGTTAAAATTTTCCCCTAATATATATTGCAGTTGATGTTCAATAAGGTTCTCTTTGCTTAGGCTCAACCTCACCAGACAATTGTAGATAGGCTAACTCTGCAGATGGCAGAAGCTGCCCAAGCGGTTGTTGAGGAACATGTAAGAATAGAAACTCATTGTCTATTGCAATGTACATTTAAAAGATCTTTTCTAACATGGTTCTTTATGCTTGCACAACTACTAAACTTGTAGTCTTAGCCATGCCTCTCATGTTAATATTGGTTAAGACAACACAGTTACCGATAAAGAAATATCAAGTTGCGATATTAAAAGAAACACCCACAATAGTATGATATCAAAAGAGGAAAATGTTCTAATAGGATTTGTTGCTTAAGGGATTGTGGAATGACAATGGGGTTTGGTAGTAGGAGTAGGACTGAGTTAATTTGCATCCCTTTCTCATGAGAAAGCTATCTTTTAGTGTGCGTTAGTATTTAAATAAAGTTTAGTATATTTAGTAACCATTTTGCTCTCATCTTGTATGACCCGTAAATTGAGTTTCTATATCATGGAATTTGAAAGTCAAAGTTACATTTAGTATGTAAGTGTTCTTTTTTTTTTTTCAAGAAAAATCATGAGTTTGTTGATCTCATAATCTTTTTAAACTCAAGCTTTTGAAATTTACCTTGTGGGTTATAGTGTTATACTACCTTTTAAAAGCTTCGATATATGAAAAAACTTAAGTATCTGCAATTTGTTCTTTTGCACATTCAGAGCAGGTACTAAACAAATTTAGGCTTTACAATCTCAAACTCTTCAATTGTACACCTTCTTTGACAAACTTTGTCCAAGGCAATGACCACGTTTGTCTAGCCGAAGATATACACTAAGGAAATACTATCTGATGAAACCATGCTGATCTCATAGTCCCATATCATGAACTTCTGAAATCCATCTTAAATCCTTCCAAACACAAGGGGATAGCCCTACTTTTGTATCAATTTAATAATCTATTAACTGGATGTGTGTTTGTGGATGTGCCTTCTCATTCATGTTTGAAATCTTTTCTTTTTCCACACTTGTCATCATTAGCAATGCAATTGATTTTGTTTTAGAAACATTAAGTTTGTATATTCAAAGGTTTCTTTAATTTTTAGATTTTGAACTAACATCTAACATCTTTGTTATATTTCAAAAAACAAAGGGCTTTGGTCGCAGAGAATAGTTGGGGACCAACAACACAAGACATACTAAGAATGAGGCAAGTTACCAAAAATCTAAAGAAACAAAGGCTCATGTTGCTCGATTGTAAAGTATGGTTGAATCACAACAAGTCATAATCAAAGAAATATTAAGAAAGTTGACAAGTGGAGAAGATACATCGTCATCTAATGTAGAACGGAATCCAGAACAACCAAATGACAATTAAAAGGTAATATTTATAAGATGCTCTTCTTAAAAGTCTAACTTGTTCTGAAGTGTTGGATTATATTAAATGTTAGAGTGTTATGCTTATCCTGCAATTATGGTAGTCGTAACTTAAAATTAGATTGAACGTTGAAAAGTATGGAAGTTCATTCATTTGTCAGGTTGACTTGGTATAACTAGAGTACTATATGACTATCCTGCAGTTATGGTAGTCATAGCTTTGTTATGATTTGTGTTGATAAGTTTGTTTTCAATTGAGTTGTTATGTTCGCATTTAGTTCTTTTAATAAGTTGTTACATTCTTGTGTTTAGTTCCTTTGAGTATGAGATTGCTTAAGATGAAGGATTAGCTATATAAAAGTAGTTTGGTGGCCGACATGGAGACTTGGAGGAAGGAAAATGAGCTAAACAATTGAGTTGTTGTGTTAAGTTCTTTTCTATTGAGTTGTTTTGTTTATGTGATTAGCTATGTTGTTGCATTTAGTTGTTTTAATGATTTAGTTGTTGACATGGACAAGTTTAGTTGTTTCATTAAAAAAAAGTTTTGATGATTTGAGATAAGTGCAAAAGTTTGAGTCATTATAAGCTTAGTTTCATTGAGTTGTTGAAAGTTTAGTCTCAATTCATTTCCATTGAGTTGTGTTTATGAGGTTCACTCATTGTTGCACTTGGTTGTTTTGGTTGGTAAGTTAAGTTGTTCCATTCAAAAAGTTTCTATGATTTGAGATGAGTTGAAAAGTTTGAGTTGCTATAAATTTAATTTCATTGTGTTGATGAAAGTTTAGTCTCACTTGCTTTCCATTGAGTTTTGTTAACGAGGATCGCTACATTGATGTACTTAGTTGTTTTCATTAAAAAAGTTTCGAAGGTTTGAGATAAGTTCAAAAGTTTAAGTTATAAGTTTAGTTTCATTGAGTTGAGATGAGATGAAGGTTTAGTCTCATTTGTTTTCCGTTGAGTTGTGTTTATGAGGATCACTACATTGATACACGTAGTTGTTTGAACAAGTTTAGCAATTTTGGTTGATAAGTTTAGTTGTTTTATTCAAAAAGTTTTAATTTGAGATAAGTTTAATCTCATTTTTTTTTTCCATTAAGTTGTGTTTATGAGAATCACTACATTGTTGCACTTAGTTGTATTAGCAAGTTTAGTAGTTTTGGTTGATAAGTTTAATTGTTTCATTGTTGCACTTTGGCACCTGGCCAAGCCATTAGTTTTGGTTGATAAGTTAAGTTTAGTGGTTTTGATTGTAATGTTTCAAATCTCTAATCCTATACTTGTAATGTTATTGTTTATGGTTTAATTGTTATGTTCATAAATTTTGATAAGAATTGAGTATCGTTATTATGGTCATAAGTATTGATAAGTTTAATTGTTCGTTCGTCCCATTTTGGTGAGTTTAATATTTATGTTCATGATAAGTCTAGTTGATATGTTCCTAAATTGTGATAAGCTTAATTTAATTGTTATGTTCACGTTTTGATAACTTTAATAATTCGTGTTAGTTTTTTATGAGTCTAATATTTGGGAAATTGTCAAAAATAGGACAAAATGATGGGGATAAAGAGATTTAGGATGATTTTTATTTTTATAGAGTAGTAGGACTTTTGAGGGTATGAAATTACCATGTTGCCCTTCTTTGTTGCTTGAGGAACAAAATGTAAGTAGTTTGCTTTTTTTTTTTTAGGTATTTGATTATGAATATTTGGTTGTTATTTTGTTTGTCTTAGAAGGAAAAAAAAAACGGAATGCAAAATTTGACTCAAGTTCGTGTTTTAGT

mRNA sequence

ATGAGGAAGTTTCTATGCTGTTCTGAGGTGAGAGTTCAACCTAGTACTGGAGAAGTGCAAGTCGATCTGAATGTTGATATTGAATCCAATAACTATGACAGTAAAGCTAATGGCAATTTGCAAATAAAGAAGCAGGCTCAACCTCACCAGACAATTGTAGATAGGCTAACTCTGCAGATGGCAGAAGCTGCCCAAGCGGTTGTTGAGGAACATGGCTTTGGTCGCAGAGAATAGTTGGGGACCAACAACACAAGACATACTAAGAATGAGGCAAGTTACCAAAAATCTAAAGAAACAAAGGCTCATGTTGCTCGATTGTAAAGTATGGTTGAATCACAACAAGTCATAATCAAAGAAATATTAAGAAAGTTGACAAGTGGAGAAGATACATCGTCATCTAATGTAGAACGGAATCCAGAACAACCAAATGACAATTAAAAGGTAATATTTATAAGATGCTCTTCTTAAAAGTCTAACTTGTTCTGAAGTGTTGGATTATATTAAATGTTAGAGTGTTATGCTTATCCTGCAATTATGGTAGTCGTAACTTAAAATTAGATTGAACGTTGAAAAGTATGGAAGTTCATTCATTTGTCAGGTTGACTTGGTATAACTAGAGTACTATATGACTATCCTGCAGTTATGGTAGTCATAGCTTTGTTATGATTTGTGTTGATAAGTTTGTTTTCAATTGAGTTGTTATGTTCGCATTTAGTTCTTTTAATAAGTTGTTACATTCTTGTGTTTAGTTCCTTTGAGTATGAGATTGCTTAAGATGAAGGATTAGCTATATAAAAGTAGTTTGGTGGCCGACATGGAGACTTGGAGGAAGGAAAATGAGCTAAACAATTGAGTTGTTGTGTTAAGTTCTTTTCTATTGAGTTGTTTTGTTTATGTGATTAGCTATGTTGTTGCATTTAGTTGTTTTAATGATTTAGTTGTTGACATGGACAAGTTTAGTTGTTTCATTAAAAAAAAGTTTTGATGATTTGAGATAAGTGCAAAAGTTTGAGTCATTATAAGCTTAGTTTCATTGAGTTGTTGAAAGTTTAGTCTCAATTCATTTCCATTGAGTTGTGTTTATGAGGTTCACTCATTGTTGCACTTGGTTGTTTTGGTTGGTAAGTTAAGTTGTTCCATTCAAAAAGTTTCTATGATTTGAGATGAGTTGAAAAGTTTGAGTTGCTATAAATTTAATTTCATTGTGTTGATGAAAGTTTAGTCTCACTTGCTTTCCATTGAGTTTTGTTAACGAGGATCGCTACATTGATGTACTTAGTTGTTTTCATTAAAAAAGTTTCGAAGGTTTGAGATAAGTTCAAAAGTTTAAGTTATAAGTTTAGTTTCATTGAGTTGAGATGAGATGAAGGTTTAGTCTCATTTGTTTTCCGTTGAGTTGTGTTTATGAGGATCACTACATTGATACACGTAGTTGTTTGAACAAGTTTAGCAATTTTGGTTGATAAGTTTAGTTGTTTTATTCAAAAAGTTTTAATTTGAGATAAGTTTAATCTCATTTTTTTTTTCCATTAAGTTGTGTTTATGAGAATCACTACATTGTTGCACTTAGTTGTATTAGCAAGTTTAGTAGTTTTGGTTGATAAGTTTAATTGTTTCATTGTTGCACTTTGGCACCTGGCCAAGCCATTAGTTTTGGTTGATAAGTTAAGTTTAGTGGTTTTGATTGTAATGTTTCAAATCTCTAATCCTATACTTGTAATGTTATTGTTTATGGTTTAATTGTTATGTTCATAAATTTTGATAAGAATTGAGTATCGTTATTATGGTCATAAGTATTGATAAGTTTAATTGTTCGTTCGTCCCATTTTGGTGAGTTTAATATTTATGTTCATGATAAGTCTAGTTGATATGTTCCTAAATTGTGATAAGCTTAATTTAATTGTTATGTTCACGTTTTGATAACTTTAATAATTCGTGTTAGTTTTTTATGAGTCTAATATTTGGGAAATTGTCAAAAATAGGACAAAATGATGGGGATAAAGAGATTTAGGATGATTTTTATTTTTATAGAGTAGTAGGACTTTTGAGGGTATGAAATTACCATGTTGCCCTTCTTTGTTGCTTGAGGAACAAAATGTAAGTAGTTTGCTTTTTTTTTTTTAGGTATTTGATTATGAATATTTGGTTGTTATTTTGTTTGTCTTAGAAGGAAAAAAAAAACGGAATGCAAAATTTGACTCAAGTTCGTGTTTTAGT

Coding sequence (CDS)

ATGAGGAAGTTTCTATGCTGTTCTGAGGTGAGAGTTCAACCTAGTACTGGAGAAGTGCAAGTCGATCTGAATGTTGATATTGAATCCAATAACTATGACAGTAAAGCTAATGGCAATTTGCAAATAAAGAAGCAGGCTCAACCTCACCAGACAATTGTAGATAGGCTAACTCTGCAGATGGCAGAAGCTGCCCAAGCGGTTGTTGAGGAACATGGCTTTGGTCGCAGAGAATAG

Protein sequence

MRKFLCCSEVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQAQPHQTIVDRLTLQMAEAAQAVVEEHGFGRRE
Homology
[Close]
BLAST of Lcy01g008450 vs. ExPASy TrEMBL
Match: A0A6J1JCH8 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483153 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 7.9e-09
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 7   CSEVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ 46
           C EVRV+P+TGEV+VDLNVDIESNNYDSKA+ NLQ+KKQ
Sbjct: 160 CDEVRVKPTTGEVEVDLNVDIESNNYDSKADANLQMKKQ 198

[Close]
BLAST of Lcy01g008450 vs. ExPASy TrEMBL
Match: A0A6J1EMD6 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435914 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 7.9e-09
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 7   CSEVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ 46
           C EVRV+P+TGEV+VDLNVDIESNNYDSKA+ NLQ+KKQ
Sbjct: 159 CDEVRVKPTTGEVEVDLNVDIESNNYDSKADANLQMKKQ 197

[Close]
BLAST of Lcy01g008450 vs. ExPASy TrEMBL
Match: A0A6J1JAC5 (DNA-directed RNA polymerase III subunit RPC5 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111483153 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 7.9e-09
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 7   CSEVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ 46
           C EVRV+P+TGEV+VDLNVDIESNNYDSKA+ NLQ+KKQ
Sbjct: 160 CDEVRVKPTTGEVEVDLNVDIESNNYDSKADANLQMKKQ 198

[Close]
BLAST of Lcy01g008450 vs. ExPASy TrEMBL
Match: A0A6J1ENB5 (DNA-directed RNA polymerase III subunit RPC5 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111435914 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 7.9e-09
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 7   CSEVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ 46
           C EVRV+P+TGEV+VDLNVDIESNNYDSKA+ NLQ+KKQ
Sbjct: 159 CDEVRVKPTTGEVEVDLNVDIESNNYDSKADANLQMKKQ 197

[Close]
BLAST of Lcy01g008450 vs. ExPASy TrEMBL
Match: A0A6J1C4C6 (DNA-directed RNA polymerase III subunit RPC5 OS=Momordica charantia OX=3673 GN=LOC111008259 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.0e-08
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 7   CSEVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ 46
           C EVRV+PS+GEV+VDLNVDIESNNYDSKA G+LQ+KKQ
Sbjct: 159 CEEVRVKPSSGEVEVDLNVDIESNNYDSKAEGSLQMKKQ 197

[Close]
BLAST of Lcy01g008450 vs. NCBI nr
Match: XP_022929283.1 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita moschata] >XP_022929284.1 DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita moschata] >XP_022929285.1 DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita moschata] >XP_022929286.1 DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita moschata] >XP_022929287.1 DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita moschata] >XP_022929288.1 DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita moschata])

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-08
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 7   CSEVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ 46
           C EVRV+P+TGEV+VDLNVDIESNNYDSKA+ NLQ+KKQ
Sbjct: 159 CDEVRVKPTTGEVEVDLNVDIESNNYDSKADANLQMKKQ 197

[Close]
BLAST of Lcy01g008450 vs. NCBI nr
Match: XP_022985072.1 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita maxima] >XP_022985073.1 DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita maxima] >XP_022985074.1 DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita maxima])

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-08
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 7   CSEVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ 46
           C EVRV+P+TGEV+VDLNVDIESNNYDSKA+ NLQ+KKQ
Sbjct: 160 CDEVRVKPTTGEVEVDLNVDIESNNYDSKADANLQMKKQ 198

[Close]
BLAST of Lcy01g008450 vs. NCBI nr
Match: XP_022929289.1 (DNA-directed RNA polymerase III subunit RPC5 isoform X2 [Cucurbita moschata])

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-08
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 7   CSEVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ 46
           C EVRV+P+TGEV+VDLNVDIESNNYDSKA+ NLQ+KKQ
Sbjct: 159 CDEVRVKPTTGEVEVDLNVDIESNNYDSKADANLQMKKQ 197

[Close]
BLAST of Lcy01g008450 vs. NCBI nr
Match: XP_023552355.1 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023552356.1 DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023552357.1 DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023552358.1 DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-08
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 7   CSEVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ 46
           C EVRV+P+TGEV+VDLNVDIESNNYDSKA+ NLQ+KKQ
Sbjct: 159 CDEVRVKPTTGEVEVDLNVDIESNNYDSKADANLQMKKQ 197

[Close]
BLAST of Lcy01g008450 vs. NCBI nr
Match: XP_023552359.1 (DNA-directed RNA polymerase III subunit RPC5 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-08
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 7   CSEVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ 46
           C EVRV+P+TGEV+VDLNVDIESNNYDSKA+ NLQ+KKQ
Sbjct: 159 CDEVRVKPTTGEVEVDLNVDIESNNYDSKADANLQMKKQ 197

[Close]
BLAST of Lcy01g008450 vs. TAIR 10
Match: AT5G49530.1 (SIN-like family protein )

HSP 1 Score: 44.3 bits (103), Expect = 5.2e-05
Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 0 

Query: 7   CSEVRVQPSTGEVQVDLNVDIESNNYDSKANGNLQIKKQ 46
           C EVRV PST +V++DL++D+ S NYDS  N  L + KQ
Sbjct: 156 CEEVRVNPSTSQVEIDLSMDVHSKNYDS--NFGLNMTKQ 192

The following BLAST results are available for this feature:
BLAST of Lcy01g008450 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy01g008450 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JCH87.9e-0982.05DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucurbita maxima OX=3... [more]
A0A6J1EMD67.9e-0982.05DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucurbita moschata OX... [more]
A0A6J1JAC57.9e-0982.05DNA-directed RNA polymerase III subunit RPC5 isoform X2 OS=Cucurbita maxima OX=3... [more]
A0A6J1ENB57.9e-0982.05DNA-directed RNA polymerase III subunit RPC5 isoform X2 OS=Cucurbita moschata OX... [more]
A0A6J1C4C61.0e-0882.05DNA-directed RNA polymerase III subunit RPC5 OS=Momordica charantia OX=3673 GN=L... [more]
BLAST of Lcy01g008450 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022929283.11.6e-0882.05DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita moschata] >XP... [more]
XP_022985072.11.6e-0882.05DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita maxima] >XP_0... [more]
XP_022929289.11.6e-0882.05DNA-directed RNA polymerase III subunit RPC5 isoform X2 [Cucurbita moschata][more]
XP_023552355.11.6e-0882.05DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita pepo subsp. p... [more]
XP_023552359.11.6e-0882.05DNA-directed RNA polymerase III subunit RPC5 isoform X2 [Cucurbita pepo subsp. p... [more]
BLAST of Lcy01g008450 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G49530.15.2e-0553.85SIN-like family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy01g008450.1Lcy01g008450.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005666 RNA polymerase III complex
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity