Lcy01g006210 (gene) Sponge gourd (P93075) v1

Overview
NameLcy01g006210
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionZinc CCHC-type-like protein
LocationChr01: 9065167 .. 9066459 (-)
RNA-Seq ExpressionLcy01g006210
SyntenyLcy01g006210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATTGATGAATTGATACACGAATGGAAAAAGTTCAAGTTGATAGAAGAAGAGAAAGAAGCCTGGATTACCTTAGAGCCAGAGGAAGTAACAAAGATTGAGAATTACATAGACCACAATCTGGTGGGAAAAGTCCTGACAAACAGAAACATATCCAAGTTAGCTATCAAGAATGCAATGTTGGGAGCATGGAAAACAAGAAAGGATTTTCACGTAGAGACAGTCAGCAAAAATACATTTTCATTCAGCTTTGAAAGTAAAGATGATAAAGAATGGATAAACAACAATGGTCCTTGGTTATTCGATAGAAATCTTGTTGTTCTTGAAGCCCCAACAAAAAATATAAGGATTAACGAACTGGAGTTCAACAAAACAGACTTATGGCTGAGAATTATCAACCTACCAGTAGGTTTCCGGAATGAGTTCATAGCAAGGAAGATAGGTAACATATTGGGAACTTTTCAAGACTGGGACAGCGACAAAAATAGCTCAGCCTGGGGCAATAGTCTTCGAATCAGAGTAAGACTAGACATATCCAAACCTTTGCGAAGAGGCTTTATGCTCCGAACGAATGGTATTTGTAAAGACTGTTGGATTTCAATTAGGTATGAAAGGCTTCCAGATCTGTGTTTTAACTGCGGAAAGATAGGACATGTTGCCAAAGATTGCTATGGAGATAAAAATGCTGAAAGGACGCAAGAAAGGAATTTCGAATATGGTTCTTGGATGAAGTTTCAAGGCTTCGCCTCTTATTTCAAGGAAAACTATGCAAACAAGAGCAATGGAGATGAAACTGAGGAAGCCCAGAAGGGAGATGAAAATACTGAAGGTGAAAAGAGACAATGGGAGGGACTAGATGTAGATCTGAACCAAGCAAGTCCAATAAATGAAGAAGTTGATCTATCATTCAGTCAGGAGAAATGGAAAGAATTATACTCCGATGTATTACCAAGAAAAGAAAGGATTGAGGAAGAAATAAGAAGGAAAGCAGCCCAGTTGAGAGAAAGTATCAAGGAAATTGAACCCGTTGAGAACAATGTTGATCCGAGTAATGAAGCTTCTGGGAGCGCTAGTTCATCAAAGAAAAGAATGAGTTGGAAAAGGAAAAAGTATATGGAATTAAGACCTACAAGCTCAAAGGATAGTCTGGGATCTCAAAAAAGGAAGGCTGAGGAAATCAATGACAATGGAGGGAAAAGAAGGAAAGAAGGAGCAGATGATGAGATGGAATTGGGACCTTTTTCTGAAAATTTGGCAGTGGCTGGATACCAGCCCTGCCCTGATCAATGA

mRNA sequence

ATGGAGATTGATGAATTGATACACGAATGGAAAAAGTTCAAGTTGATAGAAGAAGAGAAAGAAGCCTGGATTACCTTAGAGCCAGAGGAAGTAACAAAGATTGAGAATTACATAGACCACAATCTGGTGGGAAAAGTCCTGACAAACAGAAACATATCCAAGTTAGCTATCAAGAATGCAATGTTGGGAGCATGGAAAACAAGAAAGGATTTTCACGTAGAGACAGTCAGCAAAAATACATTTTCATTCAGCTTTGAAAGTAAAGATGATAAAGAATGGATAAACAACAATGGTCCTTGGTTATTCGATAGAAATCTTGTTGTTCTTGAAGCCCCAACAAAAAATATAAGGATTAACGAACTGGAGTTCAACAAAACAGACTTATGGCTGAGAATTATCAACCTACCAGTAGGTTTCCGGAATGAGTTCATAGCAAGGAAGATAGGTAACATATTGGGAACTTTTCAAGACTGGGACAGCGACAAAAATAGCTCAGCCTGGGGCAATAGTCTTCGAATCAGAGTAAGACTAGACATATCCAAACCTTTGCGAAGAGGCTTTATGCTCCGAACGAATGGTATTTGTAAAGACTGTTGGATTTCAATTAGGTATGAAAGGCTTCCAGATCTGTGTTTTAACTGCGGAAAGATAGGACATGTTGCCAAAGATTGCTATGGAGATAAAAATGCTGAAAGGACGCAAGAAAGGAATTTCGAATATGGTTCTTGGATGAAGTTTCAAGGCTTCGCCTCTTATTTCAAGGAAAACTATGCAAACAAGAGCAATGGAGATGAAACTGAGGAAGCCCAGAAGGGAGATGAAAATACTGAAGGTGAAAAGAGACAATGGGAGGGACTAGATGTAGATCTGAACCAAGCAAGTCCAATAAATGAAGAAGTTGATCTATCATTCAGTCAGGAGAAATGGAAAGAATTATACTCCGATGTATTACCAAGAAAAGAAAGGATTGAGGAAGAAATAAGAAGGAAAGCAGCCCAGTTGAGAGAAAGTATCAAGGAAATTGAACCCGTTGAGAACAATGTTGATCCGAGTAATGAAGCTTCTGGGAGCGCTAGTTCATCAAAGAAAAGAATGAGTTGGAAAAGGAAAAAGTATATGGAATTAAGACCTACAAGCTCAAAGGATAGTCTGGGATCTCAAAAAAGGAAGGCTGAGGAAATCAATGACAATGGAGGGAAAAGAAGGAAAGAAGGAGCAGATGATGAGATGGAATTGGGACCTTTTTCTGAAAATTTGGCAGTGGCTGGATACCAGCCCTGCCCTGATCAATGA

Coding sequence (CDS)

ATGGAGATTGATGAATTGATACACGAATGGAAAAAGTTCAAGTTGATAGAAGAAGAGAAAGAAGCCTGGATTACCTTAGAGCCAGAGGAAGTAACAAAGATTGAGAATTACATAGACCACAATCTGGTGGGAAAAGTCCTGACAAACAGAAACATATCCAAGTTAGCTATCAAGAATGCAATGTTGGGAGCATGGAAAACAAGAAAGGATTTTCACGTAGAGACAGTCAGCAAAAATACATTTTCATTCAGCTTTGAAAGTAAAGATGATAAAGAATGGATAAACAACAATGGTCCTTGGTTATTCGATAGAAATCTTGTTGTTCTTGAAGCCCCAACAAAAAATATAAGGATTAACGAACTGGAGTTCAACAAAACAGACTTATGGCTGAGAATTATCAACCTACCAGTAGGTTTCCGGAATGAGTTCATAGCAAGGAAGATAGGTAACATATTGGGAACTTTTCAAGACTGGGACAGCGACAAAAATAGCTCAGCCTGGGGCAATAGTCTTCGAATCAGAGTAAGACTAGACATATCCAAACCTTTGCGAAGAGGCTTTATGCTCCGAACGAATGGTATTTGTAAAGACTGTTGGATTTCAATTAGGTATGAAAGGCTTCCAGATCTGTGTTTTAACTGCGGAAAGATAGGACATGTTGCCAAAGATTGCTATGGAGATAAAAATGCTGAAAGGACGCAAGAAAGGAATTTCGAATATGGTTCTTGGATGAAGTTTCAAGGCTTCGCCTCTTATTTCAAGGAAAACTATGCAAACAAGAGCAATGGAGATGAAACTGAGGAAGCCCAGAAGGGAGATGAAAATACTGAAGGTGAAAAGAGACAATGGGAGGGACTAGATGTAGATCTGAACCAAGCAAGTCCAATAAATGAAGAAGTTGATCTATCATTCAGTCAGGAGAAATGGAAAGAATTATACTCCGATGTATTACCAAGAAAAGAAAGGATTGAGGAAGAAATAAGAAGGAAAGCAGCCCAGTTGAGAGAAAGTATCAAGGAAATTGAACCCGTTGAGAACAATGTTGATCCGAGTAATGAAGCTTCTGGGAGCGCTAGTTCATCAAAGAAAAGAATGAGTTGGAAAAGGAAAAAGTATATGGAATTAAGACCTACAAGCTCAAAGGATAGTCTGGGATCTCAAAAAAGGAAGGCTGAGGAAATCAATGACAATGGAGGGAAAAGAAGGAAAGAAGGAGCAGATGATGAGATGGAATTGGGACCTTTTTCTGAAAATTTGGCAGTGGCTGGATACCAGCCCTGCCCTGATCAATGA

Protein sequence

MEIDELIHEWKKFKLIEEEKEAWITLEPEEVTKIENYIDHNLVGKVLTNRNISKLAIKNAMLGAWKTRKDFHVETVSKNTFSFSFESKDDKEWINNNGPWLFDRNLVVLEAPTKNIRINELEFNKTDLWLRIINLPVGFRNEFIARKIGNILGTFQDWDSDKNSSAWGNSLRIRVRLDISKPLRRGFMLRTNGICKDCWISIRYERLPDLCFNCGKIGHVAKDCYGDKNAERTQERNFEYGSWMKFQGFASYFKENYANKSNGDETEEAQKGDENTEGEKRQWEGLDVDLNQASPINEEVDLSFSQEKWKELYSDVLPRKERIEEEIRRKAAQLRESIKEIEPVENNVDPSNEASGSASSSKKRMSWKRKKYMELRPTSSKDSLGSQKRKAEEINDNGGKRRKEGADDEMELGPFSENLAVAGYQPCPDQ
Homology
BLAST of Lcy01g006210 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 4.3e-48
Identity = 110/302 (36.42%), Postives = 168/302 (55.63%), Query Frame = 0

Query: 1   MEIDELIHEWKKFKLIEEEKEAWITLEPEEVTKIENYIDHNLVGKVLTNRNISKLAIKNA 60
           M+ + L+ +W+KFKL  EE E  + ++ + V   E  + ++LVGK+L  R IS   +   
Sbjct: 1   MDHENLLADWQKFKLTSEEDEIAMDVDVDAVKMAEQGLAYSLVGKLLAKRIISADVLSRV 60

Query: 61  MLGAWKTRKDFHVETVSKNTFSFSFESKDDKEWINNNGPWLFDRNLVVLEAPTKNIRINE 120
           +L AWK      VE++ KN F F F  + D   +   GPW FD+ L+VL+ P  +  I+E
Sbjct: 61  LLLAWKVEHQLTVESIGKNLFLFHFCRECDMNRVMKTGPWFFDKALIVLQKPCSSKNISE 120

Query: 121 LEFNKTDLWLRIINLPVGFRNEFIARKIGNILGTFQDWDSDKNSSAWGNSLRIRVRLDIS 180
           LEFN+   W+ + +LP+ + N+ +A ++GN +G F D D ++   +WG SLRIRV +DI+
Sbjct: 121 LEFNRVAFWIHLFDLPMSWLNKTMAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDIT 180

Query: 181 KPLRRGFMLRTNGICKDCWISIRYERLPDLCFNCGKIGHVAKDCYGDKNAERTQER-NFE 240
           KPLRRG  +  +G    CWI I+YERLPD C+ CG IGH + DC     A +   R   E
Sbjct: 181 KPLRRGIKINIDGPMGGCWIPIQYERLPDFCYFCGVIGHSSHDCDARYLAAQDDSRATSE 240

Query: 241 YGSWMKFQGFASYFKENYANKSNGDE-------TEEAQKGDENTEGEKRQWEGLDVDLNQ 295
           YG W++F G  +  ++    KS   E           ++G E T+ +  +    D   +Q
Sbjct: 241 YGPWLRFVGSKAGAQKGRKGKSPAREDSCGSSSMNSKERGVEETKQQLSEQTNQDGFQSQ 300

BLAST of Lcy01g006210 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.2e-44
Identity = 89/249 (35.74%), Postives = 143/249 (57.43%), Query Frame = 0

Query: 1   MEIDELIHEWKKFKLIEEEKEAWITLEPEEVTKIENYIDHNLVGKVLTNRNISKLAIKNA 60
           M    L+ EWK FKL  EE +  + ++   +      ++ +L+ K+L+ R+IS   +KN 
Sbjct: 1   MAASNLLEEWKNFKLTSEEDKIAVDIDSSALEGTGKCLELSLICKLLSKRSISCTVLKNT 60

Query: 61  MLGAWKTR-KDFHVETVSKNTFSFSFESKDDKEWINNNGPWLFDRNLVVLEAPTKNIRIN 120
           +  AWK   K F V+ +  N F F+F    D+  I   GPW FDR L++++ P    +  
Sbjct: 61  LKIAWKLDCKAFSVDIIGFNIFLFNFNRSSDRNRILRMGPWTFDRALIIIDNPVSLTKPL 120

Query: 121 ELEFNKTDLWLRIINLPVGFRNEFIARKIGNILGTFQDWDSDKNSSAWGNSLRIRVRLDI 180
           +++F    LW+   +L +   N+ +A ++GN +G F+D +S+ N+  WG+ LR+RVR D+
Sbjct: 121 DMDFRNVSLWVHFFDLSLACMNKTMATRLGNAIGLFEDVESNANNFCWGSCLRVRVRFDV 180

Query: 181 SKPLRRGFMLRTNGICKDCWISIRYERLPDLCFNCGKIGHVAKDCYGDKNAERTQERNFE 240
            KPL RG  L  +G    CWI I+YERLPD  ++CG++ H+ KDC        +  +N +
Sbjct: 181 MKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDC--SDCCVDSVSKNLQ 240

Query: 241 YGSWMKFQG 249
           YG W++FQG
Sbjct: 241 YGPWLRFQG 247

BLAST of Lcy01g006210 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 9.4e-43
Identity = 95/245 (38.78%), Postives = 139/245 (56.73%), Query Frame = 0

Query: 5   ELIHEWKKFKLIEEEKEAWITLEPEEVTKIENYIDHNLVGKVLTNRNISKLAIKNAMLGA 64
           +L+ EWK FKL  EE+E  I ++        + ++  LVGK+   R I+   +KN M  A
Sbjct: 5   DLLEEWKNFKLTSEEEETAIDVDASAPATTGSRLEQILVGKLFIKRPITCPVMKNTMRTA 64

Query: 65  WKTRKD-FHVETVSKNTFSFSFESKDDKEWINNNGPWLFDRNLVVLEAPTKNIRINELEF 124
           WK   + F V+++  N F FSF    D+  I  +GPW FDR LV++  P   I  +EL+F
Sbjct: 65  WKLENNAFEVQSLGYNLFLFSFARALDRNKIYKSGPWTFDRTLVLINKPVALIPPSELDF 124

Query: 125 NKTDLWLRIINLPVGFRNEFIARKIGNILGTFQDWDSDKNSSAWGNSLRIRVRLDISKPL 184
            K  +W+R  +LP+G     +A ++GN LG F++ D D  +  WG++LR+RV LDISKPL
Sbjct: 125 TKLPIWVRFFDLPLGCITRDMAIRLGNALGGFEEADCDDLNPDWGSNLRVRVMLDISKPL 184

Query: 185 RRGFMLRTNGICKDCWISIRYERLPDLCFNCGKIGHVAKDCYGDKNAERTQERNFEYGSW 244
           RRG  L  +G     WI I+YERLPD C++CG                 +  +  +YGSW
Sbjct: 185 RRGIKLNLDGPIGGAWIPIQYERLPDFCYHCGL---------------SSSRKKHQYGSW 234

Query: 245 MKFQG 249
           +++QG
Sbjct: 245 LRYQG 234

BLAST of Lcy01g006210 vs. ExPASy TrEMBL
Match: A0A2Z6NZV1 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_140560 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.8e-38
Identity = 91/280 (32.50%), Postives = 156/280 (55.71%), Query Frame = 0

Query: 18  EEKEAWITLEPEEVTKIENYIDHNLVGKVLTNRNISKLAIKNAMLGAWKTRKDFHVETVS 77
           E++E  IT+E EE+ + E      LVGK+ T    +  A K  +  AW+ +    V+ + 
Sbjct: 12  EDEEDCITVEAEEICEEEETFKRTLVGKLWTENPYNVRAFKQTIAQAWRLKNSIEVQDLE 71

Query: 78  KNTFSFSFESKDDKEWINNNGPWLFDRNLVVLEAPTKNIRINELEFNKTDLWLRIINLPV 137
           +N F F F +K D + +  NGPW FDRNL++L   +   + ++L+ +  + W+R+ +LP 
Sbjct: 72  ENLFLFRFTTKKDADTVLRNGPWSFDRNLLILHRVSGEEQPSDLDMHNVNFWVRVYDLPF 131

Query: 138 GFRNEFIARKIGNILGTFQDWDSDKNSSAWGNSLRIRVRLDISKPLRRGFMLRTNGICKD 197
             R+E +A+K+GNI+G F++ D  K+++  G  LR++  LD+ KPL+RG  ++     K+
Sbjct: 132 KLRSEAMAKKLGNIMGNFEEVD-PKDANRTGRFLRLKASLDLRKPLKRGTKIKFQD--KN 191

Query: 198 CWISIRYERLPDLCFNCGKIGHVAKDC-----YGDKNAERTQERNFEYGSWMKFQGFASY 257
            W+  +YERLP+ CF CGKIGH  K+C       + N     E++  YG W++       
Sbjct: 192 MWVDFKYERLPNFCFACGKIGHQMKECEDVEDVDENNYSDIAEKSQAYGPWLRASPLPRI 251

Query: 258 FKENYANKSNGDETE-----EAQKGDENTEGEKRQWEGLD 288
           F+E   + S+G  ++      +Q     +EG+K + + +D
Sbjct: 252 FEEPRKDASSGSCSKNLFPSSSQSKGGQSEGKKDKEQEVD 288

BLAST of Lcy01g006210 vs. ExPASy TrEMBL
Match: A0A392MLA7 (Zinc CCHC-type-like protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0009196 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.4e-38
Identity = 101/301 (33.55%), Postives = 161/301 (53.49%), Query Frame = 0

Query: 9   EWKKFKLIEEEKEAWITLEPEEVTKIENYIDHNLVGKVLTNRNISKLAIKNAMLGAWKTR 68
           EW+K KL +EE+E    +E EE    E + D +LVGK+ T    +    K  +  AW+ +
Sbjct: 39  EWRKLKLSKEEEEGIEAVESEECG--EEFFDRSLVGKLWTVDPFNVRIFKQVITQAWRLK 98

Query: 69  KDFHVETVSKNTFSFSFESKDDKEWINNNGPWLFDRNLVVLEAPTKNIRINELEFNKTDL 128
               V+ ++KN F F F SK D + +  NGPW FDRNLVVL+  +   + ++LE +  + 
Sbjct: 99  NTVEVQDLNKNLFLFRFASKRDADSVMKNGPWSFDRNLVVLKRISGEEQPSDLEMHTGEF 158

Query: 129 WLRIINLPVGFRNEFIARKIGNILGTFQDWDSDKNSSAWGNSLRIRVRLDISKPLRRGFM 188
           W RI +LP+  R+E +A+K+G+I+G+F + DS K+ +  G  LR++  +D+ KPL+RG +
Sbjct: 159 WTRIYDLPLKLRSESMAKKLGDIIGSFMEVDS-KDCNRLGKFLRVKTSIDLRKPLKRGTI 218

Query: 189 LRTNGICKDCWISIRYERLPDLCFNCGKIGHVAKDC-----YGDKNAERTQERNFEYGSW 248
           ++  G  KD  +  ++ERLP  CF CG+IGH  KDC       D + +  +E+   +G W
Sbjct: 219 VKYQG--KDLKVFFKFERLPTFCFVCGRIGHQIKDCEELESKDDADFDDIEEKELPFGQW 278

Query: 249 MKFQGFASYFKENYANKSNGD---------ETEEAQKGDENTEGEKRQWEGLDVDLNQAS 296
           ++      +  E     S+G           T      ++  +GE  Q     V L  A+
Sbjct: 279 LRASPLPKFTGEFKKENSSGSCSKSLFSEPSTNRKASTEDKEKGEVEQPVVSPVMLMSAT 334

BLAST of Lcy01g006210 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 202.2 bits (513), Expect = 9.0e-48
Identity = 110/302 (36.42%), Postives = 168/302 (55.63%), Query Frame = 0

Query: 1   MEIDELIHEWKKFKLIEEEKEAWITLEPEEVTKIENYIDHNLVGKVLTNRNISKLAIKNA 60
           M+ + L+ +W+KFKL  EE E  + ++ + V   E  + ++LVGK+L  R IS   +   
Sbjct: 1   MDHENLLADWQKFKLTSEEDEIAMDVDVDAVKMAEQGLAYSLVGKLLAKRIISADVLSRV 60

Query: 61  MLGAWKTRKDFHVETVSKNTFSFSFESKDDKEWINNNGPWLFDRNLVVLEAPTKNIRINE 120
           +L AWK      VE++ KN F F F  + D   +   GPW FD+ L+VL+ P  +  I+E
Sbjct: 61  LLLAWKVEHQLTVESIGKNLFLFHFCRECDMNRVMKTGPWFFDKALIVLQKPCSSKNISE 120

Query: 121 LEFNKTDLWLRIINLPVGFRNEFIARKIGNILGTFQDWDSDKNSSAWGNSLRIRVRLDIS 180
           LEFN+   W+ + +LP+ + N+ +A ++GN +G F D D ++   +WG SLRIRV +DI+
Sbjct: 121 LEFNRVAFWIHLFDLPMSWLNKTMAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDIT 180

Query: 181 KPLRRGFMLRTNGICKDCWISIRYERLPDLCFNCGKIGHVAKDCYGDKNAERTQER-NFE 240
           KPLRRG  +  +G    CWI I+YERLPD C+ CG IGH + DC     A +   R   E
Sbjct: 181 KPLRRGIKINIDGPMGGCWIPIQYERLPDFCYFCGVIGHSSHDCDARYLAAQDDSRATSE 240

Query: 241 YGSWMKFQGFASYFKENYANKSNGDE-------TEEAQKGDENTEGEKRQWEGLDVDLNQ 295
           YG W++F G  +  ++    KS   E           ++G E T+ +  +    D   +Q
Sbjct: 241 YGPWLRFVGSKAGAQKGRKGKSPAREDSCGSSSMNSKERGVEETKQQLSEQTNQDGFQSQ 300

BLAST of Lcy01g006210 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 189.9 bits (481), Expect = 4.6e-44
Identity = 89/249 (35.74%), Postives = 143/249 (57.43%), Query Frame = 0

Query: 1   MEIDELIHEWKKFKLIEEEKEAWITLEPEEVTKIENYIDHNLVGKVLTNRNISKLAIKNA 60
           M    L+ EWK FKL  EE +  + ++   +      ++ +L+ K+L+ R+IS   +KN 
Sbjct: 1   MAASNLLEEWKNFKLTSEEDKIAVDIDSSALEGTGKCLELSLICKLLSKRSISCTVLKNT 60

Query: 61  MLGAWKTR-KDFHVETVSKNTFSFSFESKDDKEWINNNGPWLFDRNLVVLEAPTKNIRIN 120
           +  AWK   K F V+ +  N F F+F    D+  I   GPW FDR L++++ P    +  
Sbjct: 61  LKIAWKLDCKAFSVDIIGFNIFLFNFNRSSDRNRILRMGPWTFDRALIIIDNPVSLTKPL 120

Query: 121 ELEFNKTDLWLRIINLPVGFRNEFIARKIGNILGTFQDWDSDKNSSAWGNSLRIRVRLDI 180
           +++F    LW+   +L +   N+ +A ++GN +G F+D +S+ N+  WG+ LR+RVR D+
Sbjct: 121 DMDFRNVSLWVHFFDLSLACMNKTMATRLGNAIGLFEDVESNANNFCWGSCLRVRVRFDV 180

Query: 181 SKPLRRGFMLRTNGICKDCWISIRYERLPDLCFNCGKIGHVAKDCYGDKNAERTQERNFE 240
            KPL RG  L  +G    CWI I+YERLPD  ++CG++ H+ KDC        +  +N +
Sbjct: 181 MKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDC--SDCCVDSVSKNLQ 240

Query: 241 YGSWMKFQG 249
           YG W++FQG
Sbjct: 241 YGPWLRFQG 247

BLAST of Lcy01g006210 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 184.5 bits (467), Expect = 1.9e-42
Identity = 95/245 (38.78%), Postives = 139/245 (56.73%), Query Frame = 0

Query: 5   ELIHEWKKFKLIEEEKEAWITLEPEEVTKIENYIDHNLVGKVLTNRNISKLAIKNAMLGA 64
           +L+ EWK FKL  EE+E  I ++        + ++  LVGK+   R I+   +KN M  A
Sbjct: 5   DLLEEWKNFKLTSEEEETAIDVDASAPATTGSRLEQILVGKLFIKRPITCPVMKNTMRTA 64

Query: 65  WKTRKD-FHVETVSKNTFSFSFESKDDKEWINNNGPWLFDRNLVVLEAPTKNIRINELEF 124
           WK   + F V+++  N F FSF    D+  I  +GPW FDR LV++  P   I  +EL+F
Sbjct: 65  WKLENNAFEVQSLGYNLFLFSFARALDRNKIYKSGPWTFDRTLVLINKPVALIPPSELDF 124

Query: 125 NKTDLWLRIINLPVGFRNEFIARKIGNILGTFQDWDSDKNSSAWGNSLRIRVRLDISKPL 184
            K  +W+R  +LP+G     +A ++GN LG F++ D D  +  WG++LR+RV LDISKPL
Sbjct: 125 TKLPIWVRFFDLPLGCITRDMAIRLGNALGGFEEADCDDLNPDWGSNLRVRVMLDISKPL 184

Query: 185 RRGFMLRTNGICKDCWISIRYERLPDLCFNCGKIGHVAKDCYGDKNAERTQERNFEYGSW 244
           RRG  L  +G     WI I+YERLPD C++CG                 +  +  +YGSW
Sbjct: 185 RRGIKLNLDGPIGGAWIPIQYERLPDFCYHCGL---------------SSSRKKHQYGSW 234

Query: 245 MKFQG 249
           +++QG
Sbjct: 245 LRYQG 234

BLAST of Lcy01g006210 vs. NCBI nr
Match: GAU41525.1 (hypothetical protein TSUD_140560 [Trifolium subterraneum])

HSP 1 Score: 170.2 bits (430), Expect = 3.8e-38
Identity = 91/280 (32.50%), Postives = 156/280 (55.71%), Query Frame = 0

Query: 18  EEKEAWITLEPEEVTKIENYIDHNLVGKVLTNRNISKLAIKNAMLGAWKTRKDFHVETVS 77
           E++E  IT+E EE+ + E      LVGK+ T    +  A K  +  AW+ +    V+ + 
Sbjct: 12  EDEEDCITVEAEEICEEEETFKRTLVGKLWTENPYNVRAFKQTIAQAWRLKNSIEVQDLE 71

Query: 78  KNTFSFSFESKDDKEWINNNGPWLFDRNLVVLEAPTKNIRINELEFNKTDLWLRIINLPV 137
           +N F F F +K D + +  NGPW FDRNL++L   +   + ++L+ +  + W+R+ +LP 
Sbjct: 72  ENLFLFRFTTKKDADTVLRNGPWSFDRNLLILHRVSGEEQPSDLDMHNVNFWVRVYDLPF 131

Query: 138 GFRNEFIARKIGNILGTFQDWDSDKNSSAWGNSLRIRVRLDISKPLRRGFMLRTNGICKD 197
             R+E +A+K+GNI+G F++ D  K+++  G  LR++  LD+ KPL+RG  ++     K+
Sbjct: 132 KLRSEAMAKKLGNIMGNFEEVD-PKDANRTGRFLRLKASLDLRKPLKRGTKIKFQD--KN 191

Query: 198 CWISIRYERLPDLCFNCGKIGHVAKDC-----YGDKNAERTQERNFEYGSWMKFQGFASY 257
            W+  +YERLP+ CF CGKIGH  K+C       + N     E++  YG W++       
Sbjct: 192 MWVDFKYERLPNFCFACGKIGHQMKECEDVEDVDENNYSDIAEKSQAYGPWLRASPLPRI 251

Query: 258 FKENYANKSNGDETE-----EAQKGDENTEGEKRQWEGLD 288
           F+E   + S+G  ++      +Q     +EG+K + + +D
Sbjct: 252 FEEPRKDASSGSCSKNLFPSSSQSKGGQSEGKKDKEQEVD 288

BLAST of Lcy01g006210 vs. NCBI nr
Match: MCH88312.1 (zinc CCHC-type-like protein [Trifolium medium])

HSP 1 Score: 169.9 bits (429), Expect = 4.9e-38
Identity = 101/301 (33.55%), Postives = 161/301 (53.49%), Query Frame = 0

Query: 9   EWKKFKLIEEEKEAWITLEPEEVTKIENYIDHNLVGKVLTNRNISKLAIKNAMLGAWKTR 68
           EW+K KL +EE+E    +E EE    E + D +LVGK+ T    +    K  +  AW+ +
Sbjct: 39  EWRKLKLSKEEEEGIEAVESEECG--EEFFDRSLVGKLWTVDPFNVRIFKQVITQAWRLK 98

Query: 69  KDFHVETVSKNTFSFSFESKDDKEWINNNGPWLFDRNLVVLEAPTKNIRINELEFNKTDL 128
               V+ ++KN F F F SK D + +  NGPW FDRNLVVL+  +   + ++LE +  + 
Sbjct: 99  NTVEVQDLNKNLFLFRFASKRDADSVMKNGPWSFDRNLVVLKRISGEEQPSDLEMHTGEF 158

Query: 129 WLRIINLPVGFRNEFIARKIGNILGTFQDWDSDKNSSAWGNSLRIRVRLDISKPLRRGFM 188
           W RI +LP+  R+E +A+K+G+I+G+F + DS K+ +  G  LR++  +D+ KPL+RG +
Sbjct: 159 WTRIYDLPLKLRSESMAKKLGDIIGSFMEVDS-KDCNRLGKFLRVKTSIDLRKPLKRGTI 218

Query: 189 LRTNGICKDCWISIRYERLPDLCFNCGKIGHVAKDC-----YGDKNAERTQERNFEYGSW 248
           ++  G  KD  +  ++ERLP  CF CG+IGH  KDC       D + +  +E+   +G W
Sbjct: 219 VKYQG--KDLKVFFKFERLPTFCFVCGRIGHQIKDCEELESKDDADFDDIEEKELPFGQW 278

Query: 249 MKFQGFASYFKENYANKSNGD---------ETEEAQKGDENTEGEKRQWEGLDVDLNQAS 296
           ++      +  E     S+G           T      ++  +GE  Q     V L  A+
Sbjct: 279 LRASPLPKFTGEFKKENSSGSCSKSLFSEPSTNRKASTEDKEKGEVEQPVVSPVMLMSAT 334

BLAST of Lcy01g006210 vs. TAIR 10
Match: AT3G42140.1 (zinc ion binding;nucleic acid binding )

HSP 1 Score: 51.2 bits (121), Expect = 2.4e-06
Identity = 32/142 (22.54%), Postives = 57/142 (40.14%), Query Frame = 0

Query: 83  FSFESKDDKEWINNNGPWLFDRNLVVLEAPTKNIRINELEFNKTDLWLRIINLPVGFRNE 142
           F F+S++    I   GPW F+  + V++  TK    ++ EF +   W++I  +P+ F   
Sbjct: 64  FLFQSEESMFSILRRGPWSFNDWMCVIQRWTK--LHSDAEFKRIPFWIQIRGIPLRFLTA 123

Query: 143 FIARKIGNILGTFQDWDSDKNSSAWGNSLRIRVRLDISKPLRRGFMLRTNGICKDCWISI 202
            I   IG  +G F + +  ++ S                                  +  
Sbjct: 124 RIITSIGERMGLFLETNLGRDVSV---------------------------------LKF 170

Query: 203 RYERLPDLCFNCGKIGHVAKDC 225
           +YE+L + C  CG + H A +C
Sbjct: 184 QYEKLKNFCTTCGMLSHDASEC 170

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DU554.3e-4836.42uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1BSZ12.2e-4435.74uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A6J1DX309.4e-4338.78uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A2Z6NZV11.8e-3832.50Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_140560 PE=4 SV... [more]
A0A392MLA72.4e-3833.55Zinc CCHC-type-like protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_000... [more]
Match NameE-valueIdentityDescription
XP_022156185.19.0e-4836.42uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha... [more]
XP_022132681.14.6e-4435.74uncharacterized protein LOC111005481 [Momordica charantia][more]
XP_022158377.11.9e-4238.78uncharacterized protein LOC111024874 [Momordica charantia][more]
GAU41525.13.8e-3832.50hypothetical protein TSUD_140560 [Trifolium subterraneum][more]
MCH88312.14.9e-3833.55zinc CCHC-type-like protein [Trifolium medium][more]
Match NameE-valueIdentityDescription
AT3G42140.12.4e-0622.54zinc ion binding;nucleic acid binding [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 320..340
NoneNo IPR availableGENE3D4.10.60.10coord: 205..237
e-value: 2.6E-5
score: 25.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 348..362
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 260..286
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 260..290
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 371..410
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 342..430
NoneNo IPR availablePANTHERPTHR31286:SF84SUBFAMILY NOT NAMEDcoord: 18..281
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 210..226
e-value: 3.3E-4
score: 30.0
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 211..224
score: 10.757066
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 177..224
e-value: 3.9E-13
score: 48.9
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 32..175
e-value: 3.3E-23
score: 81.8
IPR040256Uncharacterized protein At4g02000-likePANTHERPTHR31286GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKEcoord: 18..281
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 208..226

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy01g006210.1Lcy01g006210.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding