Lcy01g006480 (gene) Sponge gourd (P93075) v1

Overview
NameLcy01g006480
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr01: 9962860 .. 9964651 (+)
RNA-Seq ExpressionLcy01g006480
SyntenyLcy01g006480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTGGTTGGATGCTGCATGGCGGAAGGAGACGCTGGTTACTAGTCTGGGGTGGTCATTGAGAGAGCAGGATGGAACTATATGGGCTGAAAATTCCAAGAATGGGGGATTTAGCTTAAATAGTCTACATGCAGAGGGTAAGGCCCTGCTATGGGGTTTGGAATGTGCGAGGGAGATTGGAATTCAAGAGTTGCAGTTGAAATCCGATGCTTTGCGAATGGTGAATATAGTCAACGGAAAGGAGAAATGTCCAGTGGACTTTGAACCTGTTTTTGATTGTATTCAACACTGTCTCGATGCTTTTAATTCTTGCAGTCTGATATTTGTGAGGAGAGAGTTCAATGAGAGAGCTCATATGTTGGCCAAGAATGGTCTGTGTATTTAATTCTCTTTCGAATAAAGCTTTCGCTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAACATTACAATCCAACTTGGGTATAAACATACCCAAGATTTTTTAACTTTCAATGCTCTAGTTTATTTTTCCTTTATTTTACGAGTGATAATATATGTATACCTATCAAATTAACATATAAAGTATTTTAAACTTGATTAATAAAGTCTATTTTGACCCATTATATCATCATTTTATAAATTATTTTAATATAATAAAAACTTAATTAAGAAAAAAAGGGAAATAATTAATTTAAAATTTTACCACTAAACTTTTCACGTGATATCAATTTATATCCTATACTCTCAATTTCAACAAATTGAACCTTAGACTTTGTTAAATGTTGCAATTTCTACCATCTATTCAATTTTGGTTAATTCACTCATTCATTTTAACAGGGGGTTAAAGTCTTCGAAACTAATGAATTTCAATAATATCAAGTATTGGACAAATTTAAATTTGATTATTGCACAAATTAATCATCCAATAATAACTTTGTAAAAACTCACAAATTTGAAGAAAAATTTACCTCTAATGATTTTTTCTTTGTAATTTTATCAATTTTTATGTCATACATTGAAAGCATATGTGGAAATATCTTTTTTATGAATTTTCAAACAAATATTTATTAGAGGATAAAAATTGCAACACGTTTTTAAGTTTAAGGTTAAGAGATTGCAACCTTTATCTAAATTTATAGTGCAGTTTGATAAAATTGAAAGTTTATGATAAAAATAGATACAATTTGACACGAAATTGGTTAAAAAAAAAAAAAAGAAGAAACTATACATAAAAAGAAGAAATTGAAGCAAAACAATAAACATCAGGCATTGTATATTGGACCTTTTTTTTTATTATTAATATCATAATTTTTAGAACTTACTATTGAAATAGATTTATTTTGAAACTTATTATAAAAATAGTGTAGCTTTAAATTATGCTTGCAAGAGACGGCCTGTTTAGAGGAGATGGGTGGGTTAAATTTCTGTGATATGGAAAGCTTTAACAAAGCTTTACTGGCGAAACAGGTGTGACATCTATTTATAAATCCAGATTAATTAGTCTCAAAGGTAATAAAAGGGCGGTATGCGAATCAAAACTCCCTTTTACATGCACCAATTAAAGCCAATTGTTCTGTTTTCTAGTGGGGATTTGTATGGGCAAGAGATCTTTTACAAAGTGGCATGAGAAAACAGATTGGAAATGGTAAATCTACATATTTTCTCAAATATCCTTGGACGCCCAAGGTGAGCACTTTCAAGCCAATCCCAATTCTTGAGATTGATTTACAGGAGAATGTTCTAGTTGCTGATTTCATTACGCCAACAATGGAATGGAATGTGAGCAAATCTATACCATATTGA

mRNA sequence

ATGATGTGGTTGGATGCTGCATGGCGGAAGGAGACGCTGGTTACTAGTCTGGGGTGGTCATTGAGAGAGCAGGATGGAACTATATGGGCTGAAAATTCCAAGAATGGGGGATTTAGCTTAAATAGTCTACATGCAGAGGGTAAGGCCCTGCTATGGGGTTTGGAATGTGCGAGGGAGATTGGAATTCAAGAGTTGCAGTTGAAATCCGATGCTTTGCGAATGTGGGGATTTGTATGGGCAAGAGATCTTTTACAAAGTGGCATGAGAAAACAGATTGGAAATGGTAAATCTACATATTTTCTCAAATATCCTTGGACGCCCAAGGTGAGCACTTTCAAGCCAATCCCAATTCTTGAGATTGATTTACAGGAGAATGTTCTAGTTGCTGATTTCATTACGCCAACAATGGAATGGAATGTGAGCAAATCTATACCATATTGA

Coding sequence (CDS)

ATGATGTGGTTGGATGCTGCATGGCGGAAGGAGACGCTGGTTACTAGTCTGGGGTGGTCATTGAGAGAGCAGGATGGAACTATATGGGCTGAAAATTCCAAGAATGGGGGATTTAGCTTAAATAGTCTACATGCAGAGGGTAAGGCCCTGCTATGGGGTTTGGAATGTGCGAGGGAGATTGGAATTCAAGAGTTGCAGTTGAAATCCGATGCTTTGCGAATGTGGGGATTTGTATGGGCAAGAGATCTTTTACAAAGTGGCATGAGAAAACAGATTGGAAATGGTAAATCTACATATTTTCTCAAATATCCTTGGACGCCCAAGGTGAGCACTTTCAAGCCAATCCCAATTCTTGAGATTGATTTACAGGAGAATGTTCTAGTTGCTGATTTCATTACGCCAACAATGGAATGGAATGTGAGCAAATCTATACCATATTGA

Protein sequence

MMWLDAAWRKETLVTSLGWSLREQDGTIWAENSKNGGFSLNSLHAEGKALLWGLECAREIGIQELQLKSDALRMWGFVWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLVADFITPTMEWNVSKSIPY
Homology
BLAST of Lcy01g006480 vs. ExPASy TrEMBL
Match: A0A803Q8J4 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 6.9e-06
Identity = 31/74 (41.89%), Postives = 40/74 (54.05%), Query Frame = 0

Query: 69   SDALRMWGFVWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLV 128
            + +L   G  W R+LL+ G+RK++GNG S      PW P    F PI         N +V
Sbjct: 1349 ASSLTWQGICWGRELLKKGIRKKVGNGFSISCANDPWIPGNLIFTPI---FYSGNPNSVV 1408

Query: 129  ADFITPTMEWNVSK 143
            AD+ITP  EWN SK
Sbjct: 1409 ADYITPDREWNFSK 1419

BLAST of Lcy01g006480 vs. ExPASy TrEMBL
Match: A0A803NM27 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 6.9e-06
Identity = 32/72 (44.44%), Postives = 38/72 (52.78%), Query Frame = 0

Query: 71   ALRMWGFVWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLVAD 130
            +L   GF W R+LL+ G+R Q+GNG        PW P  S F PI            VAD
Sbjct: 1327 SLTWQGFCWGRELLKKGLRLQVGNGFDIACATDPWIPGNSIFTPIYFTGAPTN---TVAD 1386

Query: 131  FITPTMEWNVSK 143
            +ITP  EWNVSK
Sbjct: 1387 YITPEKEWNVSK 1395

BLAST of Lcy01g006480 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-04
Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 0

Query: 76   GFVWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLVADFITPT 135
            GF+W RDLL  G+R ++GNG +      PW P+ +TFKP+      L  +  VA FIT  
Sbjct: 1003 GFLWGRDLLVKGLRLRVGNGSTIKAFSDPWLPRPTTFKPLRFNNGAL--DTTVASFITAD 1062

Query: 136  MEWNVS 142
              W+V+
Sbjct: 1063 GNWDVT 1066

BLAST of Lcy01g006480 vs. ExPASy TrEMBL
Match: A0A5P1EL44 (Uncharacterized protein OS=Asparagus officinalis OX=4686 GN=A4U43_C06F7380 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.9e-04
Identity = 40/134 (29.85%), Postives = 58/134 (43.28%), Query Frame = 0

Query: 29  WAE---NSKNGGFSLNSLHAEGKALL----WGLECAREIGIQEL--------------QL 88
           WAE   N  +GG     L    +ALL    W +  +    ++ L              ++
Sbjct: 534 WAELCRNKWDGGLGFRDLELFNQALLAKTYWRIMHSAHSLVRRLLQAKYLPNQEWLEGRV 593

Query: 89  KSDALRMW-GFVWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENV 141
           K  A  MW   VW +++LQ GMR ++G+G         W P+  TF+ I      + EN 
Sbjct: 594 KKGASLMWRSLVWGKEVLQMGMRWRVGDGTQIRLKVDKWIPQPHTFRVIS--HNAIPENA 653

BLAST of Lcy01g006480 vs. ExPASy TrEMBL
Match: A0A6P5RF81 (uncharacterized protein LOC110745747 isoform X1 OS=Prunus avium OX=42229 GN=LOC110745747 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.8e-04
Identity = 26/63 (41.27%), Postives = 37/63 (58.73%), Query Frame = 0

Query: 78  VWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLVADFITPTME 137
           +W R+LL SG+RK IG+G+ T      W P  ++F+PI    +D  +   V+DFI P   
Sbjct: 33  IWGRELLLSGLRKGIGDGQETLVYGDAWIPSPNSFRPISPQVLD--QETKVSDFIFPVGN 92

Query: 138 WNV 141
           WNV
Sbjct: 93  WNV 93

BLAST of Lcy01g006480 vs. NCBI nr
Match: XP_030483228.1 (uncharacterized protein LOC115699823 [Cannabis sativa])

HSP 1 Score: 61.2 bits (147), Expect = 8.4e-06
Identity = 35/118 (29.66%), Postives = 55/118 (46.61%), Query Frame = 0

Query: 29  WAENSKNGGFSLNSLHAEGKALL----WGLECAREIGIQELQLKSDALRMWGFVWARDLL 88
           + ++   GG    +     +ALL    W ++ +R   +      + +L   G  W R+LL
Sbjct: 694 FCKSKMEGGLGFRNFIHFKQALLAKQAWRVDISRNDFLSAATCGASSLTWQGIYWGRELL 753

Query: 89  QSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLVADFITPTMEWNVSK 143
           + G+R ++GNG        PW P  S F P   +      N  VA++ITP  EWN+SK
Sbjct: 754 KKGIRMKVGNGLGITCATDPWIPGKSIFTP---MFYTGNPNSAVAEYITPEREWNLSK 808

BLAST of Lcy01g006480 vs. NCBI nr
Match: XP_030509050.1 (uncharacterized protein LOC115723712 [Cannabis sativa])

HSP 1 Score: 57.8 bits (138), Expect = 9.3e-05
Identity = 28/65 (43.08%), Postives = 39/65 (60.00%), Query Frame = 0

Query: 78  VWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLVADFITPTME 137
           VW ++LL  G+R +IG+G     +  PW P  S FKP+  L  D   +V VADFIT + +
Sbjct: 925 VWGKELLLKGLRWRIGSGADVNCVSQPWIPGPSNFKPLLFLSPD--RDVKVADFITHSRQ 984

Query: 138 WNVSK 143
           W+V K
Sbjct: 985 WDVPK 987

BLAST of Lcy01g006480 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 56.2 bits (134), Expect = 2.7e-04
Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 0

Query: 76   GFVWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLVADFITPT 135
            GF+W RDLL  G+R ++GNG +      PW P+ +TFKP+      L  +  VA FIT  
Sbjct: 1003 GFLWGRDLLVKGLRLRVGNGSTIKAFSDPWLPRPTTFKPLRFNNGAL--DTTVASFITAD 1062

Query: 136  MEWNVS 142
              W+V+
Sbjct: 1063 GNWDVT 1066

BLAST of Lcy01g006480 vs. NCBI nr
Match: ONK66393.1 (uncharacterized protein A4U43_C06F7380 [Asparagus officinalis])

HSP 1 Score: 55.1 bits (131), Expect = 6.0e-04
Identity = 40/134 (29.85%), Postives = 58/134 (43.28%), Query Frame = 0

Query: 29  WAE---NSKNGGFSLNSLHAEGKALL----WGLECAREIGIQEL--------------QL 88
           WAE   N  +GG     L    +ALL    W +  +    ++ L              ++
Sbjct: 534 WAELCRNKWDGGLGFRDLELFNQALLAKTYWRIMHSAHSLVRRLLQAKYLPNQEWLEGRV 593

Query: 89  KSDALRMW-GFVWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENV 141
           K  A  MW   VW +++LQ GMR ++G+G         W P+  TF+ I      + EN 
Sbjct: 594 KKGASLMWRSLVWGKEVLQMGMRWRVGDGTQIRLKVDKWIPQPHTFRVIS--HNAIPENA 653

BLAST of Lcy01g006480 vs. NCBI nr
Match: XP_021801569.1 (uncharacterized protein LOC110745747 isoform X1 [Prunus avium])

HSP 1 Score: 54.7 bits (130), Expect = 7.8e-04
Identity = 26/63 (41.27%), Postives = 37/63 (58.73%), Query Frame = 0

Query: 78  VWARDLLQSGMRKQIGNGKSTYFLKYPWTPKVSTFKPIPILEIDLQENVLVADFITPTME 137
           +W R+LL SG+RK IG+G+ T      W P  ++F+PI    +D  +   V+DFI P   
Sbjct: 33  IWGRELLLSGLRKGIGDGQETLVYGDAWIPSPNSFRPISPQVLD--QETKVSDFIFPVGN 92

Query: 138 WNV 141
           WNV
Sbjct: 93  WNV 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A803Q8J46.9e-0641.89Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803NM276.9e-0644.44Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A6J1DX301.3e-0440.91uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A5P1EL442.9e-0429.85Uncharacterized protein OS=Asparagus officinalis OX=4686 GN=A4U43_C06F7380 PE=4 ... [more]
A0A6P5RF813.8e-0441.27uncharacterized protein LOC110745747 isoform X1 OS=Prunus avium OX=42229 GN=LOC1... [more]
Match NameE-valueIdentityDescription
XP_030483228.18.4e-0629.66uncharacterized protein LOC115699823 [Cannabis sativa][more]
XP_030509050.19.3e-0543.08uncharacterized protein LOC115723712 [Cannabis sativa][more]
XP_022158377.12.7e-0440.91uncharacterized protein LOC111024874 [Momordica charantia][more]
ONK66393.16.0e-0429.85uncharacterized protein A4U43_C06F7380 [Asparagus officinalis][more]
XP_021801569.17.8e-0441.27uncharacterized protein LOC110745747 isoform X1 [Prunus avium][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..95
e-value: 1.0E-5
score: 27.6
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 5..72
e-value: 1.6E-9
score: 37.6

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy01g006480.1Lcy01g006480.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity