Lcy01g006580 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g006580
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	DUF4283 domain-containing protein
Location	Chr01: 10277126 .. 10277569 (+)
RNA-Seq Expression	Lcy01g006580
Synteny	Lcy01g006580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAACAGGCCCGGGTCCTTGCCAATATCAAAGGGTGGTACAAGGTGGGCAAGTTTCAAGTCAGGTTCTTCCAGTGGAGTGCGGCAAGTTATGAACGGAAATCTTATGGTTCCATCATACGGGGGATGGATAAAAGTTTGGAACCTTCCTCTAGACAAATGGTCTATAGAAACTTTCAAACAGATTGGAGACGTTTGTGGGGGATATCTGGAAACAGCCACTAAAACCTTAACTAGAATGGACATGATGGAGGTAGGGATTAAAGTGAAGAGAAACCACACAGGCTTCATCCCTGCTGAGGTTCATATTCCTTCATCCTCAAATAGATCTGTAAGGGTTGTTATTGACCCATTCTTTATGGAAGATTACAGTATTGGTTATATCGCCGGCATCCATTGGAAAAATTCTGGTAGCCTCGGTTCCAATAGTCGACACATATAA

mRNA sequence

ATGACGAACAGGCCCGGGTCCTTGCCAATATCAAAGGGTGGTACAAGGTGGGCAAGTTTCAAGTCAGGTTCTTCCAGTGGAGTGCGGCAAGTTATGAACGGAAATCTTATGGTTCCATCATACGGGGGATGGATAAAAGTTTGGAACCTTCCTCTAGACAAATGGTCTATAGAAACTTTCAAACAGATTGGAGACGTTTGTGGGGGATATCTGGAAACAGCCACTAAAACCTTAACTAGAATGGACATGATGGAGGTAGGGATTAAAGTGAAGAGAAACCACACAGGCTTCATCCCTGCTGAGGTTCATATTCCTTCATCCTCAAATAGATCTGTAAGGGTTGTTATTGACCCATTCTTTATGGAAGATTACAGTATTGGTTATATCGCCGGCATCCATTGGAAAAATTCTGGTAGCCTCGGTTCCAATAGTCGACACATATAA

Coding sequence (CDS)

ATGACGAACAGGCCCGGGTCCTTGCCAATATCAAAGGGTGGTACAAGGTGGGCAAGTTTCAAGTCAGGTTCTTCCAGTGGAGTGCGGCAAGTTATGAACGGAAATCTTATGGTTCCATCATACGGGGGATGGATAAAAGTTTGGAACCTTCCTCTAGACAAATGGTCTATAGAAACTTTCAAACAGATTGGAGACGTTTGTGGGGGATATCTGGAAACAGCCACTAAAACCTTAACTAGAATGGACATGATGGAGGTAGGGATTAAAGTGAAGAGAAACCACACAGGCTTCATCCCTGCTGAGGTTCATATTCCTTCATCCTCAAATAGATCTGTAAGGGTTGTTATTGACCCATTCTTTATGGAAGATTACAGTATTGGTTATATCGCCGGCATCCATTGGAAAAATTCTGGTAGCCTCGGTTCCAATAGTCGACACATATAA

Protein sequence

MTNRPGSLPISKGGTRWASFKSGSSSGVRQVMNGNLMVPSYGGWIKVWNLPLDKWSIETFKQIGDVCGGYLETATKTLTRMDMMEVGIKVKRNHTGFIPAEVHIPSSSNRSVRVVIDPFFMEDYSIGYIAGIHWKNSGSLGSNSRHI

Homology

[Close]

BLAST of Lcy01g006580 vs. ExPASy TrEMBL
Match: A0A5D3DT94 (Putative amidohydrolase ytcJ OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00450 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 8.2e-15
Identity = 39/97 (40.21%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 37  MVPSYGGWIKVWNLPLDKWSIETFKQIGDVCGGYLETATKTLTRMDMMEVGIKVKRNHTG 96
           MVPSYGGW     LPL  W++ +++QIGD CGG +E +  T+ + D++EV +K++ N+TG
Sbjct: 1   MVPSYGGWTSFKGLPLTAWNMNSYRQIGDACGGLVEVSKSTMRKTDLIEVRLKIRHNYTG 60

Query: 97  FIPAEVHIPSSSNRSVRVVIDPFFMEDYSIGYIAGIH 134
           FIPA+++I  S      +    F  E +     A IH
Sbjct: 61  FIPAQINIKDSKGNIFTIQTVSFTEERWFKERNANIH 97

[Close]

BLAST of Lcy01g006580 vs. ExPASy TrEMBL
Match: A0A5A7TFK7 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00060 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.4e-14
Identity = 39/82 (47.56%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 37  MVPSYGGWIKVWNLPLDKWSIETFKQIGDVCGGYLETATKTLTRMDMMEVGIKVKRNHTG 96
           ++PSYGGWIKV  +PL  W++E+F QIGD CGG++E A +T    D+ E  IK+K N+TG
Sbjct: 281 VIPSYGGWIKVRGVPLHAWNLESFIQIGDACGGFVEVAKETRELTDIFEASIKIKDNYTG 340

Query: 97  FIPAEVHIPSSSNRS--VRVVI 117
           FIPA + +      S  V+V++
Sbjct: 341 FIPAYIKLFDKEEHSFIVQVIV 362

[Close]

BLAST of Lcy01g006580 vs. ExPASy TrEMBL
Match: E5GB30 (DUF4283 domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.4e-14
Identity = 39/81 (48.15%), Postives = 57/81 (70.37%), Query Frame = 0


Query: 38  VPSYGGWIKVWNLPLDKWSIETFKQIGDVCGGYLETATKTLTRMDMMEVGIKVKRNHTGF 97
           VPSYGGWIKV  +PL  W++E+F QIGD CGG++E A +T    D++E  I+VK N++GF
Sbjct: 211 VPSYGGWIKVRAVPLHAWNLESFVQIGDACGGFMEVAKETRELTDLIEASIRVKDNYSGF 270

Query: 98  IPAEVHIPSSSNRS--VRVVI 117
           IPA + +     RS  ++V++
Sbjct: 271 IPAFIKLIDKEERSYIIQVIV 291

[Close]

BLAST of Lcy01g006580 vs. ExPASy TrEMBL
Match: A0A5A7TLE2 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00570 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.8e-14
Identity = 37/75 (49.33%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 37  MVPSYGGWIKVWNLPLDKWSIETFKQIGDVCGGYLETATKTLTRMDMMEVGIKVKRNHTG 96
           ++PSYGGWIKV  +PL  W++E+F QIGD CGG++E A +T    D++E  I+VK N++G
Sbjct: 217 VIPSYGGWIKVRGVPLHAWNLESFIQIGDACGGFMEVAKETRELTDLIEASIRVKDNYSG 276

Query: 97  FIPAEVHIPSSSNRS 112
           FIPA + +     RS
Sbjct: 277 FIPAFIKLFDKEERS 291

[Close]

BLAST of Lcy01g006580 vs. ExPASy TrEMBL
Match: A0A5D3DLP0 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00770 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.1e-14
Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 37  MVPSYGGWIKVWNLPLDKWSIETFKQIGDVCGGYLETATKTLTRMDMMEVGIKVKRNHTG 96
           ++PSYGGWIKV  +PL  W++E+F QIGD CGG++E A +T    D+ E  IK+K N++G
Sbjct: 265 VIPSYGGWIKVRGVPLHAWNLESFIQIGDACGGFVEVAKETRELTDIFEASIKIKDNYSG 324

Query: 97  FIPAEVHIPSSSNRS--VRVVI 117
           FIPA + +      S  V+V++
Sbjct: 325 FIPAYIKLFDKEEHSFIVQVIV 346

[Close]

BLAST of Lcy01g006580 vs. NCBI nr
Match: QWT43305.1 (kinesin-related protein KIN7C [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 122.9 bits (307), Expect = 2.4e-24
Identity = 59/122 (48.36%), Postives = 78/122 (63.93%), Query Frame = 0


Query: 38  VPSYGGWIKVWNLPLDKWSIETFKQIGDVCGGYLETATKTLTRMDMMEVGIKVKRNHTGF 97
           VPSYG WIK+ NL +D+WS +TFK IG++CGGY+ET+ KTL RMDMME  +KVK N  GF
Sbjct: 240 VPSYGSWIKIRNLLIDQWSYDTFKLIGELCGGYIETSKKTLARMDMMEASLKVKMNKNGF 299

Query: 98  IPAEVHIPSSSNRSVRVVIDPFFMEDYSIGYIAGI------------HWKNSGSLGSNSR 148
           +PA + + S+S  S+ V +DPFF  D  IGYIA +            HW+   S  +  R
Sbjct: 300 LPAIIQLLSTSAFSMAVQMDPFFDLDLHIGYIAAVMGPFHRFLQHHFHWRRRWSCFARGR 359

[Close]

BLAST of Lcy01g006580 vs. NCBI nr
Match: KAA0047508.1 (putative amidohydrolase ytcJ [Cucumis melo var. makuwa] >TYK26480.1 putative amidohydrolase ytcJ [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 1.7e-14
Identity = 39/97 (40.21%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 37  MVPSYGGWIKVWNLPLDKWSIETFKQIGDVCGGYLETATKTLTRMDMMEVGIKVKRNHTG 96
           MVPSYGGW     LPL  W++ +++QIGD CGG +E +  T+ + D++EV +K++ N+TG
Sbjct: 1   MVPSYGGWTSFKGLPLTAWNMNSYRQIGDACGGLVEVSKSTMRKTDLIEVRLKIRHNYTG 60

Query: 97  FIPAEVHIPSSSNRSVRVVIDPFFMEDYSIGYIAGIH 134
           FIPA+++I  S      +    F  E +     A IH
Sbjct: 61  FIPAQINIKDSKGNIFTIQTVSFTEERWFKERNANIH 97

[Close]

BLAST of Lcy01g006580 vs. NCBI nr
Match: ADN33672.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 89.4 bits (220), Expect = 2.9e-14
Identity = 39/81 (48.15%), Postives = 57/81 (70.37%), Query Frame = 0


Query: 38  VPSYGGWIKVWNLPLDKWSIETFKQIGDVCGGYLETATKTLTRMDMMEVGIKVKRNHTGF 97
           VPSYGGWIKV  +PL  W++E+F QIGD CGG++E A +T    D++E  I+VK N++GF
Sbjct: 211 VPSYGGWIKVRAVPLHAWNLESFVQIGDACGGFMEVAKETRELTDLIEASIRVKDNYSGF 270

Query: 98  IPAEVHIPSSSNRS--VRVVI 117
           IPA + +     RS  ++V++
Sbjct: 271 IPAFIKLIDKEERSYIIQVIV 291

[Close]

BLAST of Lcy01g006580 vs. NCBI nr
Match: KAA0040039.1 (hypothetical protein E6C27_scaffold366G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 2.9e-14
Identity = 39/82 (47.56%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 37  MVPSYGGWIKVWNLPLDKWSIETFKQIGDVCGGYLETATKTLTRMDMMEVGIKVKRNHTG 96
           ++PSYGGWIKV  +PL  W++E+F QIGD CGG++E A +T    D+ E  IK+K N+TG
Sbjct: 281 VIPSYGGWIKVRGVPLHAWNLESFIQIGDACGGFVEVAKETRELTDIFEASIKIKDNYTG 340

Query: 97  FIPAEVHIPSSSNRS--VRVVI 117
           FIPA + +      S  V+V++
Sbjct: 341 FIPAYIKLFDKEEHSFIVQVIV 362

[Close]

BLAST of Lcy01g006580 vs. NCBI nr
Match: KAA0044333.1 (hypothetical protein E6C27_scaffold46G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 3.8e-14
Identity = 37/75 (49.33%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 37  MVPSYGGWIKVWNLPLDKWSIETFKQIGDVCGGYLETATKTLTRMDMMEVGIKVKRNHTG 96
           ++PSYGGWIKV  +PL  W++E+F QIGD CGG++E A +T    D++E  I+VK N++G
Sbjct: 217 VIPSYGGWIKVRGVPLHAWNLESFIQIGDACGGFMEVAKETRELTDLIEASIRVKDNYSG 276

Query: 97  FIPAEVHIPSSSNRS 112
           FIPA + +     RS
Sbjct: 277 FIPAFIKLFDKEERS 291

The following BLAST results are available for this feature:

BLAST of Lcy01g006580 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy01g006580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DT94	8.2e-15	40.21	Putative amidohydrolase ytcJ OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7TFK7	1.4e-14	47.56	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
E5GB30	1.4e-14	48.15	DUF4283 domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=...	[more]
A0A5A7TLE2	1.8e-14	49.33	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3DLP0	4.1e-14	46.34	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Lcy01g006580 vs. NCBI nr


Match Name	E-value	Identity	Description
QWT43305.1	2.4e-24	48.36	kinesin-related protein KIN7C [Citrullus lanatus subsp. vulgaris]	[more]
KAA0047508.1	1.7e-14	40.21	putative amidohydrolase ytcJ [Cucumis melo var. makuwa] >TYK26480.1 putative ami...	[more]
ADN33672.1	2.9e-14	48.15	hypothetical protein [Cucumis melo subsp. melo]	[more]
KAA0040039.1	2.9e-14	47.56	hypothetical protein E6C27_scaffold366G00060 [Cucumis melo var. makuwa]	[more]
KAA0044333.1	3.8e-14	49.33	hypothetical protein E6C27_scaffold46G00570 [Cucumis melo var. makuwa]	[more]

BLAST of Lcy01g006580 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 44..83 e-value: 2.7E-8 score: 33.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g006580.1	Lcy01g006580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding
molecular_function	GO:0016491	oxidoreductase activity