Lcy01g007060 (gene) Sponge gourd (P93075) v1

Overview
NameLcy01g007060
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionEndo/exonuclease/phosphatase domain-containing protein
LocationChr01: 11529624 .. 11529992 (+)
RNA-Seq ExpressionLcy01g007060
SyntenyLcy01g007060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACACTATGTTGGAATGTCTGGGGCTTGGGTAATCCTAGGACGTTTTGTGTTGTTAGTGACGGTATACGTCACTATAACCCAGATTTACTGTTTTTGATGGAAACAAAATGTAAGGCAAATGCATGCAATATTAATAAAATAAAGATGGCTTTCAATTATTCAGGGTGTTTCGTTGTGGATTGTCTTGGTAAAAGTGGAGGTTTAGGTCTTTTGTGGAAAGAGGATGTAGATGTCACAATAAGATCTTTTACTCATTTTCATATTGATGCATCAATTAAGTGGGAGGCCAAATTGTGGCGTTTCTTTGGATTATATGGGCATCCAATCCCTAGTCAAAGAAAATTTACTTGGGAATTAATCTGA

mRNA sequence

ATGAAAACACTATGTTGGAATGTCTGGGGCTTGGGTAATCCTAGGACGTTTTGTGTTGTTAGTGACGGTATACGTCACTATAACCCAGATTTACTGTTTTTGATGGAAACAAAATGTAAGGCAAATGCATGCAATATTAATAAAATAAAGATGGCTTTCAATTATTCAGGGTGTTTCGTTGTGGATTGTCTTGGTAAAAGTGGAGGTTTAGGTCTTTTGTGGAAAGAGGATGTAGATGTCACAATAAGATCTTTTACTCATTTTCATATTGATGCATCAATTAAGTGGGAGGCCAAATTGTGGCGTTTCTTTGGATTATATGGGCATCCAATCCCTAGTCAAAGAAAATTTACTTGGGAATTAATCTGA

Coding sequence (CDS)

ATGAAAACACTATGTTGGAATGTCTGGGGCTTGGGTAATCCTAGGACGTTTTGTGTTGTTAGTGACGGTATACGTCACTATAACCCAGATTTACTGTTTTTGATGGAAACAAAATGTAAGGCAAATGCATGCAATATTAATAAAATAAAGATGGCTTTCAATTATTCAGGGTGTTTCGTTGTGGATTGTCTTGGTAAAAGTGGAGGTTTAGGTCTTTTGTGGAAAGAGGATGTAGATGTCACAATAAGATCTTTTACTCATTTTCATATTGATGCATCAATTAAGTGGGAGGCCAAATTGTGGCGTTTCTTTGGATTATATGGGCATCCAATCCCTAGTCAAAGAAAATTTACTTGGGAATTAATCTGA

Protein sequence

MKTLCWNVWGLGNPRTFCVVSDGIRHYNPDLLFLMETKCKANACNINKIKMAFNYSGCFVVDCLGKSGGLGLLWKEDVDVTIRSFTHFHIDASIKWEAKLWRFFGLYGHPIPSQRKFTWELI
Homology
BLAST of Lcy01g007060 vs. ExPASy TrEMBL
Match: A0A803Q9W0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.9e-26
Identity = 61/123 (49.59%), Postives = 79/123 (64.23%), Query Frame = 0

Query: 1   MKTLCWNVWGLGNPRTFCVVSDGIRHYNPDLLFLMETKCKANACNINKIKMAFNYSGCFV 60
           M +L WNV GLGNP T   +++ ++ + P ++FL ET+ K+N     +I++ F   GCF 
Sbjct: 435 MNSLFWNVQGLGNPWTTTALANIVKDHQPGIVFLSETRSKSNYLETIRIRLGF--EGCFC 494

Query: 61  VDCLGKSGGLGLLWKEDVDVTIRSFTHFHIDASIKWEAKL-WRFFGLYGHPIPSQRKFTW 120
           VD  GKSGGL LLWKE   V + SF  FHIDA I  E  L WRF G YG P PSQRK +W
Sbjct: 495 VDAKGKSGGLALLWKEPFTVHLNSFNDFHIDAWINKEEDLAWRFTGFYGDPDPSQRKHSW 554

Query: 121 ELI 123
           +L+
Sbjct: 555 QLL 555

BLAST of Lcy01g007060 vs. ExPASy TrEMBL
Match: A0A5C7IHU5 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_003479 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.7e-24
Identity = 53/120 (44.17%), Postives = 79/120 (65.83%), Query Frame = 0

Query: 4   LCWNVWGLGNPRTFCVVSDGIRHYNPDLLFLMETKCKANACNINKIKMAFNYSGCFVVDC 63
           LCWNV GLGNPR F  +   ++ ++PDL+FL  +K K+N    + +K++  ++ CF VD 
Sbjct: 4   LCWNVLGLGNPRAFAALRRLMKKHSPDLVFL--SKTKSNGFKADNVKVSLGFNNCFSVDS 63

Query: 64  LGKSGGLGLLWKEDVDVTIRSFTHFHIDASIKW-EAKLWRFFGLYGHPIPSQRKFTWELI 123
            G SGGL LLWK+ + V++ SF+  HIDA I   +  +W F G YG P P++R+F+W L+
Sbjct: 64  CGNSGGLLLLWKDSIVVSVLSFSSGHIDARISMSDGFVWHFSGFYGDPNPNKRRFSWSLL 121

BLAST of Lcy01g007060 vs. ExPASy TrEMBL
Match: A0A2I4EU33 (uncharacterized protein LOC108992721 OS=Juglans regia OX=51240 GN=LOC108992721 PE=4 SV=2)

HSP 1 Score: 118.6 bits (296), Expect = 1.8e-23
Identity = 51/124 (41.13%), Postives = 75/124 (60.48%), Query Frame = 0

Query: 1   MKTLCWNVWGLGNPRTFCVVSDGIRHYNPDLLFLMETKCKANACNINKIKMAFNYSGCFV 60
           M  + WN WG GNPRT   +   ++  +P L+FLMETKC  +   + K+K       CFV
Sbjct: 1   MICISWNYWGFGNPRTVHELHLLVKTKSPSLIFLMETKCSRS--KMEKVKQKLGMKNCFV 60

Query: 61  VDCLGKSGGLGLLWKEDVDVTIRSFTHFHIDASIKWEAKL--WRFFGLYGHPIPSQRKFT 120
           VD  G SGGL LLWK+D+ V++++++HFHI   +K    +  W   G YGHP+ ++R  +
Sbjct: 61  VDSKGASGGLTLLWKDDLVVSLKNYSHFHISIKLKIRGNIGAWLMTGFYGHPLTAKRSSS 120

Query: 121 WELI 123
           W L+
Sbjct: 121 WNLL 122

BLAST of Lcy01g007060 vs. ExPASy TrEMBL
Match: A0A803PBM9 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.3e-23
Identity = 56/123 (45.53%), Postives = 77/123 (62.60%), Query Frame = 0

Query: 1   MKTLCWNVWGLGNPRTFCVVSDGIRHYNPDLLFLMETKCKANACNINKIKMAFNYSGCFV 60
           MK L WNV GLGNP T   +   +  ++P+L+F+ E++ K        ++++  Y GCFV
Sbjct: 427 MKLLLWNVQGLGNPWTVRTLKSLVNRWDPELVFISESRLKKG--KAEALRVSLGYDGCFV 486

Query: 61  VDCLGKSGGLGLLWKEDVDVTIRSFTHFHIDASI-KWEAKLWRFFGLYGHPIPSQRKFTW 120
           V+  GKSGGL LLW   VD  I SF+ FHID+ I K E + WRF G YG P P+QR  +W
Sbjct: 487 VEAHGKSGGLILLWSNMVDCNIMSFSSFHIDSFIRKEEGQWWRFTGFYGDPDPTQRCESW 546

Query: 121 ELI 123
           +L+
Sbjct: 547 KLL 547

BLAST of Lcy01g007060 vs. ExPASy TrEMBL
Match: A0A5C7I5K8 (DUF4283 domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_010806 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 5.2e-23
Identity = 56/120 (46.67%), Postives = 76/120 (63.33%), Query Frame = 0

Query: 4   LCWNVWGLGNPRTFCVVSDGIRHYNPDLLFLMETKCKANACNINKIKMAFNYSGCFVVDC 63
           LCWNV GLGNP T   +   ++ ++PDL+FL ETK + N     KI+ A  Y G F VD 
Sbjct: 482 LCWNVRGLGNPCTVAALKKLVKKHSPDLIFLSETKMERN--RAEKIREALGYKGGFGVDS 541

Query: 64  LGKSGGLGLLWKEDVDVTIRSFTHFHIDASIK-WEAKLWRFFGLYGHPIPSQRKFTWELI 123
           +G SGGL LLW ED +V+++SF+  HID  I+  +   W+F G+YG P P++R   W LI
Sbjct: 542 IGSSGGLLLLWNEDCNVSVQSFSVGHIDVRIQVRDGPWWKFSGMYGEPNPNKRPNFWNLI 599

BLAST of Lcy01g007060 vs. NCBI nr
Match: KAF5449841.1 (hypothetical protein F2P56_030246 [Juglans regia])

HSP 1 Score: 132.5 bits (332), Expect = 2.5e-27
Identity = 64/124 (51.61%), Postives = 81/124 (65.32%), Query Frame = 0

Query: 1   MKTLCWNVWGLGNPRTFCVVSDGIRHYNPDLLFLMETKCKANACNINKIKMAFNYSGCFV 60
           MK LCWN  GLGNP+    + D I   +PDL+FL ETK +A A    K K  F +  CF 
Sbjct: 1   MKILCWNSSGLGNPQGIRALRDLITREDPDLVFLQETKMRAQAMTTCKYK--FGFVNCFF 60

Query: 61  VDCLGKSGGLGLLWKEDVDVTIRSFTHFHIDASIKWEAKL--WRFFGLYGHPIPSQRKFT 120
           VDC+G+SGGL LLWK ++ V+I SF+ +HIDA I+ E+ L  WRF G+YGHP  S R  T
Sbjct: 61  VDCVGRSGGLSLLWKREISVSISSFSRYHIDACIQ-ESDLAEWRFTGVYGHPDASNRYLT 120

Query: 121 WELI 123
           W L+
Sbjct: 121 WNLM 121

BLAST of Lcy01g007060 vs. NCBI nr
Match: XP_042950313.1 (uncharacterized protein LOC122282426 [Carya illinoinensis])

HSP 1 Score: 131.7 bits (330), Expect = 4.2e-27
Identity = 64/123 (52.03%), Postives = 76/123 (61.79%), Query Frame = 0

Query: 1   MKTLCWNVWGLGNPRTFCVVSDGIRHYNPDLLFLMETKCKANACNINKIKMAFNYSGCFV 60
           MKT+CWN  GLGNP     + D I    PDLLFL ETK      +  K K+ F    CF 
Sbjct: 1   MKTICWNSRGLGNPSGIRALRDLIAREGPDLLFLQETKLSTKGMDALKCKLGF--VNCFS 60

Query: 61  VDCLGKSGGLGLLWKEDVDVTIRSFTHFHIDASIKW-EAKLWRFFGLYGHPIPSQRKFTW 120
           VD  G+SGGLGLLW  D+ V +RSF+ +HID  IK  +  +WRF GLYGHP  S+R FTW
Sbjct: 61  VDSEGRSGGLGLLWNSDLGVELRSFSQYHIDVHIKIDDLMVWRFTGLYGHPDTSRRTFTW 120

Query: 121 ELI 123
            LI
Sbjct: 121 NLI 121

BLAST of Lcy01g007060 vs. NCBI nr
Match: XP_042980077.1 (uncharacterized protein LOC122310261 [Carya illinoinensis])

HSP 1 Score: 128.3 bits (321), Expect = 4.7e-26
Identity = 63/123 (51.22%), Postives = 75/123 (60.98%), Query Frame = 0

Query: 1   MKTLCWNVWGLGNPRTFCVVSDGIRHYNPDLLFLMETKCKANACNINKIKMAFNYSGCFV 60
           MKT+CWN  GLGNP     + D I    PDLLFL ETK      +  K K+ F    CF 
Sbjct: 1   MKTICWNSCGLGNPSGIRALRDLIAREGPDLLFLQETKLLTKGMDTLKRKLGF--VNCFS 60

Query: 61  VDCLGKSGGLGLLWKEDVDVTIRSFTHFHIDASIKW-EAKLWRFFGLYGHPIPSQRKFTW 120
           VD  G+SGGLGLLW  D+ V +RSF+ +HID  IK  +  +WRF GLYGHP   +R FTW
Sbjct: 61  VDSEGRSGGLGLLWNSDLRVELRSFSKYHIDVHIKMDDLMVWRFTGLYGHPDALRRTFTW 120

Query: 121 ELI 123
            LI
Sbjct: 121 NLI 121

BLAST of Lcy01g007060 vs. NCBI nr
Match: XP_030495126.1 (uncharacterized protein LOC115710915 [Cannabis sativa])

HSP 1 Score: 124.0 bits (310), Expect = 8.8e-25
Identity = 60/123 (48.78%), Postives = 76/123 (61.79%), Query Frame = 0

Query: 1   MKTLCWNVWGLGNPRTFCVVSDGIRHYNPDLLFLMETKCKANACNINKIKMAFNYSGCFV 60
           M +L WNV GLGNP T   ++  ++ + P L+FL ET+ K+    +  I++   Y GCF 
Sbjct: 1   MNSLFWNVQGLGNPWTTTALATIVKDHQPGLVFLSETRSKST--YLESIRIRLGYEGCFC 60

Query: 61  VDCLGKSGGLGLLWKEDVDVTIRSFTHFHIDASIKWEAKL-WRFFGLYGHPIPSQRKFTW 120
           VD  GKSGGL LLWKE   V + SF  FHIDA I  E  L WRF G Y  P PSQRK +W
Sbjct: 61  VDAKGKSGGLALLWKEPFTVHLNSFNDFHIDAWINKEEDLAWRFTGFYRDPDPSQRKHSW 120

Query: 121 ELI 123
           +L+
Sbjct: 121 QLL 121

BLAST of Lcy01g007060 vs. NCBI nr
Match: XP_024039545.1 (uncharacterized protein LOC112098147 [Citrus clementina])

HSP 1 Score: 122.1 bits (305), Expect = 3.3e-24
Identity = 57/123 (46.34%), Postives = 76/123 (61.79%), Query Frame = 0

Query: 1   MKTLCWNVWGLGNPRTFCVVSDGIRHYNPDLLFLMETKCKANACNINKIKMAFNYSGCFV 60
           MK L WN+ GLGNPR +  +   ++ ++P L+FL ETK K    ++N++    NY  CF 
Sbjct: 1   MKILSWNIRGLGNPRMYLALKKILQVHSPHLVFLCETKLK--TMHMNEVSRKLNYENCFA 60

Query: 61  VDCLGKSGGLGLLWKEDVDVTIRSFTHFHIDASIKWE-AKLWRFFGLYGHPIPSQRKFTW 120
           V  +GK GGL LLWK + +V I+SF   HIDA +  E  KL R  G+YGHP   QRK TW
Sbjct: 61  VSSIGKGGGLALLWKSETNVQIKSFNQHHIDAEVVMENGKLIRCTGVYGHPDMRQRKHTW 120

Query: 121 ELI 123
            L+
Sbjct: 121 TLL 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A803Q9W03.9e-2649.59Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A5C7IHU54.7e-2444.17Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_003479 PE=4 SV=1[more]
A0A2I4EU331.8e-2341.13uncharacterized protein LOC108992721 OS=Juglans regia OX=51240 GN=LOC108992721 P... [more]
A0A803PBM92.3e-2345.53Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A5C7I5K85.2e-2346.67DUF4283 domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_010806 ... [more]
Match NameE-valueIdentityDescription
KAF5449841.12.5e-2751.61hypothetical protein F2P56_030246 [Juglans regia][more]
XP_042950313.14.2e-2752.03uncharacterized protein LOC122282426 [Carya illinoinensis][more]
XP_042980077.14.7e-2651.22uncharacterized protein LOC122310261 [Carya illinoinensis][more]
XP_030495126.18.8e-2548.78uncharacterized protein LOC115710915 [Cannabis sativa][more]
XP_024039545.13.3e-2446.34uncharacterized protein LOC112098147 [Citrus clementina][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10Endonuclease/exonuclease/phosphatasecoord: 1..122
e-value: 2.3E-14
score: 55.7
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 1..121

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy01g007060.1Lcy01g007060.1mRNA