Lcy01g005980 (gene) Sponge gourd (P93075) v1

Overview
NameLcy01g005980
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUbiquitin-related modifier 1 homolog
LocationChr01: 8521508 .. 8524251 (+)
RNA-Seq ExpressionLcy01g005980
SyntenyLcy01g005980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAACCTAAACCCTACGCCCTTTCCCACATTTGCTTTCTCCCTCATCCCTGGTTGCGTAGCCGCACGTCCGTCCGATCCCCTCGCCGCCGTTCTTCTCTCTTTATCTCTCTTGCTCACCAAACGACAGCCAACCCCGTCTTCTGCCGATCGCCGATCGCCGGCAAGCCTCCACCACCACTTTTCTTTCTCCTCTTTTTATCTCACTCTCTGCTGCAACCTCACGTCGCCACGCCAACCCCGTCTTCTGCCGCAGCCCTCCATCAATCGAACACTGTCAGCATCAATTTCTACTTTTTTTTTTTCCTCCGATTCAACCAGTCTCAAAACAGGATAAAATTGGAATGGGATGTAATTTAATTTTAAATCCTGCCAAATCTGACTTATTTTGAATGATTTTTTTTGGGGCATCAAAACAAGGTTTGAAATCATTTTGGATTTTAAATTCTATTCTTATAATTCATTCCAAACACTGAAAACAATTTCAAATGCTTCCAAATCCAGGGGTTCAAACACAGGATAAGTAGGGCATTTAACCCAATGATCTGATCTTTGTCTTCTCTTCTCTCTAGGGTTTTAGAGTTCAGCAGAAGGGAATTGAAAATGCAACTGACCCTTGAATTTGGGTAACTCTCTCTCTCTCCCTGAATTTATTGAATTTTACTCGGAAGGTACTGGGTGTAAAATTTTAGTTGATTTTGTTTCTGGGATACTTGGAAATCAGAAGAAATATTAGATCGCATTCTTTCGTGTTTTGTGTGTTTTTCCGCAGCATGTAAACTTGAATTGTTCTAGCGTTGTTTCTCCGTGAATATAGATTGTTTTCTGAATTTGGGCAAACTCTCAAGTCCATGAATTATCGTGATATTGCTTTTGGGGGTATTCTTCTGGGGCTGGCTCTGGAGAGAGGATAAGATTGACTATTGGATATAATTGTTTTTGTTTAGTTGTCAATAATTCAGAATTTGCACGCTTTCTAGAGATATTCGAACAAACAGAAAATTTTGCTTGAATAATCTGTTGCTTCTTTGCCCCATTTTGTAGTTTTTCTGGTTTTTTTTGGACACCGTGTGGGTGGGGGATTGGAACCTCTTGGTCATTAATATAAGCTTTATTCCAGTTGAGCTATTTTGATGTTGGCGTAATTATTCTGGTTTTGTTCATTTTATTAACGTAGGTTTTTGAAGCATGTTGCATGCGCCACTTTGTCAATTATGCTCAATTGTTATTTTAGTGGATTTTCGATAGATTTGGAAGGTCTTAACCGTATCACTTCTCTTAACTTTTGGTTTCATGCACTGTCTACAATGCCTGCAAATCTTTGACCTCATCAGGACTCTCTATTTCCTCCTCCCTACCAAAACCAAAAAAAGAAGGAAAAAGAACCATAAACATGAAAGGGAGAATATATCAATGAAGATAAATTTACAAAGTATGTCATTTGTTAGGTTTATATGATGGACATGACAGTAATGTTAACCTTTAAATGCAGTGGGGGATTGGAGTTACTATGTGACTCTGTAAAGATACATAATGTCAGCATCGACCCTGAAAATGGAGCGGGAAAGGTAAACTATATTTCCCAACAAGTTAATGAAAGATCCTAGTCGATGTCAAATTCATATTTTCCTGTTTCACCTCTCATCTCTCTGTTTATCGATCGAGTCTAATCTTTTCCTTTAAATCGCTTCTCAGTTAATTATGAAAGATTTGCTCTCTTGGGTCCGCACTAATCTGATCAAGGAGAGGCCAGAAATGTTTATGAAAGGCGACACCATGTAAGTACAAGAAACTTCTCACTACTTTGCCATTTATCTTTTGTACTGTTAAGCAAGTATAAAGATGTACTACTAACTTATCAAGGAGAGAAGGAAATGAAAGTAGGAATGAGGAAAACATTTGTGAAGAAATGGGGCTTGATCTCAATTAAAAAATCCTGCTGAGTATTAAGTTTGTAGCTAATAATATCATGGCCTCAAATGTCCTGCAGTAGACCTGGTGTTCTGGTTCTTGTAAATGATTGTGATTGGGAGCTCAGTGGGCAGCTTGACACAACATTGGAAGAGAAAGATGTGGTAGTGTTCATATCCACCTTGCATGGAGGCTAACTTGATCAGGAATATGTCTTTTTCAGCTTGTATCTACTAAATATTTGTCTGAGATAATATGGTACTCGGGCATTTTAACCTTAAAAATCTGAAACTTTCCTGAAATTTGTCCGACCATATGATATGGACATTGTTACCTCATATATATACGTGGTAATCATGAACAGATTTTGCTCTGGCGAGGCATGTGAAATAATTTCTGTGGGTGGATATTGATGTTGAATAACTGAAGAGAGGAAAAGAAATGCATTATAGGAAATGTTTCACAACTCTCTGGTTAGTTTTATTCAAGTTCCTATTGTTAAATATCTGTTTCAAGCATATGTGAAAAAACTTGCTGATTCCAACATTGTGAAATCAGAAACTTCTTGTTGATTCCATTTTAGTTGTTCATTCCCAGTCCCACATCCAAATTCAATACAAAGAGGACAATCCTTCTTTACTTTTGAAGGAAATTTAGAAAATTTGTCCAATTTTGCAAATGAAAAGATTGGATACTAGTCATCCTTGGATTGTTATTGTGTAATTTATTAATGTTTCTTTGTAATCTCCCAATTTATTCTCTTTTTTTTTTTACAATATGTGGGGTGGGAGATTTGAACCACAGATCTCATGGTTATCGATATAACTTTATGTCA

mRNA sequence

TAAACCTAAACCCTACGCCCTTTCCCACATTTGCTTTCTCCCTCATCCCTGGTTGCGTAGCCGCACGTCCGTCCGATCCCCTCGCCGCCGTTCTTCTCTCTTTATCTCTCTTGCTCACCAAACGACAGCCAACCCCGTCTTCTGCCGATCGCCGATCGCCGGCAAGCCTCCACCACCACTTTTCTTTCTCCTCTTTTTATCTCACTCTCTGCTGCAACCTCACGTCGCCACGCCAACCCCGTCTTCTGCCGCAGCCCTCCATCAATCGAACACTGTCAGCATCAATTTCTACTTTTTTTTTTTCCTCCGATTCAACCAGTCTCAAAACAGGATAAAATTGGAATGGGATGTAATTTAATTTTAAATCCTGCCAAATCTGACTTATTTTGAATGATTTTTTTTGGGGCATCAAAACAAGGTTTGAAATCATTTTGGATTTTAAATTCTATTCTTATAATTCATTCCAAACACTGAAAACAATTTCAAATGCTTCCAAATCCAGGGGTTCAAACACAGGATAAGTAGGGCATTTAACCCAATGATCTGATCTTTGTCTTCTCTTCTCTCTAGGGTTTTAGAGTTCAGCAGAAGGGAATTGAAAATGCAACTGACCCTTGAATTTGGGTAACTCTCTCTCTCTCCCTGAATTTATTGAATTTTACTCGGAAGGTACTGGGTGTAAAATTTTAGTTGATTTTGTTTCTGGGATACTTGGAAATCAGAAGAAATATTAGATCGCATTCTTTCGTGTTTTGTGTGTTTTTCCGCAGCATGTAAACTTGAATTGTTCTAGCGTTGTTTCTCCGTGAATATAGATTGTTTTCTGAATTTGGGCAAACTCTCAAGTCCATGAATTATCGTGATATTGCTTTTGGGGGTATTCTTCTGGGGCTGGCTCTGGAGAGAGGATAAGATTGACTATTGGATATAATTGTTTTTGTTTAGTTGTCAATAATTCAGAATTTGCACGCTTTCTAGAGATATTCGAACAAACAGAAAATTTTGCTTGAATAATCTGTTGCTTCTTTGCCCCATTTTGTAGTTTTTCTGGTTTTTTTTGGACACCGTGTGGGTGGGGGATTGGAACCTCTTGGTCATTAATATAAGCTTTATTCCAGTTGAGCTATTTTGATGTTGGCGTAATTATTCTGGTTTTGTTCATTTTATTAACGTAGGTTTTTGAAGCATGTTGCATGCGCCACTTTGTCAATTATGCTCAATTGTTATTTTAGTGGATTTTCGATAGATTTGGAAGGTCTTAACCGTATCACTTCTCTTAACTTTTGGTTTCATGCACTGTCTACAATGCCTGCAAATCTTTGACCTCATCAGGACTCTCTATTTCCTCCTCCCTACCAAAACCAAAAAAAGAAGGAAAAAGAACCATAAACATGAAAGGGAGAATATATCAATGAAGATAAATTTACAAAGTATGTCATTTGTTAGGTTTATATGATGGACATGACAGTAATGTTAACCTTTAAATGCAGTGGGGGATTGGAGTTACTATGTGACTCTGTAAAGATACATAATGTCAGCATCGACCCTGAAAATGGAGCGGGAAAGTTAATTATGAAAGATTTGCTCTCTTGGGTCCGCACTAATCTGATCAAGGAGAGGCCAGAAATGTTTATGAAAGGCGACACCATTAGACCTGGTGTTCTGGTTCTTGTAAATGATTGTGATTGGGAGCTCAGTGGGCAGCTTGACACAACATTGGAAGAGAAAGATGTGGTAGTGTTCATATCCACCTTGCATGGAGGCTAACTTGATCAGGAATATGTCTTTTTCAGCTTGTATCTACTAAATATTTGTCTGAGATAATATGGTACTCGGGCATTTTAACCTTAAAAATCTGAAACTTTCCTGAAATTTGTCCGACCATATGATATGGACATTGTTACCTCATATATATACGTGGTAATCATGAACAGATTTTGCTCTGGCGAGGCATGTGAAATAATTTCTGTGGGTGGATATTGATGTTGAATAACTGAAGAGAGGAAAAGAAATGCATTATAGGAAATGTTTCACAACTCTCTGGTTAGTTTTATTCAAGTTCCTATTGTTAAATATCTGTTTCAAGCATATGTGAAAAAACTTGCTGATTCCAACATTGTGAAATCAGAAACTTCTTGTTGATTCCATTTTAGTTGTTCATTCCCAGTCCCACATCCAAATTCAATACAAAGAGGACAATCCTTCTTTACTTTTGAAGGAAATTTAGAAAATTTGTCCAATTTTGCAAATGAAAAGATTGGATACTAGTCATCCTTGGATTGTTATTGTGTAATTTATTAATGTTTCTTTGTAATCTCCCAATTTATTCTCTTTTTTTTTTTACAATATGTGGGGTGGGAGATTTGAACCACAGATCTCATGGTTATCGATATAACTTTATGTCA

Coding sequence (CDS)

ATGATGGACATGACAGTAATGTTAACCTTTAAATGCAGTGGGGGATTGGAGTTACTATGTGACTCTGTAAAGATACATAATGTCAGCATCGACCCTGAAAATGGAGCGGGAAAGTTAATTATGAAAGATTTGCTCTCTTGGGTCCGCACTAATCTGATCAAGGAGAGGCCAGAAATGTTTATGAAAGGCGACACCATTAGACCTGGTGTTCTGGTTCTTGTAAATGATTGTGATTGGGAGCTCAGTGGGCAGCTTGACACAACATTGGAAGAGAAAGATGTGGTAGTGTTCATATCCACCTTGCATGGAGGCTAA

Protein sequence

MMDMTVMLTFKCSGGLELLCDSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFMKGDTIRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Homology
[Close]
BLAST of Lcy01g005980 vs. ExPASy Swiss-Prot
Match: B3H7G2 (Ubiquitin-related modifier 1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=URM1-2 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 4.5e-41
Identity = 79/99 (79.80%), Postives = 87/99 (87.88%), Query Frame = 0 

Query: 6   VMLTFKCSGGLELLCDSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFMKGDT 65
           +  T +  GGLELLCDSVKIH V+I+  N +  L MKDLLSWVRTNLIKERPEMFMKGDT
Sbjct: 1   MQFTLEFGGGLELLCDSVKIHKVNINLLNDSDILTMKDLLSWVRTNLIKERPEMFMKGDT 60

Query: 66  IRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           +RPGVLVLVNDCDWELSGQLDTTLE+KDV+VFISTLHGG
Sbjct: 61  VRPGVLVLVNDCDWELSGQLDTTLEDKDVIVFISTLHGG 99

[Close]
BLAST of Lcy01g005980 vs. ExPASy Swiss-Prot
Match: A0MDQ1 (Ubiquitin-related modifier 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=URM1-1 PE=3 SV=2)

HSP 1 Score: 163.3 bits (412), Expect = 1.5e-39
Identity = 78/101 (77.23%), Postives = 85/101 (84.16%), Query Frame = 0 

Query: 6   VMLTFKCSGGLELLCDSVKIHNVSIDPENGAGK--LIMKDLLSWVRTNLIKERPEMFMKG 65
           + LT +  GGLELLCDS KIH V++D  NGA      MK LLSWVRTNLIKERPEMFMKG
Sbjct: 1   MQLTLEFGGGLELLCDSEKIHKVNVDLPNGADSDDFTMKHLLSWVRTNLIKERPEMFMKG 60

Query: 66  DTIRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           DT+RPGVLVLVNDCDWELSGQLDT +E+KDVVVFISTLHGG
Sbjct: 61  DTVRPGVLVLVNDCDWELSGQLDTVIEDKDVVVFISTLHGG 101

[Close]
BLAST of Lcy01g005980 vs. ExPASy Swiss-Prot
Match: Q7GBC8 (Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. indica OX=39946 GN=URM1 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.3e-35
Identity = 68/98 (69.39%), Postives = 82/98 (83.67%), Query Frame = 0 

Query: 8   LTFKCSGGLELLCD-SVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFMKGDTI 67
           LT +  GGLELL + S K+H V + P +G GK++MK LL+WV++NLIKERPEMF+KGD++
Sbjct: 3   LTLEFGGGLELLLEKSTKVHKVDLQPNDGDGKVVMKGLLAWVKSNLIKERPEMFLKGDSV 62

Query: 68  RPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           RPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Sbjct: 63  RPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 100

[Close]
BLAST of Lcy01g005980 vs. ExPASy Swiss-Prot
Match: Q0D6M1 (Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=URM1 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.3e-35
Identity = 68/98 (69.39%), Postives = 82/98 (83.67%), Query Frame = 0 

Query: 8   LTFKCSGGLELLCD-SVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFMKGDTI 67
           LT +  GGLELL + S K+H V + P +G GK++MK LL+WV++NLIKERPEMF+KGD++
Sbjct: 3   LTLEFGGGLELLLEKSTKVHKVDLQPNDGDGKVVMKGLLAWVKSNLIKERPEMFLKGDSV 62

Query: 68  RPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           RPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Sbjct: 63  RPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 100

[Close]
BLAST of Lcy01g005980 vs. ExPASy Swiss-Prot
Match: B6SXH2 (Ubiquitin-related modifier 1 homolog OS=Zea mays OX=4577 GN=URM1 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.5e-33
Identity = 68/99 (68.69%), Postives = 80/99 (80.81%), Query Frame = 0 

Query: 8   LTFKCSGGLELLCD-SVKIHNVSI-DPENGAGKLIMKDLLSWVRTNLIKERPEMFMKGDT 67
           LT +  GGLELL + S K+H V +  P++G GK+ MK LLSWV+ NLIKERPEMF+K D+
Sbjct: 3   LTLEFGGGLELLLENSTKVHKVEVTTPKDGQGKVTMKFLLSWVKENLIKERPEMFLKADS 62

Query: 68  IRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           +RPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Sbjct: 63  VRPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 101

[Close]
BLAST of Lcy01g005980 vs. ExPASy TrEMBL
Match: A0A6J1CUK8 (Ubiquitin-related modifier 1 homolog OS=Momordica charantia OX=3673 GN=LOC111014914 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.5e-50
Identity = 97/103 (94.17%), Postives = 101/103 (98.06%), Query Frame = 0 

Query: 2   MDMTVMLTFKCSGGLELLCDSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFM 61
           MDMT++L FKCSGGLELLC+SVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFM
Sbjct: 1   MDMTIVLAFKCSGGLELLCNSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFM 60

Query: 62  KGDTIRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           KGDT+RPGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Sbjct: 61  KGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 103

[Close]
BLAST of Lcy01g005980 vs. ExPASy TrEMBL
Match: A0A5D3DLM7 (Ubiquitin-related modifier 1 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00190 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.1e-49
Identity = 96/103 (93.20%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 2   MDMTVMLTFKCSGGLELLCDSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFM 61
           MDMT+ L FKCSGGLELLC+SVKIHNVSIDPENG GKLIMKDLLSWVR NLIKERPEMFM
Sbjct: 1   MDMTLTLDFKCSGGLELLCNSVKIHNVSIDPENGVGKLIMKDLLSWVRANLIKERPEMFM 60

Query: 62  KGDTIRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           KGDT+RPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Sbjct: 61  KGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 103

[Close]
BLAST of Lcy01g005980 vs. ExPASy TrEMBL
Match: A0A0A0KCT7 (Ubiquitin-related modifier 1 homolog OS=Cucumis sativus OX=3659 GN=Csa_6G075130 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 2.8e-49
Identity = 95/103 (92.23%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 2   MDMTVMLTFKCSGGLELLCDSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFM 61
           MDMT++L FKCSGGLELLC+SVKIHNVSIDPENG GK IMKDLLSWVR+NLIKERPEMFM
Sbjct: 1   MDMTLILDFKCSGGLELLCNSVKIHNVSIDPENGVGKFIMKDLLSWVRSNLIKERPEMFM 60

Query: 62  KGDTIRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           KGDT+RPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Sbjct: 61  KGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 103

[Close]
BLAST of Lcy01g005980 vs. ExPASy TrEMBL
Match: A0A6J1CWE9 (Ubiquitin-related modifier 1 homolog OS=Momordica charantia OX=3673 GN=LOC111014914 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.4e-45
Identity = 90/97 (92.78%), Postives = 93/97 (95.88%), Query Frame = 0 

Query: 8   LTFKCSGGLELLCDSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFMKGDTIR 67
           LT +  GGLELLC+SVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFMKGDT+R
Sbjct: 3   LTLEFGGGLELLCNSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFMKGDTVR 62

Query: 68  PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           PGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Sbjct: 63  PGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 99

[Close]
BLAST of Lcy01g005980 vs. ExPASy TrEMBL
Match: A0A6J1KGQ8 (Ubiquitin-related modifier 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111494196 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 5.4e-45
Identity = 88/99 (88.89%), Postives = 94/99 (94.95%), Query Frame = 0 

Query: 6   VMLTFKCSGGLELLCDSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFMKGDT 65
           + LT +  GGLELLCDSVKIHNVSI+PENG GKL+MKDLLSWVR+NLIKERPEMFMKGDT
Sbjct: 1   MQLTLEFGGGLELLCDSVKIHNVSINPENGVGKLVMKDLLSWVRSNLIKERPEMFMKGDT 60

Query: 66  IRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           +RPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Sbjct: 61  VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99

[Close]
BLAST of Lcy01g005980 vs. NCBI nr
Match: XP_038876424.1 (ubiquitin-related modifier 1 homolog 2 isoform X2 [Benincasa hispida])

HSP 1 Score: 214.5 bits (545), Expect = 4.2e-52
Identity = 101/104 (97.12%), Postives = 103/104 (99.04%), Query Frame = 0 

Query: 1   MMDMTVMLTFKCSGGLELLCDSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMF 60
           MMDMTV+LTFKCSGGLELLCDSVKIHNVSIDPENG GKLIMKDLLSWVRTNLIKERPEMF
Sbjct: 1   MMDMTVILTFKCSGGLELLCDSVKIHNVSIDPENGVGKLIMKDLLSWVRTNLIKERPEMF 60

Query: 61  MKGDTIRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           MKGDT+RPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Sbjct: 61  MKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 104

[Close]
BLAST of Lcy01g005980 vs. NCBI nr
Match: KAG7026033.1 (Ubiquitin-related modifier 1-like 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 208.4 bits (529), Expect = 3.0e-50
Identity = 97/104 (93.27%), Postives = 103/104 (99.04%), Query Frame = 0 

Query: 1   MMDMTVMLTFKCSGGLELLCDSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMF 60
           M+DMTV+L FKCSGGLELLCDSVKIHNVSI+PENGAGKL+MKDLLSWVR+NLIKERPEMF
Sbjct: 1   MVDMTVILMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMF 60

Query: 61  MKGDTIRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           MKGDT+RPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Sbjct: 61  MKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 104

[Close]
BLAST of Lcy01g005980 vs. NCBI nr
Match: XP_022145475.1 (ubiquitin-related modifier 1 homolog 2 isoform X1 [Momordica charantia])

HSP 1 Score: 207.6 bits (527), Expect = 5.2e-50
Identity = 97/103 (94.17%), Postives = 101/103 (98.06%), Query Frame = 0 

Query: 2   MDMTVMLTFKCSGGLELLCDSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFM 61
           MDMT++L FKCSGGLELLC+SVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFM
Sbjct: 1   MDMTIVLAFKCSGGLELLCNSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFM 60

Query: 62  KGDTIRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           KGDT+RPGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Sbjct: 61  KGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 103

[Close]
BLAST of Lcy01g005980 vs. NCBI nr
Match: KAA0040023.1 (ubiquitin-related modifier 1-like protein 2 [Cucumis melo var. makuwa] >TYK24478.1 ubiquitin-related modifier 1-like protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 204.5 bits (519), Expect = 4.4e-49
Identity = 96/103 (93.20%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 2   MDMTVMLTFKCSGGLELLCDSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFM 61
           MDMT+ L FKCSGGLELLC+SVKIHNVSIDPENG GKLIMKDLLSWVR NLIKERPEMFM
Sbjct: 1   MDMTLTLDFKCSGGLELLCNSVKIHNVSIDPENGVGKLIMKDLLSWVRANLIKERPEMFM 60

Query: 62  KGDTIRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           KGDT+RPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Sbjct: 61  KGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 103

[Close]
BLAST of Lcy01g005980 vs. NCBI nr
Match: XP_038876423.1 (ubiquitin-related modifier 1 homolog 2 isoform X1 [Benincasa hispida])

HSP 1 Score: 193.7 bits (491), Expect = 7.7e-46
Identity = 91/99 (91.92%), Postives = 94/99 (94.95%), Query Frame = 0 

Query: 6   VMLTFKCSGGLELLCDSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFMKGDT 65
           + LT +  GGLELLCDSVKIHNVSIDPENG GKLIMKDLLSWVRTNLIKERPEMFMKGDT
Sbjct: 1   MQLTLEFGGGLELLCDSVKIHNVSIDPENGVGKLIMKDLLSWVRTNLIKERPEMFMKGDT 60

Query: 66  IRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           +RPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Sbjct: 61  VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99

[Close]
BLAST of Lcy01g005980 vs. TAIR 10
Match: AT3G61113.1 (Ubiquitin related modifier 1 )

HSP 1 Score: 168.3 bits (425), Expect = 3.2e-42
Identity = 79/99 (79.80%), Postives = 87/99 (87.88%), Query Frame = 0 

Query: 6   VMLTFKCSGGLELLCDSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFMKGDT 65
           +  T +  GGLELLCDSVKIH V+I+  N +  L MKDLLSWVRTNLIKERPEMFMKGDT
Sbjct: 1   MQFTLEFGGGLELLCDSVKIHKVNINLLNDSDILTMKDLLSWVRTNLIKERPEMFMKGDT 60

Query: 66  IRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           +RPGVLVLVNDCDWELSGQLDTTLE+KDV+VFISTLHGG
Sbjct: 61  VRPGVLVLVNDCDWELSGQLDTTLEDKDVIVFISTLHGG 99

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BLAST of Lcy01g005980 vs. TAIR 10
Match: AT2G45695.1 (Ubiquitin related modifier 1 )

HSP 1 Score: 163.3 bits (412), Expect = 1.0e-40
Identity = 78/101 (77.23%), Postives = 85/101 (84.16%), Query Frame = 0 

Query: 6   VMLTFKCSGGLELLCDSVKIHNVSIDPENGAGK--LIMKDLLSWVRTNLIKERPEMFMKG 65
           + LT +  GGLELLCDS KIH V++D  NGA      MK LLSWVRTNLIKERPEMFMKG
Sbjct: 1   MQLTLEFGGGLELLCDSEKIHKVNVDLPNGADSDDFTMKHLLSWVRTNLIKERPEMFMKG 60

Query: 66  DTIRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 105
           DT+RPGVLVLVNDCDWELSGQLDT +E+KDVVVFISTLHGG
Sbjct: 61  DTVRPGVLVLVNDCDWELSGQLDTVIEDKDVVVFISTLHGG 101

The following BLAST results are available for this feature:
BLAST of Lcy01g005980 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
B3H7G24.5e-4179.80Ubiquitin-related modifier 1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=URM1-2... [more]
A0MDQ11.5e-3977.23Ubiquitin-related modifier 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=URM1-1... [more]
Q7GBC81.3e-3569.39Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. indica OX=39946 GN=U... [more]
Q0D6M11.3e-3569.39Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN... [more]
B6SXH23.5e-3368.69Ubiquitin-related modifier 1 homolog OS=Zea mays OX=4577 GN=URM1 PE=3 SV=1[more]
BLAST of Lcy01g005980 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CUK82.5e-5094.17Ubiquitin-related modifier 1 homolog OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A5D3DLM72.1e-4993.20Ubiquitin-related modifier 1 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A0A0KCT72.8e-4992.23Ubiquitin-related modifier 1 homolog OS=Cucumis sativus OX=3659 GN=Csa_6G075130 ... [more]
A0A6J1CWE92.4e-4592.78Ubiquitin-related modifier 1 homolog OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A6J1KGQ85.4e-4588.89Ubiquitin-related modifier 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111494196... [more]
BLAST of Lcy01g005980 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038876424.14.2e-5297.12ubiquitin-related modifier 1 homolog 2 isoform X2 [Benincasa hispida][more]
KAG7026033.13.0e-5093.27Ubiquitin-related modifier 1-like 2, partial [Cucurbita argyrosperma subsp. argy... [more]
XP_022145475.15.2e-5094.17ubiquitin-related modifier 1 homolog 2 isoform X1 [Momordica charantia][more]
KAA0040023.14.4e-4993.20ubiquitin-related modifier 1-like protein 2 [Cucumis melo var. makuwa] >TYK24478... [more]
XP_038876423.17.7e-4691.92ubiquitin-related modifier 1 homolog 2 isoform X1 [Benincasa hispida][more]
BLAST of Lcy01g005980 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G61113.13.2e-4279.80Ubiquitin related modifier 1 [more]
AT2G45695.11.0e-4077.23Ubiquitin related modifier 1 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015221Ubiquitin-related modifier 1PFAMPF09138Urm1coord: 8..104
e-value: 6.0E-34
score: 116.3
IPR015221Ubiquitin-related modifier 1PIRSFPIRSF037379Urm1coord: 3..104
e-value: 7.0E-37
score: 123.6
IPR015221Ubiquitin-related modifier 1PANTHERPTHR14986RURM1 PROTEINcoord: 4..104
IPR015221Ubiquitin-related modifier 1HAMAPMF_03048Urm1coord: 6..104
score: 33.227036
IPR015221Ubiquitin-related modifier 1CDDcd01764Ubl_Urm1coord: 8..104
e-value: 3.20974E-46
score: 141.895
IPR012675Beta-grasp domain superfamilyGENE3D3.10.20.30coord: 2..104
e-value: 3.3E-35
score: 122.4
IPR016155Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-graspSUPERFAMILY54285MoaD/ThiScoord: 4..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy01g005980.1Lcy01g005980.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032447 protein urmylation
biological_process GO:0034227 tRNA thio-modification
biological_process GO:0002098 tRNA wobble uridine modification
cellular_component GO:0005829 cytosol
cellular_component GO:0005634 nucleus
cellular_component GO:0005737 cytoplasm
molecular_function GO:0031386 protein tag