Lcy01g005440 (gene) Sponge gourd (P93075) v1

Overview
NameLcy01g005440
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
LocationChr01: 7542255 .. 7556989 (+)
RNA-Seq ExpressionLcy01g005440
SyntenyLcy01g005440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCTGAAGCCCTGGGAAAAACATGGTCGCTGTTTGAAGGTTTTTCTAAGAACTGTGAGTAACTTAAGAAAGCTTTTGGATTCCCATTGTCAAACCAACTAGCTAGACCTTCTGACTTGTGAATTGTAGGGTCTTTGGTAAAATGCTGAAACTAAATACGATGGTTGGCGGGGGGGAGGGGAGAACTCTATAGTCTATCCGTTTAAACACTAGAACTTTCTCCCAGTATTTGAAAAGTCTGAACATTTTAGGTTTCTTTTTTTCCCATTCATCAAATTCAATCAGTTTCTTTTAGAAAGATATCCTACTCTTTTGCAAAATACTTATATTTTCTCTAATGTTCTGGTGTAGCCGACTGATGCTTAAAACTAGGAATAATACCATGTCCTTCTTGAATAAACAGCCTTTAAATAGGCTTTCAAACATACACAATTATAACTAACGAAAGAGAGTGTGCCATGCACATGAGGGATTAAACTAAAAGATTAACTTCCTAATAACAGAATCATATGATAGGCTACACCAAATTCCCCCACCCTAACAAAATAATTCGTTCTCGAGTTAATCTGCTAGAACAAACGCATCAGGATGATTATAGGCATATATGTCAGCCACATTAAACGTGGGGTTGATGAATATTGAAAATGTGTATGAAGTGAAAAAGGAAAATGCTCTCTACTCTCTCCTCTCTCCTCTCTCCCTCAGCCCCTTGCCGGTTACATTCCTTTTTGCCGGCAACCTCCATGACTTCTCCTTCAGCCTCACTCCCATGGAACCATCCTACCCGATCCATTTCCATAGATCGAAAAACCTTCTCTATAGCTTTTGATGAATACTCACGTGGAAGTAAAGCAAAAATCACTGAAAAAGGTAGAAATTTCTCCAAGTCTCTGTCTCTCACTTGGAAATCCCTCAACTGGTTAGCCTCCACTTTCAACACCCTTGCCAAAGAACCTTGTACGTACAAATTCTTCTCAGAATTTTGTGGGGATGAATATATTCTTTGTGTTGAAAAACTCAACAATAAACATGGATACTTTGTGGAGATCAACCAACTGCAGAACTCTGGGAGCAGAATCAGCATTCTCATCCCTTCCGAAAGCAACAAACAAGGTTGGTTTTCTTTTTTCTCCTTAATTTCAGATTATCCAAAGGAGTTCAACCACCAGACATCAAAGCCGCAATCACGATCGTATAAGGAGATCCTCCAACAGAAGCAACCAAAGGTTTCCCATCCACTGAATACTTCTCCTCCAGATTTGGTTTGGACAGATATAATTGTTGTGCAGAGGTTCTATCAGCGTGATGATTGGCCATCCATTCGTTCATCAATTCTCTCCTCCATATCCAATCGATGCTCTATTAATCCCTTCCAAGACAACAAAGCTTTGCTCCATGTCTATGATCGCAAGACAGCCCTTGAGTTATGCAAATCGACTGAATGGTCTCAAATTGGAAAACATCGGCTGAAATTCTACCCTTTGACATCGAAAGCATATAAGCAAGATAATTTCACTGTTTCTTATGGTGGTTGGATAGAAGTTCGAAACCTCTCCCCTGTCTATTGGTCTGAAGATGTATTTCGATTCGTTGGTGATAGTTGTGGAGGCTACCTAACAACCTCAAGTCACACCGATAGGATGATCAATCTCATGGAAGCTCGTTTGAAGGTCCGACAGAATTCCACAGGCTTCATTCCATCATCGATTGCCCTCCCTATTGCCCTAGTCGGCGAAGAAATTACAGTCCAAATTCGGGGACTTACCGGAGAGACAATCGGACGGGAACAATTTAATGAGCGGAACCAATTACGGAAGGGAAGTTATGAAGTAGAGGAGGATAAATCGGAATCAAAAGATTTGAATTTAGAGGAAAAAGAGAATACACAAGTGATTGCCCGAGAATCTTCACCGATTCATGAGAGAGAATCACCGATTATGGAGCAGCCACCATTTAATGAAGATTCAATATCGGTTGATTTTCCTAATTTAACAGATTCCACAAAATCCTCCAAAGGAAAAGAGCCATTAATAATGGAAGAGCCATCGGTGGAATTAAAAAATAACATATCTCTTCCTGTGGGCCCTACGAATTTGAAAATTGGTCAAAAGGGCTCAACATCTGGTCTTAGCCCAAAATTGGTTATTGTAGGCTCTGAAGCTTTTTATCCAGCCCATCTCCAATCAATTCACCTCATAAGATTAATTTGGACCCACCCCCCACACACGATTTTGATCTCACCATTTTTAACCCTGACCAACATCATCTTCCTTTAGCCATTATGCCGCCAGAATCAACAAATGCTGGCCAATCAGCCATAAATAACAAAGTGAATGCTCCAGCTCCAGATATTTTAACCAACCATCCCCAACCAGAAACACCTCCCATCAATCAGCCAATGTTTGCCCTCCCAGAATATCTCCGTCATATAGCTCCAATTCTTAGTGAGCATGGGTTGTGTATCATGGCTATCCCTCCATTTCTACCACCTAAAAGGAAGACAGTTACTACTACCGGGAAGAAAACAAAACTCCAGAGAGAGCTTGATAACCTAAAAACTACAGTGCATTATGATAAAACTGCTTCTTTGGCCTTAACGGAGGGAGTACAGGTTGATCGATGAAATTTATTTCTTGGAATATTAGAGGTTTGGGCTCATGGAAAAAAAGAGCTATGATAAAAAAGACTATTCAACAGCAAAATCCAAGCTTTGTCTTGCTTCAGGAAACAAAAACGTCTAATATAGACAATCATCTGATTAAATCCTTATGGAGTTCATCTCATATTGGTTGGTCTTCTCTCGATTCCGTTGGAGCATCAGGGGGCATCCTTATTATGTGGAGTGAACCAGACTTCACTATCAAAGAGACAATTCAAGGTCTTTTCTCTGTCTCTATTCATGTTTTTATGGCTGATGGTTTTTCTTTTTGGCTTACAAATATTTATGGCCCCTCTCGACGAGAATTTCGTATTGACTTTTGGAAAGAATTACATGATCTGGCAGGTCTGGGAGGTGATCGTTGGATCCTTGGAGGAGACTTTAATGTTACCCGATGGTCATGGGAGAAATCTCATGGTCGTCACATCACTCGGAGTATGCGTATTTTCAACCAATTGATTGCAACTTACAAGCTTCTGGATATCCCATTACAAAATGGTTGTTTCACCTGGTCCAGTTTTGGTGACAATCCGTATCTCTCCTTAATAGACAGATTTTTGATTTCCAAAGATTGTCTGAATAAATTCGGGTCTTCTCATCTTCTTCGGCTTGACAGAATTACTTCAGATCACTACCCTCTTTCCCTTACTTTTGGTGATATTAATTGGGGTCCTGGGCCTTTTCGATTTGAAAATTCCTGGCTGCAAATTGCATCATTCCGTGAGGTGTTGGATAATTGGTGGAATCACAATTCTCTTCAAGGTTGGCCGGGTCATGCTTTTATGATGAAATTAAAAGGGCTGAAAAATGAGCTTCGAAATTGGAATAGATCCCACAGTTTGGCATTATCACAGCTTCCATCTTTGATTACTCAGTTAAAACGATTAGATAACCTTGAGGACAATGGTCTAACTATGTCTCAAAAGGAATCTAGGTGTATTCTTCGAGAACAGATTGAAGATTTAACTGCCCAGGAGCATATCCAATGGAAACAACGTTGTAAACTTAAATGGCTTAAAGAGGGTGATGAAAATACTAAATTCTTCCATCGCATCTTGGCAGCCCGTAAAAGGAAGAATTCGATTACTGAGGTGTTATCTCGAGGCGGGGTCAGTTTGGTTTCAGCCAATGATATTGAAAAAGAATTCGTTGATTTTTATCGGCTTTTGTTCACCAAAGATAATCGTACTCGTTTTCTGCCAACCAATGTTGATTGGTGCCCAATTAGTGAAGCTCAATCGAAAGGTTTGGAAGTTGCTATTTCTGAAGAAGAAGTTTTTAATGCTCTGAACTCTCTTAGTTCTAGTAAGTCTCCAGGTCCGGATGGTTATACAGCTGAATTCTTTAAATTCTCTTGGAACACTATCAAACAGGATCTAATGTCTATGATTCAAGATTTTTATAATACTGGAATTATTAACGTGGCTCTGAATGAAACTTATATTTGCTTGATTCCAAAGAGGTTAGACTCCAAATCTGTTGCTGATTATCGTCCCATTAGCCTAATCTCATGTGCTTATAAGATCATTGCTCGAGTTTTATCTAATCGTTTGAAGCATGTATTGTCGTCTACCATAGCAGATAATCAAATGGCTTTTGTTGCTAACAGACAGATTTTGGATGCTTCTTTAATTGCTAATGAATTAATAGATGATTGGCAAATTTTCTCAAAGAGAGGGGTGGTTCTTAAATTAGATTTGGAAAAGGCCTTTGATAAAGTAGACTGGGATTTTCTGGATGCAGTCCTACAGGCAAAAGGCTTTGGTTCAGTTTGGAGAAAATGGATTCGTGGTTGTATCTCTAGTGTGAATTATTCAATCATCATTAACGGGAAACCTAGAGGTAAAATTATCCCTTCTCGTGGCATTCGTCAAGGTGATCCTCTGTCTCCCTTCTTATTTATTCTGGTTTCAGATTGTTTGAGTAGACTCCTTTCCCACAGTGCTAGTTTGGGTAAAATTATGGCTCATCCAGTTGGTGCTTCATCTTTTAGCCTGAATCATTTACAATTTGCGGACGACACACTTTTATTCTCTTCTTTTGATTCAGAGGCTTTGAACAAGCTTTTTGAAGTTATCAATATATTTGAATTGGCTTCGGGTCTAAATGTCAACCTTGCCAAGAGTGAAATCTTAGGGATCCATATTGATGATACAAAGTTGGAAGAAATGGTTGCTAAATTTGGTTGTAAGCGTGGTTTTTGGCCTAGCACATATCTTGGGCTTCCTTTGGGTGGTAACCCGAAAAACTTTGTTTTCTGGCAACCAGTTATTGAGAAGATTCAACATAAATTACATAGTTGGAAATATGCCTTTATATCCAAAGGAGGAAGGCTTACCCTCATCCAAGCTACTCTTTCGAGTATGCCGACGTATTTTCTGTCTTTGTTTAAACTTCCAAGTAAGGTTGCTAAATCTCTTGACAAGCTAGTGCGAGATTTTTTCTGGGCAGGTTCTCAAGGGGATGGTGGTATGCATAATGTTAATTGGGATAAGACTCAGCTTCCGAAATTACTGGGAGGTCTTGACATTGGCAATTTTCAGCTTCGAAATATAGCCTTGTTAGCTAAATGGATTTGGAGATTTTTGCACGAAGAAGGATCTCTTTGGCGTAATCTCATTATTGCTAAATATTACAACTCGGAGGATGTTAGACATTGGCCTATTCCCATTCAAAGGGGATCTTTCAAATCTCCTTGGCGCTTTATTTGTACTACTATCGATAAGGTTACTAGTCGTATTCATCGAATTATTGGTAATGGTTGTAGCACATTTTTTTGGAAGGATTCCTGGCTGAATGGAGTGATTCTCTCAAATCTCTTCCCTCGCCTTTATCGGTTAACTACCAATCCAAACGCCAGGGTTGCAGAAGTATGGAACTCTATAGAATCAGCATGGAATCTGAGTCCTCGTCGTCACCTTAATGAGTTTGAGATTATTGAATGGGCAAATTTATCCTATCTTCTGTCTCCTATTCGACTTCGGGATATGAATGACTCTTGGTCTTGGCCCCTTGAAGCATCCAAATTATTCTCTGTTAAATCCTTGATGGTTGACCTTTTGGGTGGTTCTGATACTATTTTGAATAATTTATATTCGGTGATATGGAAAGATAATTATCCTAAAAAGATAAAAATCTTTCTATGGGAGCTTAGCCTTGGGGCTATCAATACAGCGGATCGTTTTCAACGTAGAATGCCTCATTTTTCACTTTCGCCATCTTGGTGTGTTATGTGCTCATCAAATATGGAGAATTCGGGCCATCTATTTGTCACTTGTTCTTTTGCTACCAAGTATTGGAATTTGATGCTTGAAGCTTTCGGTTGGCATTTACCGATGTCGAATAACATTCATGACTTTCTGGCGTCTATTTTTGTTGGTCATCCTTTTCAAGGAACAAAGAGGATTTTATGGCTGGCTTTTAATAGAGTCTTCTTTTGGTTTCTTTGGAACGAAAGAAATGGAAGAATTTTTAGGGATGTATCCTCAACCTTTGATTCTTTTTTTGAAAAGGTTCTTTTCTATGCGTTGTATTGGTGTAAATGTCAACACCCCTTTGCTTCTTATAGTCTTTCTTCTTTGATTGCTACTTGGAATAATTTCTTGTAATCCACCTTTAGGTGTGTATCCTTATTTCATTTATCAATGAAATTATGTTTCTATTCAAAAAAAAAAAAAAAAAATTAAACGTGGGGTTGATATTGTATTCGTCTGACAATCCTATTTTATAAGTGTTGTCTCCAAATCTGTCTAGAATTGGGAATGGGCCAAGTTTCCTCTTTTTTAGTTTGTTATAGGTCCCGGTTGGAAATCTGCTCTTCCGTAGATGAATCATGACTAAATCCCGATAGCAAACTCCTTGAACCTCCTCTTTTTGTTTGCAGCCTCCTTATATTTTGTTGTTTGTTTCTCTATATGCTCATGAACCATTCGGTGTAATTCTTGTATTCTGGCCGCCATTTCCTCTGCCTCCACACTAAGATCAACAGATGAAGGAATATGTGTTAAATCCATTATTAGTCTAGGAAGTTTAGTGTAAACAAGTTCAAATGGGGACTTCCCTGTTGTTCGGTTCTTGATGTGGTTGTAGGCAAACTCTGCTTAAGCTAATGACATATCCCACTGTTTTGGTTTGTCACTGCTTATACATCTTATCAAATTGCCCAACGTTCTATTTGTTACCGCCGTTTGACCATCTGTTTGTGGATGGCTTGTTGTGCTATATTTAAAAGTGGTGTCAAATTTTTTCCACAATGTTTTCCAAAAGTGACTAAAAAACTTTACATCCCGATCGGAAACAATTGTCTTTGGTATACCATGAAGCCCTACGATTTCCTTGAAGCTTAGCAATGTAAATGGCGTTGGATGTTTTCTTACATGCTAGGAAGTGAGCCATTTTGCTATACCGCACTACCACTAACATCGAATCAAAACTACGCTGTGTTCGTGGGAGGCCAATGATGAAATTCATGGAGAGGTCTTCCCAAATATTTTCTGGAATTGGAAGAGGCATGTGAAGACCGGTGTTTTGAGATTGTCATTTAAAGGTTTGGCAAATGTAACAACGGGTAAGGTAACATAGTTGTTGACATCTTTTCGAAGTTGTGGCAAAAAATATCGAGTTTCCAAGATATTTAAAGTTTTATCCCCTAGGTGTCCTGCTAATCCCCCAACACGTGCGTCCCTGATAAGAGCTTCCCTTAGGGATGAGTGTGGTATACAAAGAACGTCATCTTTAAAAAGGAATCCCTCGACGACGTGAAAATCTCCCGATGGTTGATGCTCCATACACGGTTTCCAAACTGTGCCAAAGTCTTTATCTTCACTGTAGGCGTCTGGAAGATGATCCATGACTATGATCTCCCCTTTTAAGATTGTTAGAAGACTTGCCTTTCGGCTTAGAACATCTGCTACTTTGTTAGTAGTACCCGATGTATGCTTCATAACAAAATCGAATCGTTGTAAAAATGATAACCATCTAGCATGCATCCTACTTATTGATTTTTGAGAGTGCAAAAATTTGAGGGAAAAATGATTAGTAAATAGCACAAATTCCCTACTCAACAAGTAATGTTCCCATTGTTTTAAGGCTCTAACTAAAGAATATAACTCTTGTTCATAAGTTGACCATTTGTGTCTTGATGGGCTTAATTTTTCACTGAAGAATTTGATTGGATGATTGTTCTGAGATAAAAATGCTCCTATGCCTATACCTGATGCATCCACTGAAACTTCGAAAGGAAGATTAAAATTTGGGAGTGTTAGGACAAGACTACAAGTAAGTTTTTCTTTAATTAGTTGAAAACTTTGTAGTTGGGCTCGGCTCCAAAGGAAGTGACCCTTGTTTAAACAATTGGTCAAAGGAGCTACGATGGTACTGAAATTCTTTATAAATTTCCTATAGAAGGATGCTAATCCAAGGAAACTTTGTACTTCTTTAACTGTCTTTGGTTCTACCCACTCCTGAATAGCCGTTATTTTTATAGGATCCATTCTGATCTTATTATGCCCAATTATATAACCTAGTAATGATATTTCATATGTTGCAAATAATTTTTTTTTTCAGGTTTATAACCAAAGCATGTTTCTGTAATGTAGAAAACAAAAGCCAATATGTTCTAAATGATCTTCTAATCCTCGACTATATATGAGTATGTCATCAAAGTAGACTACAATGAATTTATTAAGAAATGGAAGTAGTACCTGGTGCATAAGTCTCATGAATGTGCTTGGAGCATTTGATAATCCAAATGGCATCACAAGCCATTCAAAAAGACCTTCATTAGTTTTGAAGGTTGTTTTCCATTCATCTCCCGGCCTTATCTGCATCTGATGATATCCACTCTTTAAGTCAATTTTTGATAAAATTGTGGCGCCTCCTAGTTGGTCCAAGAGATCACTGATTCGTGGTATAGGAAATCGGTATTTTACAATGATTTTATTGATCGCTCGACTGTCCACACACATACGCCAAGTGCCATCTTTTTTGGGCGTTAGTAGGGCTAGGACAACACACAGACTGAGGCTTGGTTTGATGTGGCCCTTGTCTAGAAGCTTTTGAACCCGTTCATGCAATATTTTATACTCTGCTGGACTCATTTTGTAATGGGGAAGATTAGGGAGGGTTGCTCCGGGTAAGAAATCAATGGAGTGTTGTATGTCTCGCAGAGGGGTAGACCATTTGAACTGTCAACAATATCTCTGTATTTGTGTAATAAATTTTGTACCTCACTTGGAATATTAATGTTATAGTCAGAATTATCAAAATCTTTAATGACTAGCCCAAGTATAGGTAATTGTTTCTCACAAAGAAAGATTTTTCCAGAGGATAAGGTAAAAAGTTGACCTTTCTTGGTTATGTTGTTGGTATTTGTTATTTGTTTTGCCGGATTGATAGGTAGAAGAACTATTTTCTTGCCCATCCATGAGAACTCATATGTGTTGTCTCTTCCTTTGTGTGTTGCTTGAACATCATATTGCCAAGGACGTCCCAAAAGTATATGACATGCATCCATATTTAGTACATCGCAGATAATTTGGTCCTTATAGCTTACCCCGATTGACAAAGGAATGGTACTCATATGTGTTACTTGAGAGCTCTGCCCCCTTTCTTTATCCAACTGACTTTGTAGGGTGCTGGATGGATGTGGATTCAATGGTAGATTTAGGATAGTTACTACCTTGTTGGCCACAACATTCTTCGTGCTTCCACTATCAATAATAACATTGAAGATCTTCCCATTGATAGTGCAACGAGTCTTGAACAGAGTATGTCTTTGATAACTTGGATCAGTTTCTTGGGCTAACAAAAGTCGTTGAATAATCAAGGATAGCGGGTCCCCTTCATCTGGTTCAAGATAGTCCACATTTTCCTCTATATGAGTACCATCACTTTCTTCTTGATATTCCACATTATCAACAATAACCAGTGTTTTCCTTTGCGGGCATTCGTTTGATAGATGGCCACTTTGATTGCATCTAAAACACTTTCCTAGTGTTGGTATGGAATAAACATTTGAGTTTCGTTTTATGATTGAGTTCTCTGAGTTCTTTGAATCTTTGGAGGTTCCCATGTCCACTTGCTTTCTTTTGAGTGTTGTAGTCGTATTTTGGTGAGGAACTTTATCAGGTGTTATGGTTTTGTGAAGGTCAGTACCCTATTCTCCCGTGATCCTCCTTGAATATTGTTTTTTGTACCGATTGACTATTTATTCTTCTACTGTTGCTGCTGCGGAAATTGCCTTGTTTAGATATGCTATTGGTTGTAATGCGAGTTATTCTTTAATATCAGTCCGTAGTCCACCCTTGTATCGTGCTACTAGATATTGCTGATTTTCACCAAGATTTGTCCGTGCTCCAAGCCTATGAAATTCTTCTGTGTATTCCATAACCGATCGACTTCCTTGTTGACAATTTTGGTACTGATTATACAAGATTTGCTCGAAGTTCATTGGGAGGAATCTCTCCTTCATTAGCCTTTTCATTCGTTCCCATCTTCTGATTGGTTTTTTCCCATACCTTTGGTGATTTAACTCCCGTTGATCCCACCACGCTTGAGCTCCACCCTTTAATTTTAGTGCCACCAACTTCACTTTCTTGTTGTCAGGTGTATTCATGTAGTTAAAAAAAATTTCTACATGTCTTACCCATTCCAAGAAAGCTTCAATCTCCATTTCCCGCTATATGTTGAGATATCAATTTTCATTTTGAAGTCATTTTCTTGCTGCTGATATTGATACCTATGGACCCTTTGTCTTTCTCTTTGAACGTCTAACGGCCTGTCATCTTCGCTGGAAGTATCATCCACCCAATCTTGCTACCTTCTATACAGTGGATTGTTGTTGAAATCTTGATGCACCATATGTTGTTCTTGATATATTTTTGGAGCTAAATCCACTTCTTGGGCCATTCTTTGTTCAATCGTTTGTCTTTCTTGCCATTGTCTTGTCCTATTATCTTCACGCGGATGTTCTTGCTGAATTCTTCCCACATTAGATTGTATCACCAAATTGACGTTTTGTTGTTCAGATTTGTTGCCCATCTTTTCGCAAATGATCTCACCCACATCGTTCTTCAATATTTTCATATCTTGTTCAACCGACAACAAGTGTATGGTTGTTGATCGTGGTGAGAGGACGGTGGTAGGCTTCGCCTCTTTTCCAACCGAAGATGAGTCTCCCATCACATTGGTTGAAACTCTCTTGGTTGCCATGAAGAAAGAGTCCAGAATCTTGTGCGGTGTAGCCAACTGATGCTTAAAACTAGGAATAATACCGTGTCTTTCTTATTGAATAAACAACCTTTAAATAGGTTTTCAAACATACACAATTATAACTAACAAAAGAGAGTGTGCCATGCACATGAGGGATTAAACTAAAAGATTAACTTCCTAATAACAGAATCATATGATAGGCTACACCATGTTCCTAAAAATATGTTAAATTATAAAATTGGTTCTTATAATTTGATTTTAATTTCAATTTGGATCTAGGATATTCTTTCCTCTCTGCGAACAATGGGAATGCCCCATGAGCTAAATGTGGTTCCTGCCCTTGTCTCTGCCTCGTCTTCTTTACACACATACATATATATATACATGTCCATGTATCTGTGTGTATATATATATTTTGAGAATTCATGTATGTGTATATATGTATTATTGATTATGAATCTTAATATTTAAATTTAAGGTTCTATTGTTAAATGACTTGTGAGATTGTATGCATAATGATATGTTTGAACCCATACTTATGAATAATTAGATAATTGATATGAAATATTATTTTATTTTTGTTAGAATGTCTAAGAATATTCTCATTAAATAGGGATTCTCGCTGGGGAATTAACCATTCAATTGAAAATTTTCTAACAAAATCAATTTTTCTTAAATTTTCATTTTTAAAATTAAATAGGAAATAATTTTCCACGAATTCCTCAGGAGGAGTTTTTGGTCCTCGTGAAATTTTGTGAGAATAGAAAATCAAATTGTGGGTTGGGATGGAGATGGGGACAAGCCCATCTTGTCCCATGAGCTTAGATGATACAGAAATTATAGGAATTAGACCATTTTGGAACCAATATTTCACAAATCTCCAATTATGAAAAAATTTTCAGCTGTCTTGGCTCAAGATTTTCTAATTAAATCTTCCTTATTTTGCCCTCCAAAATTCTGCACATCAAAAATTGGTTTGTTTTAATTCTTTCCATAATAAAAACTACTGTTAAGATTTAACCAATACCCAACCCTAACCTTAAATATGTTTCACCAAAATCTTTCTCCAATTGCCGTCACCAAATTCTTCCTCCAATTGCCGTCAATTTGAAGTTTTTTTTGCGGCTCCATTTGCGGTGGGACAATCTCAAATTTCTCTACAGCTCCACCACCAATTGTCGTCAATTTGAAGCAACATGAGAATTCATTTATTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTTTGGGTTAAACAATATGAATACCATGACCTATATATTTGTCTATTCTTTTTTTTTTCTTTTTTTTTTTTAATTTTGTCAAACAGTATGAATAGGAATCCAATTACATAGTTTGCATTTTTTCAATTTTGTTATCAATAGATATTTTTTGTTATTAATATCTTATGTTATAAGATGTTTCTAATTCACACTAACCCTTATTTACATCTAATCACCCACTTGATTGTAGAATGTAATGTTTATTCAAATAATAAATATATACCATGCAATATAATATATAATCAATATACTGAACCCATTATATATTATATATTCATCATTGTGTATTTTTTTTTTTTTTTGAAAAATTCATCATTGTGTATTTAGTGTTGTATATTGTATCATAAATATGTACTTGAATTTTTTTTTTGTTGAGAAGATATATACTTGAAATTATATTATATAAACCTCTGTATATAGTATATATACGTCATGATTTGTAAAGTTAGTAAATTTTCAAAATTATAAATAAATGTCATGCAACATAATCCTTATTAAATATTCTTCATACATGTTTTTTAGGTAGTAATCTCATCCATATGGTGTTTGGCGGTCGTTGGAAGAACTTCTGCTTCCTTCTTTTTTATACACATTTTTCCTGGGCAACCCCACCAATCTTTGACTTCTGTGAGTTGGATTCTTATTTGAAGATTTTTTTTCTCTCCCCATTGCCTAATCTATTATCTCCATACACATAAAACTATATTTTAGTAAAAAAAGAGCATGCAATACCCTATATTCGCACATTTGTATTATTCAAATGCAATTCTCTAAATAAATTTAAATTTCAAAAAATGCACAACTCTATATTTCTATTGATCATGATTATATTCGAATATAACAATCATATAAAATATATTATCCTTAACAGAAACCATCTAATATATATATATAAACCCTTCGATCAACCATGTTTTGTATAAACCACCAGATATATTATATAAACCTCAAACTAAATGATATATTATCCGGATTATATAATTTTTTATAAACTCACATAACAAACCCAAATATACCAAACCAAAGAATATTTTTTTATAAACCACAAGAATCCAATAATCATGACCTGAATGATTTTTATAAACTCACAACTAAGTAAATTTGGCTGGATGGTTTTTATATATCAAACTAACAGTATATTTTATATACTATGCAGAATGATTTGTATAAACCCACAACTAAGTAAACAAGCTAATAGTATATTTTATATAAACTACATAACAAACCCAAATATACCTTTGAATAAACTCCAACAGCCAACCAAGACAATGCCGCCGACAGATTGAAGACGTTTTGTCTAAACAAGAAAAACATAAGAACCACACCAAAAAAAGAAAAATAAAAACGAAAAAAGAAGCATCGATCGGCAGAAGCGTTGTCGTCGGGCCGCCGGCAACACAGACGCCAATGTCGTCGGCCACTTACAACGTTTGAAGGATGAGACGGCAACAAAACACACGGCACTCGGAGCAGGAACACAGACGACAGAAACCTAGGCAGCGCTCGGAGGATGAGACAGCGGGAATAGAGCGGCGCGCGGTCGGAGGATGGACGACGAAACACAGAGGGAGTGAGCGTGAATGGTCGGCTAAGCGTGAAGCAGAAAAGTCGAGGGAGGGGGGAGACGGGCGTGAAGAAACGACTATGAGATTATATTTGGGAGATATATTTTTGGGGTTTGAAAATAAAATATTGAGGGATTCGAGGAGTTATTTGGAGGGAGGATATGAAAAGATTTTTGCAGCAACTAATTATTACGATAAGATGTTTTGGGAAAATATATTGATAATAACCATGTTTATTTTCTTAATTATAATATAATGGGCATTGATGTAAATTAACATCTATTTTGGCTTGGCTTAGGACAAAGCTGAATTCTTTTTCAAGATTAAACATTTATGAAATTTTGAATCCAATTTGGTCTATCTATGTAGTTAACCCTAGATGATAACTATATTAAATACATGACACATTTTATATTTATATGGTAACAAGTTTATGCTTTTTATTTGGGTTAGCTTTTCTTGATTAAGGTTTAAATAACGAAAAATGAATGGACTTTCTGACAAATGATTAATAAAGTTTAACCAAATTATAAGGATCAAATTGAAACTAAACCTATGCAACCAAAATAAAAATTTGTAATTTGAATGGAAATGTTTGGATGTATAATGGGTTATGGGAACTGTAATGAAGATTAAAATCCTAGCTTTTGTAGGGAGGTAGACCATCCTATTTCTGGAGGGGGATTATTTGGGGTAGAGAGCTAGTTGTGAAGGGAGGACGGTGGAGAGTTGGAAATGAAGAGACAATTGACATTTATGATGATCAGTGGATCTCGAGACCGAAAACATTCAGGTTGTTGTCCCCGCAAAGGCCTTTAACTAACTGCAAAGTTAAAAGCCTTTTTGCAGGTAACCAATCATGGAATATTCGTTTACTAACAGATCTTTTTGTGCAGGATGATGTGGACAAAATCCAAGATGTTCCAATTGCTGGAGATAGCCATTCAGACACTTTCTTTTGACATTATGACAAAACAAGAAAGTACTCAGTCAAGAACGGATACAAACTTGCAATAG

mRNA sequence

ATGGATCTGAAGCCCTGGGAAAAACATGGTCGCTGTTTGAAGGTTTTTCTAAGAACTGTAGTAATCTCATCCATATGGTGTTTGGCGGTCGTTGGAAGAACTTCTGCTTCCTTCTTTTTTATACACATTTTTCCTGGGCAACCCCACCAATCTTTGACTTCTGGAGGTAGACCATCCTATTTCTGGAGGGGGATTATTTGGGGTAGAGAGCTAGTTGTGAAGGGAGGACGGTGGAGAGTTGGAAATGAAGAGACAATTGACATTTATGATGATCAGTGGATCTCGAGACCGAAAACATTCAGGATGATGTGGACAAAATCCAAGATGTTCCAATTGCTGGAGATAGCCATTCAGACACTTTCTTTTGACATTATGACAAAACAAGAAAGTACTCAGTCAAGAACGGATACAAACTTGCAATAG

Coding sequence (CDS)

ATGGATCTGAAGCCCTGGGAAAAACATGGTCGCTGTTTGAAGGTTTTTCTAAGAACTGTAGTAATCTCATCCATATGGTGTTTGGCGGTCGTTGGAAGAACTTCTGCTTCCTTCTTTTTTATACACATTTTTCCTGGGCAACCCCACCAATCTTTGACTTCTGGAGGTAGACCATCCTATTTCTGGAGGGGGATTATTTGGGGTAGAGAGCTAGTTGTGAAGGGAGGACGGTGGAGAGTTGGAAATGAAGAGACAATTGACATTTATGATGATCAGTGGATCTCGAGACCGAAAACATTCAGGATGATGTGGACAAAATCCAAGATGTTCCAATTGCTGGAGATAGCCATTCAGACACTTTCTTTTGACATTATGACAAAACAAGAAAGTACTCAGTCAAGAACGGATACAAACTTGCAATAG

Protein sequence

MDLKPWEKHGRCLKVFLRTVVISSIWCLAVVGRTSASFFFIHIFPGQPHQSLTSGGRPSYFWRGIIWGRELVVKGGRWRVGNEETIDIYDDQWISRPKTFRMMWTKSKMFQLLEIAIQTLSFDIMTKQESTQSRTDTNLQ
Homology
[Close]
BLAST of Lcy01g005440 vs. ExPASy TrEMBL
Match: A0A803PEK8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 5.2e-11
Identity = 35/103 (33.98%), Postives = 56/103 (54.37%), Query Frame = 0 

Query: 4    KPWEKHG---RCLKVFLRTVVISSIW-CLAVVGRTSASFFFIHIFPGQPHQSLTSGGRPS 63
            KP EK G   R L +F + ++   +W C+       +       FP +      SG   S
Sbjct: 1098 KPKEKGGLGFRDLGLFNQALLAKQVWRCIRFPDNLCSQVLKASYFPTRSILEAKSGAHAS 1157

Query: 64   YFWRGIIWGRELVVKGGRWRVGNEETIDIYDDQWISRPKTFRM 103
            + WR ++WG++++  G RWRVGN ET+ + +D W+SRP TF++
Sbjct: 1158 FVWRSLMWGKKVIANGYRWRVGNGETVRVLEDPWLSRPVTFKI 1200

[Close]
BLAST of Lcy01g005440 vs. ExPASy TrEMBL
Match: A0A803QJV0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 33/103 (32.04%), Postives = 57/103 (55.34%), Query Frame = 0 

Query: 4    KPWEKHG---RCLKVFLRTVVISSIW-CLAVVGRTSASFFFIHIFPGQPHQSLTSGGRPS 63
            +P E+ G   R L++F + ++   IW CL   G           FP +   +   G   S
Sbjct: 1284 RPKEEGGLGFRDLELFNQALLAKQIWRCLRQPGSLCTKVLKASYFPNKSVLAAKCGAHAS 1343

Query: 64   YFWRGIIWGRELVVKGGRWRVGNEETIDIYDDQWISRPKTFRM 103
            + WR ++WG+E+++KG RWRVGN + + + +D W+ RP +F++
Sbjct: 1344 FVWRSLVWGKEIILKGYRWRVGNGQQVRVLEDPWLPRPTSFKV 1386

[Close]
BLAST of Lcy01g005440 vs. ExPASy TrEMBL
Match: A0A803NHG3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.5e-10
Identity = 33/103 (32.04%), Postives = 58/103 (56.31%), Query Frame = 0 

Query: 4    KPWEKHG---RCLKVFLRTVVISSIW-CLAVVGRTSASFFFIHIFPGQPHQSLTSGGRPS 63
            +P E+ G   R L++F + ++   IW CL   G   +       FP +   +   G   S
Sbjct: 1284 RPKEEGGLGFRDLELFNQALLAKQIWRCLRQPGSLCSKVLKASYFPHKSVLAAKCGAHAS 1343

Query: 64   YFWRGIIWGRELVVKGGRWRVGNEETIDIYDDQWISRPKTFRM 103
            + WR ++WG+E+++KG RWRVGN + + + +D W+ RP +F++
Sbjct: 1344 FVWRSLVWGKEIILKGYRWRVGNGQQVRVLEDPWLPRPTSFKV 1386

[Close]
BLAST of Lcy01g005440 vs. ExPASy TrEMBL
Match: A0A803Q0L5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.6e-10
Identity = 34/103 (33.01%), Postives = 55/103 (53.40%), Query Frame = 0 

Query: 4   KPWEKHG---RCLKVFLRTVVISSIW-CLAVVGRTSASFFFIHIFPGQPHQSLTSGGRPS 63
           KP +K G   R L  F + ++   +W C+  +    +       FP +      SG   S
Sbjct: 427 KPKDKGGLGFRDLGFFNQAILAKQVWRCIRCLNNLCSRVLKASYFPHKTILEAKSGACAS 486

Query: 64  YFWRGIIWGRELVVKGGRWRVGNEETIDIYDDQWISRPKTFRM 103
           + WR +IWG++++V G RWRVGN E + + +D W+ RP TF++
Sbjct: 487 FVWRSLIWGKKVIVNGYRWRVGNGENVRVLEDPWLPRPVTFKI 529

[Close]
BLAST of Lcy01g005440 vs. ExPASy TrEMBL
Match: A0A803PTB0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 7.6e-10
Identity = 38/105 (36.19%), Postives = 57/105 (54.29%), Query Frame = 0 

Query: 5   PWEKHG---RCLKVFLRTVVISSIW-----CLAVVGRTSASFFFIHIFPGQPHQSLTSGG 64
           P EK G   + L++F + ++   +W      +++VG+   S +F H            G 
Sbjct: 583 PKEKGGLGFKDLELFNKALLAKQVWRVVRNPMSLVGKVLKSSYFSH----SSILDAKKGS 642

Query: 65  RPSYFWRGIIWGRELVVKGGRWRVGNEETIDIYDDQWISRPKTFR 102
             S  WRG++WGRE+V  G RWRVG+ E IDI +D+W+ RP  FR
Sbjct: 643 CSSAVWRGLLWGREIVEAGSRWRVGSGENIDIINDRWLPRPVRFR 683

[Close]
BLAST of Lcy01g005440 vs. NCBI nr
Match: XP_021808571.1 (uncharacterized protein LOC110752263 [Prunus avium])

HSP 1 Score: 71.2 bits (173), Expect = 7.8e-09
Identity = 33/93 (35.48%), Postives = 51/93 (54.84%), Query Frame = 0 

Query: 11  RCLKVFLRTVVISSIWCLAV-VGRTSASFFFIHIFPGQPHQSLTSGGRPSYFWRGIIWGR 70
           R ++ F + ++   +W + +     +A  F    FPG        G  PS+ WR ++WGR
Sbjct: 47  RNIEDFNQALLAKQVWRVFINPNSLTARIFRARYFPGGTVLDADVGVYPSFVWRSLLWGR 106

Query: 71  ELVVKGGRWRVGNEETIDIYDDQWISRPKTFRM 103
           EL++ G RWRVGN   I IY+D+W+  P  FR+
Sbjct: 107 ELLMAGLRWRVGNGLQISIYEDKWVPLPHLFRI 139

[Close]
BLAST of Lcy01g005440 vs. NCBI nr
Match: XP_024038356.1 (uncharacterized protein LOC112097383 [Citrus clementina])

HSP 1 Score: 70.9 bits (172), Expect = 1.0e-08
Identity = 29/71 (40.85%), Postives = 40/71 (56.34%), Query Frame = 0 

Query: 31  VGRTSASFFFIHIFPGQPHQSLTSGGRPSYFWRGIIWGRELVVKGGRWRVGNEETIDIYD 90
           +G T A       F        + G  PSY WR I+WGRE++ KG RWR+G+ + I I++
Sbjct: 474 LGFTKARVLKARYFNHSSFMEASLGSNPSYIWRSILWGREVLKKGCRWRIGDGKQISIFN 533

Query: 91  DQWISRPKTFR 102
             WI RP TF+
Sbjct: 534 SSWIPRPTTFK 544

[Close]
BLAST of Lcy01g005440 vs. NCBI nr
Match: KAF5447348.1 (hypothetical protein F2P56_032905 [Juglans regia])

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-08
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 0 

Query: 57  RPSYFWRGIIWGRELVVKGGRWRVGNEETIDIYDDQWISRPKTFRMMWT 106
           +PSYFWR I+  R+++VKG RWRVGN  TI+I  D+WI RP TFR+  T
Sbjct: 828 KPSYFWRSIMAARDMIVKGTRWRVGNGATINILQDKWIPRPTTFRVQAT 876

[Close]
BLAST of Lcy01g005440 vs. NCBI nr
Match: XP_018829675.1 (uncharacterized protein LOC108997755 [Juglans regia] >KAF5462683.1 hypothetical protein F2P56_018670 [Juglans regia])

HSP 1 Score: 69.3 bits (168), Expect = 3.0e-08
Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 0 

Query: 44  FPGQPHQSLTSGGRPSYFWRGIIWGRELVVKGGRWRVGNEETIDIYDDQWISRPKTFRMM 103
           FP     +   G +PSY WR I+  R+++VKG RWRVGN  +I+I  D+WI RP TFR+ 
Sbjct: 391 FPHGQFLNAKLGHKPSYIWRSIMAARDVIVKGTRWRVGNGASINILQDKWIPRPTTFRVQ 450

Query: 104 WT 106
            T
Sbjct: 451 AT 452

[Close]
BLAST of Lcy01g005440 vs. NCBI nr
Match: XP_015388578.1 (uncharacterized protein LOC107178209 [Citrus sinensis])

HSP 1 Score: 69.3 bits (168), Expect = 3.0e-08
Identity = 23/47 (48.94%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 55  GGRPSYFWRGIIWGRELVVKGGRWRVGNEETIDIYDDQWISRPKTFR 102
           G  PS+ WR I+WGR++++KG RWR+G+ E + +Y+  W+ RP TFR
Sbjct: 495 GTNPSFIWRSILWGRKIILKGTRWRIGSGEDVQVYNSNWLPRPTTFR 541

[Close]
BLAST of Lcy01g005440 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 43.1 bits (100), Expect = 2.1e-04
Identity = 20/51 (39.22%), Postives = 28/51 (54.90%), Query Frame = 0 

Query: 44  FPGQPHQSLTSGGRPSYFWRGIIWGRELVVKGGRWRVGNEETIDIYDDQWI 95
           FP       + G RPSY WR II GREL+ +G    +G+     ++ D+WI
Sbjct: 94  FPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIGDGIHTKVWLDRWI 144

The following BLAST results are available for this feature:
BLAST of Lcy01g005440 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy01g005440 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A803PEK85.2e-1133.98Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803QJV01.2e-1032.04Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803NHG31.5e-1032.04Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803Q0L52.6e-1033.01Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803PTB07.6e-1036.19Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
BLAST of Lcy01g005440 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_021808571.17.8e-0935.48uncharacterized protein LOC110752263 [Prunus avium][more]
XP_024038356.11.0e-0840.85uncharacterized protein LOC112097383 [Citrus clementina][more]
KAF5447348.11.3e-0859.18hypothetical protein F2P56_032905 [Juglans regia][more]
XP_018829675.13.0e-0848.39uncharacterized protein LOC108997755 [Juglans regia] >KAF5462683.1 hypothetical ... [more]
XP_015388578.13.0e-0848.94uncharacterized protein LOC107178209 [Citrus sinensis][more]
BLAST of Lcy01g005440 vs. TAIR 10
Match NameE-valueIdentityDescription
ATMG00310.12.1e-0439.22RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy01g005440.1Lcy01g005440.1mRNA