Lcy01g005430 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g005430
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	ycf20-like protein
Location	Chr01: 7540336 .. 7542156 (+)
RNA-Seq Expression	Lcy01g005430
Synteny	Lcy01g005430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGACGATTGCCTATCCGATGTCCAAGGTACGGCGCCAAAATCCGCCCACATGGCTGAGCGCCGATTGATGGAAGAGACGAACAGTTCTTGCAGCCAAACCTCCATGGGAGCAGAGTGAAAGATAATCTGAGTGAGAGGTTGCTTGGGCTCGGATACTGATCAGTAAGCCGCTATTCAACCTATTTCATGATTTTGTGGTCAATATCAATTCAGATTTCTCCAATTTCCCCTCTCTGCGAACTGTTGTTTGATTGATAGAATTTTAATTAGGTTTGCTGAAAATTGGTTAAGGCCCTGCATATCGACGACTGAATCGTTATATTTCTGTGTAATTTAGAGTATGCATGAAGGATTGTGGCTAAAAGATTTATTGAAATTGAAAATTTTGATGTTAGGGAGGATTCTTTGTGAAGGAACTGTCAGCTTCAAATAGCAACTGAAAGCATATGAAACTCATTAAGCTTCCGTTCATCTTGTTATCCTCTCTTGGAAATAACCAAGGCCTGAAGGATTAGATGGTGATGATTTCGCTGATTGTAAGAAGATTATGTATAAATAAGCTTTGTTCATCAGTAAAATTACTTGAATGTTGCTTGCAGTTCAAGATAATGTAATGGCAACTCCAATGAGGTTGTTATGCACCCATCCACGAACTATTATTAAGCTTCAATCTCCAAAATATGTGAAAACAAGAGTTTCTGTTCCGGGCCTCGCAGCATGCTTTTACAACACTTATGTGTTCCATGGTCAACTTCACCATCAGTGTTGTTCCTTCTATGTAACCAAACCTTCAGTGCTAAAGAACTTCAAGTAAGTTACTGTGATGGTGGATATCCTATTGTTTACTTATGGTAGTTGTAGTTGCTAGGGTCTAGGTTAGTTATGCAATTCTTATTTGGCGTTAGGAGCATCGATATGTTGAATTTAACGCATCTGATGATTCCCCTCAATTTCAAAGTAGTTCAAGAATGCAAATGATAAAGTCAGTCATGCAGCTTCTTGTTTTCTGCATCTCTCAATCATTGTGCTTTGTGAATTGTACTCTGTAGTTTCCATACTTGGTAGAACACTTAAACTTCACAAGCTCATCACAAAGCATACATAAAAATGTTGTTGGGCCATTGGCAACACAAGGGAATTAATGATCGTATACTTAAGGATTCATTTCAAAGGGCAACGGTGATGGTCATATATGAAAGACAACAGATGGCATGATGTTGAACGAATATTCTCATAGCTCACCACAGGAGTGAACTTTTAAGCTATATTTAAGAATACTTGGATAGAAACTTCATTTTAAGATTAGTCTATGTTTGTAATTTGTTATTATTCTTTTTGGTACAGGAAGATGGCCTTGTCCATTAGGAGCAGTGTGGAAGGGAGTCCATTTGATCCTCCTTCAAATAGCTCCAATGGCAGAACGAGACTGATAAGGATTATTCAAGCTATTCAAACCAAGTTGAATGCGAGAATCAACGAGTTAAGGAAAAATCTTCCATTGAAGATACTCTTCTTCTTGGTTGGGTTTTACAGTGCAACTGCATTTGCAACTGTTATTGGTCAAACAGGTGACTGGGATGTTCTATCTGCTGCATTGGCTGTGGTTATTGTGGAGGGGATTGGGGCCCTCATGTATAGGGCTTCTCTTCCTCTTTTGAACAAGATTAAAGGCCTAATAACCATGTTCAATTATTGGAAGGCTGGGCTTTCCATGGGTCTTTTCTTGGATTCTTTTAAATATGAAATGGATGACATTTTTGGGTTACATAACCTCTTCCATTTATACTTAGAAAATGTATTTCATATATTTTTTTAA

mRNA sequence

ATGAACGACGATTGCCTATCCGATGTCCAAGTTCAAGATAATGTAATGGCAACTCCAATGAGGTTGTTATGCACCCATCCACGAACTATTATTAAGCTTCAATCTCCAAAATATGTGAAAACAAGAGTTTCTGTTCCGGGCCTCGCAGCATGCTTTTACAACACTTATGTGTTCCATGGTCAACTTCACCATCAGTGTTGTTCCTTCTATGTAACCAAACCTTCAGTGCTAAAGAACTTCAAGAAGATGGCCTTGTCCATTAGGAGCAGTGTGGAAGGGAGTCCATTTGATCCTCCTTCAAATAGCTCCAATGGCAGAACGAGACTGATAAGGATTATTCAAGCTATTCAAACCAAGTTGAATGCGAGAATCAACGAGTTAAGGAAAAATCTTCCATTGAAGATACTCTTCTTCTTGGTTGGGTTTTACAGTGCAACTGCATTTGCAACTGTTATTGGTCAAACAGGTGACTGGGATGTTCTATCTGCTGCATTGGCTGTGGTTATTGTGGAGGGGATTGGGGCCCTCATGTATAGGGCTTCTCTTCCTCTTTTGAACAAGATTAAAGGCCTAATAACCATGTTCAATTATTGGAAGGCTGGGCTTTCCATGGGTCTTTTCTTGGATTCTTTTAAATATGAAATGGATGACATTTTTGGGTTACATAACCTCTTCCATTTATACTTAGAAAATGTATTTCATATATTTTTTTAA

Coding sequence (CDS)

ATGAACGACGATTGCCTATCCGATGTCCAAGTTCAAGATAATGTAATGGCAACTCCAATGAGGTTGTTATGCACCCATCCACGAACTATTATTAAGCTTCAATCTCCAAAATATGTGAAAACAAGAGTTTCTGTTCCGGGCCTCGCAGCATGCTTTTACAACACTTATGTGTTCCATGGTCAACTTCACCATCAGTGTTGTTCCTTCTATGTAACCAAACCTTCAGTGCTAAAGAACTTCAAGAAGATGGCCTTGTCCATTAGGAGCAGTGTGGAAGGGAGTCCATTTGATCCTCCTTCAAATAGCTCCAATGGCAGAACGAGACTGATAAGGATTATTCAAGCTATTCAAACCAAGTTGAATGCGAGAATCAACGAGTTAAGGAAAAATCTTCCATTGAAGATACTCTTCTTCTTGGTTGGGTTTTACAGTGCAACTGCATTTGCAACTGTTATTGGTCAAACAGGTGACTGGGATGTTCTATCTGCTGCATTGGCTGTGGTTATTGTGGAGGGGATTGGGGCCCTCATGTATAGGGCTTCTCTTCCTCTTTTGAACAAGATTAAAGGCCTAATAACCATGTTCAATTATTGGAAGGCTGGGCTTTCCATGGGTCTTTTCTTGGATTCTTTTAAATATGAAATGGATGACATTTTTGGGTTACATAACCTCTTCCATTTATACTTAGAAAATGTATTTCATATATTTTTTTAA

Protein sequence

MNDDCLSDVQVQDNVMATPMRLLCTHPRTIIKLQSPKYVKTRVSVPGLAACFYNTYVFHGQLHHQCCSFYVTKPSVLKNFKKMALSIRSSVEGSPFDPPSNSSNGRTRLIRIIQAIQTKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALAVVIVEGIGALMYRASLPLLNKIKGLITMFNYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLENVFHIFF

Homology

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BLAST of Lcy01g005430 vs. ExPASy Swiss-Prot
Match: O80813 (Ycf20-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g65420 PE=2 SV=2)

HSP 1 Score: 110.2 bits (274), Expect = 3.3e-23
Identity = 64/151 (42.38%), Postives = 90/151 (59.60%), Query Frame = 0


Query: 68  SFYVTKPSVLKNFKKMALSIRSSVEGSPFDPPSNSSN----GRTRLIRIIQAIQTKLNAR 127
           SF + +P+    F   AL   SS+ G   +    + +    G TRL RI  A   +L  +
Sbjct: 47  SFQIRRPNRKIAF---ALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIAIAGGKQLLGK 106

Query: 128 INELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALAVVIVEGIGALMYR--AS 187
           IN  RKN P+KI   L+GFY+A A AT++GQTGDWDVL A + V  +EGIG LMY+  +S
Sbjct: 107 INSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSS 166

Query: 188 LPLLNKIKGLITMFNYWKAGLSMGLFLDSFK 213
                K++  +   N+WKAG+ +GLF+D+FK
Sbjct: 167 SMFSGKLQSFVVFMNFWKAGVCLGLFVDAFK 194

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BLAST of Lcy01g005430 vs. ExPASy Swiss-Prot
Match: Q9MUL5 (Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 9.1e-13
Identity = 45/110 (40.91%), Postives = 61/110 (55.45%), Query Frame = 0


Query: 107 TRLIRIIQAIQTKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALA 166
           TRL      I   L+++I     N P+KIL  L+GF+ AT  ATV GQTGDWDVL A + 
Sbjct: 4   TRLTLFFTNIFQLLDSKIQNYSINFPIKILLLLLGFFIATVLATVFGQTGDWDVLVAGIL 63

Query: 167 VVIVEGIGALMYRASLPLLNKIKGL----ITMFNYWKAGLSMGLFLDSFK 213
           V ++E +G  MY        ++  +    +   NY K GL  GLF+D+FK
Sbjct: 64  VAMIEILGNKMYSKKYISKKQVFDISFLSLIGINYIKIGLIFGLFVDAFK 113

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BLAST of Lcy01g005430 vs. ExPASy Swiss-Prot
Match: Q1XDS2 (Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-08
Identity = 35/107 (32.71%), Postives = 59/107 (55.14%), Query Frame = 0


Query: 106 RTRLIRIIQAIQTKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAAL 165
           +TRL      +   LN ++      L   ++  L+GF+ +T  +T+ GQTGDW +++A+L
Sbjct: 3   KTRLSTFFAYLIKNLNNKLYYSLSELTTGLISLLLGFFISTGLSTIPGQTGDWGIIAASL 62

Query: 166 AVVIVEGIGALMYRASLPLLNKIKGLITMFNYWKAGLSMGLFLDSFK 213
            V   E    ++Y +   L  K    I +FN +K G++ GLF+D+FK
Sbjct: 63  IVAATELTSKIVYSSHKQLNIK----INLFNNFKIGITYGLFVDAFK 105

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BLAST of Lcy01g005430 vs. ExPASy Swiss-Prot
Match: P51214 (Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.9e-08
Identity = 33/100 (33.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 113 IQAIQTKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALAVVIVEG 172
           +Q + ++L   +NEL   L    +  L+GF+ +T  +T+ GQTGDW +++A+L V  +E 
Sbjct: 14  VQNLSSRLYYSLNELTAGL----ISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAAIEL 73

Query: 173 IGALMYRASLPLLNKIKGLITMFNYWKAGLSMGLFLDSFK 213
           +  ++Y        K    I + N  K G++ GLF+D+FK
Sbjct: 74  VSKIVYSNK----KKYGVRINLLNNLKIGITYGLFVDAFK 105

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BLAST of Lcy01g005430 vs. ExPASy Swiss-Prot
Match: P72983 (Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1509 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.7e-07
Identity = 35/107 (32.71%), Postives = 56/107 (52.34%), Query Frame = 0


Query: 106 RTRLIRIIQAIQTKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAAL 165
           RTRL  I++    +L+       + + L +L FL GF+  TA AT  GQ   WDV+ AA 
Sbjct: 3   RTRLNTIVEVRGQQLSQFFRNPWRRISLSLLSFLFGFFVGTAVATTAGQNSQWDVVCAAF 62

Query: 166 AVVIVEGIGALMYRASLPLLNKIKGLITMFNYWKAGLSMGLFLDSFK 213
            ++  E +    YR  + + +    ++ +F   K G+S  LFL++FK
Sbjct: 63  ILLFCELVNRWFYRRGVKMGDLQAEVLNIF---KMGVSYSLFLEAFK 106

[Close]

BLAST of Lcy01g005430 vs. ExPASy TrEMBL
Match: A0A6J1H7K4 (uncharacterized protein LOC111460299 OS=Cucurbita moschata OX=3662 GN=LOC111460299 PE=3 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 6.6e-107
Identity = 205/222 (92.34%), Postives = 208/222 (93.69%), Query Frame = 0


Query: 16  MATPMRLLCTHPRTIIKLQSPKYVKTRVSVPGLAACFYNTYVFHGQLHHQCCSFYVTKPS 75
           MA PMRLL T+PRT  KLQSPKY KTRVSVPGLAACFYNTYV HGQLHHQ  SFYVTKPS
Sbjct: 1   MAFPMRLLSTYPRT-SKLQSPKYAKTRVSVPGLAACFYNTYVLHGQLHHQSLSFYVTKPS 60

Query: 76  VLKNFKKMALSIRSSVEGSPFDPPSNSSNGRTRLIRIIQAIQTKLNARINELRKNLPLKI 135
           VLKNFKKMALSIRSSVE SPFDPPSNSSNGRTRL RII AIQTKLNARINELRKNLPLKI
Sbjct: 61  VLKNFKKMALSIRSSVEESPFDPPSNSSNGRTRLTRIISAIQTKLNARINELRKNLPLKI 120

Query: 136 LFFLVGFYSATAFATVIGQTGDWDVLSAALAVVIVEGIGALMYRASLPLLNKIKGLITMF 195
           LFFLVGFYSATAFATVIGQTGDWDVLSAALAV +VEGIGALMYRASLPLLNKIKGLITMF
Sbjct: 121 LFFLVGFYSATAFATVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMF 180

Query: 196 NYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLENVFHIFF 238
           NYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLENV HI +
Sbjct: 181 NYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLENVIHIIY 221

[Close]

BLAST of Lcy01g005430 vs. ExPASy TrEMBL
Match: A0A6J1L1A0 (uncharacterized protein LOC111498957 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498957 PE=3 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 1.6e-105
Identity = 203/222 (91.44%), Postives = 206/222 (92.79%), Query Frame = 0


Query: 16  MATPMRLLCTHPRTIIKLQSPKYVKTRVSVPGLAACFYNTYVFHGQLHHQCCSFYVTKPS 75
           MA PMRLL  +PRT  KLQSPKY KTRVSVPGLAACFYNTYV HGQLHH   SFYVTKPS
Sbjct: 1   MAFPMRLLSPYPRT-SKLQSPKYAKTRVSVPGLAACFYNTYVLHGQLHHHSFSFYVTKPS 60

Query: 76  VLKNFKKMALSIRSSVEGSPFDPPSNSSNGRTRLIRIIQAIQTKLNARINELRKNLPLKI 135
           VLKNFKKMALSIRSSVE SPFDPPSNSSNGRTRL RII AIQTKLNARINELRKNLPLKI
Sbjct: 61  VLKNFKKMALSIRSSVEESPFDPPSNSSNGRTRLTRIISAIQTKLNARINELRKNLPLKI 120

Query: 136 LFFLVGFYSATAFATVIGQTGDWDVLSAALAVVIVEGIGALMYRASLPLLNKIKGLITMF 195
           LFFLVGFYSATAFATVIGQTGDWDVLSAALAV +VEGIGALMYRASLPLLNKIKGLITMF
Sbjct: 121 LFFLVGFYSATAFATVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMF 180

Query: 196 NYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLENVFHIFF 238
           NYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLENV HI +
Sbjct: 181 NYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLENVIHIIY 221

[Close]

BLAST of Lcy01g005430 vs. ExPASy TrEMBL
Match: A0A0A0K9U0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G077990 PE=3 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 5.2e-104
Identity = 197/222 (88.74%), Postives = 207/222 (93.24%), Query Frame = 0


Query: 16  MATPMRLLCTHPRTIIKLQSPKYVKTRVSVPGLAACFYNTYVFHGQLHHQCCSFYVTKPS 75
           MAT MRLL T+PRT  KLQSP Y +TRVSVPGL ACFY+TYV HG LHHQCCSFYVTKPS
Sbjct: 1   MATSMRLLSTYPRT-SKLQSPNYPRTRVSVPGLVACFYDTYVLHGHLHHQCCSFYVTKPS 60

Query: 76  VLKNFKKMALSIRSSVEGSPFDPPSNSSNGRTRLIRIIQAIQTKLNARINELRKNLPLKI 135
           VLKNFKKMALSIR SVEG+PFDPPS++SNGRTRLIRIIQAIQTKLNARINELRKNLPLKI
Sbjct: 61  VLKNFKKMALSIRGSVEGNPFDPPSSNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKI 120

Query: 136 LFFLVGFYSATAFATVIGQTGDWDVLSAALAVVIVEGIGALMYRASLPLLNKIKGLITMF 195
           LFFLVGFYSATAFATVIGQTGDWD+LSAALAVV+VEGIGALMYRASLPLLNKIK LITMF
Sbjct: 121 LFFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDLITMF 180

Query: 196 NYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLENVFHIFF 238
           NYWKAGLSMGLFLDSFK+EMDDIFGLHNLFHLYL NV  I +
Sbjct: 181 NYWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYLHNVIPIIY 221

[Close]

BLAST of Lcy01g005430 vs. ExPASy TrEMBL
Match: A0A1S3CBS0 (ycf20-like protein OS=Cucumis melo OX=3656 GN=LOC103499014 PE=3 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 2.5e-98
Identity = 191/222 (86.04%), Postives = 201/222 (90.54%), Query Frame = 0


Query: 16  MATPMRLLCTHPRTIIKLQSPKYVKTRVSVPGLAACFYNTYVFHGQLHHQCCSFYVTKPS 75
           MAT MRLL T+PRT  KLQSP Y +TRVSVPGL ACF+        LHHQCCSFYVTKPS
Sbjct: 1   MATSMRLLSTYPRT-SKLQSPNYQRTRVSVPGLVACFH--------LHHQCCSFYVTKPS 60

Query: 76  VLKNFKKMALSIRSSVEGSPFDPPSNSSNGRTRLIRIIQAIQTKLNARINELRKNLPLKI 135
           VLKNFKKMALSIR SVEGSPFDPPS++SNGRTRLIRIIQAIQTKLNARINELRKNLP KI
Sbjct: 61  VLKNFKKMALSIRGSVEGSPFDPPSSNSNGRTRLIRIIQAIQTKLNARINELRKNLPFKI 120

Query: 136 LFFLVGFYSATAFATVIGQTGDWDVLSAALAVVIVEGIGALMYRASLPLLNKIKGLITMF 195
           LFFLVGFYSATAFATVIGQTGDWD+LSAALAVV+VEGIGALMYRASLPLLNKIKGLITMF
Sbjct: 121 LFFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKGLITMF 180

Query: 196 NYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLENVFHIFF 238
           NYWKAGLSMGLFLDSFK+EMDDIFG+HNLFHLYL NV  I +
Sbjct: 181 NYWKAGLSMGLFLDSFKFEMDDIFGIHNLFHLYLHNVIRIIY 213

[Close]

BLAST of Lcy01g005430 vs. ExPASy TrEMBL
Match: A0A6J1DQ25 (ycf20-like protein isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022766 PE=3 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.6e-97
Identity = 192/222 (86.49%), Postives = 204/222 (91.89%), Query Frame = 0


Query: 16  MATPMRLLCTHPRTIIKLQSPKYVKTRVSVPGLAACFYNTYVFHGQLHHQCCSFYVTKPS 75
           M TPMR L T+PRTI+ LQSPK V +R+SVPGLA CFY+T+VF G+ HHQC SF V KPS
Sbjct: 1   METPMR-LSTYPRTIM-LQSPKGVTSRLSVPGLAECFYDTHVFCGKHHHQCYSFSVAKPS 60

Query: 76  VLKNFKKMALSIRSSVEGSPFDPPSNSSNGRTRLIRIIQAIQTKLNARINELRKNLPLKI 135
           VLKNFKKMALSIRSSVEGSPFDPP NSSNG TRLIRIIQAIQTKL+A+INELRKNLPLKI
Sbjct: 61  VLKNFKKMALSIRSSVEGSPFDPPPNSSNGGTRLIRIIQAIQTKLDAKINELRKNLPLKI 120

Query: 136 LFFLVGFYSATAFATVIGQTGDWDVLSAALAVVIVEGIGALMYRASLPLLNKIKGLITMF 195
            FFLVGFYSATAFATVIGQTGDWDVLSAALAVV+VEGIGALMYRASLPLLNKIKGLITMF
Sbjct: 121 FFFLVGFYSATAFATVIGQTGDWDVLSAALAVVVVEGIGALMYRASLPLLNKIKGLITMF 180

Query: 196 NYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLENVFHIFF 238
           NYWKAGLSMGLFLDSFKYEMDDIFGLHN F L+LENV HIF+
Sbjct: 181 NYWKAGLSMGLFLDSFKYEMDDIFGLHNFFPLFLENVLHIFY 220

[Close]

BLAST of Lcy01g005430 vs. NCBI nr
Match: KAG6574801.1 (Syntaxin-61, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 401.7 bits (1031), Expect = 4.2e-108
Identity = 207/221 (93.67%), Postives = 209/221 (94.57%), Query Frame = 0


Query: 11  VQDNVMATPMRLLCTHPRTIIKLQSPKYVKTRVSVPGLAACFYNTYVFHGQLHHQCCSFY 70
           VQDNVMA PMRLL T+PRT  KLQSPKY KTRVSVPGLAACFYNTYV HGQLHHQ  SFY
Sbjct: 345 VQDNVMAFPMRLLSTYPRT-SKLQSPKYAKTRVSVPGLAACFYNTYVLHGQLHHQSLSFY 404

Query: 71  VTKPSVLKNFKKMALSIRSSVEGSPFDPPSNSSNGRTRLIRIIQAIQTKLNARINELRKN 130
           VTKPSVLKNFKKMALSIRSSVE SPFDPPSNSSNGRTRL RII AIQTKLNARINELRKN
Sbjct: 405 VTKPSVLKNFKKMALSIRSSVEESPFDPPSNSSNGRTRLTRIISAIQTKLNARINELRKN 464

Query: 131 LPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALAVVIVEGIGALMYRASLPLLNKIKG 190
           LPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALAV +VEGIGALMYRASLPLLNKIKG
Sbjct: 465 LPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKG 524

Query: 191 LITMFNYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLEN 232
           LITMFNYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLEN
Sbjct: 525 LITMFNYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLEN 564

[Close]

BLAST of Lcy01g005430 vs. NCBI nr
Match: XP_022959269.1 (uncharacterized protein LOC111460299 [Cucurbita moschata])

HSP 1 Score: 396.7 bits (1018), Expect = 1.4e-106
Identity = 205/222 (92.34%), Postives = 208/222 (93.69%), Query Frame = 0


Query: 16  MATPMRLLCTHPRTIIKLQSPKYVKTRVSVPGLAACFYNTYVFHGQLHHQCCSFYVTKPS 75
           MA PMRLL T+PRT  KLQSPKY KTRVSVPGLAACFYNTYV HGQLHHQ  SFYVTKPS
Sbjct: 1   MAFPMRLLSTYPRT-SKLQSPKYAKTRVSVPGLAACFYNTYVLHGQLHHQSLSFYVTKPS 60

Query: 76  VLKNFKKMALSIRSSVEGSPFDPPSNSSNGRTRLIRIIQAIQTKLNARINELRKNLPLKI 135
           VLKNFKKMALSIRSSVE SPFDPPSNSSNGRTRL RII AIQTKLNARINELRKNLPLKI
Sbjct: 61  VLKNFKKMALSIRSSVEESPFDPPSNSSNGRTRLTRIISAIQTKLNARINELRKNLPLKI 120

Query: 136 LFFLVGFYSATAFATVIGQTGDWDVLSAALAVVIVEGIGALMYRASLPLLNKIKGLITMF 195
           LFFLVGFYSATAFATVIGQTGDWDVLSAALAV +VEGIGALMYRASLPLLNKIKGLITMF
Sbjct: 121 LFFLVGFYSATAFATVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMF 180

Query: 196 NYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLENVFHIFF 238
           NYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLENV HI +
Sbjct: 181 NYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLENVIHIIY 221

[Close]

BLAST of Lcy01g005430 vs. NCBI nr
Match: XP_038875295.1 (uncharacterized protein LOC120067784 isoform X1 [Benincasa hispida])

HSP 1 Score: 396.0 bits (1016), Expect = 2.3e-106
Identity = 204/230 (88.70%), Postives = 213/230 (92.61%), Query Frame = 0


Query: 8   DVQVQDNVMATPMRLLCTHPRTIIKLQSPKYVKTRVSVPGLAACFYNTYVFHGQLHHQCC 67
           +++VQDNVMA   RLL T+PRT  KLQSP Y KTR SV GL ACFY+TYV HGQLHHQ C
Sbjct: 33  NLRVQDNVMAISTRLLSTYPRT-SKLQSPNYAKTRGSVSGLVACFYDTYVLHGQLHHQYC 92

Query: 68  SFYVTKPSVLKNFKKMALSIRSSVEGSPFDPPSNSSNGRTRLIRIIQAIQTKLNARINEL 127
           S YVTKPSVLKNFKKMALSIR SVEGSPFDPPSN+SNGRTRLIRIIQAIQTKLNARINEL
Sbjct: 93  SCYVTKPSVLKNFKKMALSIRGSVEGSPFDPPSNNSNGRTRLIRIIQAIQTKLNARINEL 152

Query: 128 RKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALAVVIVEGIGALMYRASLPLLNK 187
           RKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALAVV+VEGIGALMYRASLPLLNK
Sbjct: 153 RKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALAVVVVEGIGALMYRASLPLLNK 212

Query: 188 IKGLITMFNYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLENVFHIFF 238
           IKGLITMFNYWKAGLSMGLFLDSFK+EMDDIFGLHNLFHLYLENV HI +
Sbjct: 213 IKGLITMFNYWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYLENVIHIIY 261

[Close]

BLAST of Lcy01g005430 vs. NCBI nr
Match: XP_023548511.1 (uncharacterized protein LOC111807155 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 392.1 bits (1006), Expect = 3.4e-105
Identity = 203/222 (91.44%), Postives = 207/222 (93.24%), Query Frame = 0


Query: 16  MATPMRLLCTHPRTIIKLQSPKYVKTRVSVPGLAACFYNTYVFHGQLHHQCCSFYVTKPS 75
           MA PMRLL T+PRT  KLQSPKY KTRVSVP LAACFYNTYV HGQLHHQ  SFYVTKPS
Sbjct: 1   MAFPMRLLSTYPRT-SKLQSPKYAKTRVSVPCLAACFYNTYVLHGQLHHQSFSFYVTKPS 60

Query: 76  VLKNFKKMALSIRSSVEGSPFDPPSNSSNGRTRLIRIIQAIQTKLNARINELRKNLPLKI 135
           V+KNFKKMALSIRSSVE SPFDPPSNSSNGRTRL RII AIQTKLNARINELRKNLPLKI
Sbjct: 61  VIKNFKKMALSIRSSVEESPFDPPSNSSNGRTRLTRIISAIQTKLNARINELRKNLPLKI 120

Query: 136 LFFLVGFYSATAFATVIGQTGDWDVLSAALAVVIVEGIGALMYRASLPLLNKIKGLITMF 195
           LFFLVGFYSATAFATVIGQTGDWDVLSAALAV +VEGIGALMYRASLPLLNKIKGLITMF
Sbjct: 121 LFFLVGFYSATAFATVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMF 180

Query: 196 NYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLENVFHIFF 238
           NYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLENV HI +
Sbjct: 181 NYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLENVIHIIY 221

[Close]

BLAST of Lcy01g005430 vs. NCBI nr
Match: XP_023006119.1 (uncharacterized protein LOC111498957 isoform X1 [Cucurbita maxima])

HSP 1 Score: 392.1 bits (1006), Expect = 3.4e-105
Identity = 203/222 (91.44%), Postives = 206/222 (92.79%), Query Frame = 0


Query: 16  MATPMRLLCTHPRTIIKLQSPKYVKTRVSVPGLAACFYNTYVFHGQLHHQCCSFYVTKPS 75
           MA PMRLL  +PRT  KLQSPKY KTRVSVPGLAACFYNTYV HGQLHH   SFYVTKPS
Sbjct: 1   MAFPMRLLSPYPRT-SKLQSPKYAKTRVSVPGLAACFYNTYVLHGQLHHHSFSFYVTKPS 60

Query: 76  VLKNFKKMALSIRSSVEGSPFDPPSNSSNGRTRLIRIIQAIQTKLNARINELRKNLPLKI 135
           VLKNFKKMALSIRSSVE SPFDPPSNSSNGRTRL RII AIQTKLNARINELRKNLPLKI
Sbjct: 61  VLKNFKKMALSIRSSVEESPFDPPSNSSNGRTRLTRIISAIQTKLNARINELRKNLPLKI 120

Query: 136 LFFLVGFYSATAFATVIGQTGDWDVLSAALAVVIVEGIGALMYRASLPLLNKIKGLITMF 195
           LFFLVGFYSATAFATVIGQTGDWDVLSAALAV +VEGIGALMYRASLPLLNKIKGLITMF
Sbjct: 121 LFFLVGFYSATAFATVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMF 180

Query: 196 NYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLENVFHIFF 238
           NYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLENV HI +
Sbjct: 181 NYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLENVIHIIY 221

[Close]

BLAST of Lcy01g005430 vs. TAIR 10
Match: AT3G56830.1 (Protein of unknown function (DUF565) )

HSP 1 Score: 174.1 bits (440), Expect = 1.3e-43
Identity = 89/155 (57.42%), Postives = 121/155 (78.06%), Query Frame = 0


Query: 66  CCSFYVTKPSVLKNFKKMA-LSIRSSVEGSPFDPPSNSSNGRT----RLIRIIQAIQTKL 125
           C   +  +P ++++ ++M+  +I+SSV G  FDP S SS+  +    RLI+ IQ +++KL
Sbjct: 36  CHFLHPAQPLLVRHQRRMSWTTIKSSVGGDRFDPASGSSSNNSSRGLRLIKAIQVLRSKL 95

Query: 126 NARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALAVVIVEGIGALMYRA 185
             +I E++K+LP K+ F LVGFYSATAF+T IGQTGDWDVLSA LAV++VE IGALMYRA
Sbjct: 96  LVKIQEIKKDLPKKLFFLLVGFYSATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRA 155

Query: 186 SLPLLNKIKGLITMFNYWKAGLSMGLFLDSFKYEM 216
           S+PL+NK++  ITMFNYWK GL++GLFLDSFKYE+
Sbjct: 156 SIPLINKMRSTITMFNYWKTGLALGLFLDSFKYEV 190

[Close]

BLAST of Lcy01g005430 vs. TAIR 10
Match: AT3G56830.2 (Protein of unknown function (DUF565) )

HSP 1 Score: 169.9 bits (429), Expect = 2.5e-42
Identity = 87/153 (56.86%), Postives = 119/153 (77.78%), Query Frame = 0


Query: 66  CCSFYVTKPSVLKNFKKMA-LSIRSSVEGSPFDPPSNSSNGRT----RLIRIIQAIQTKL 125
           C   +  +P ++++ ++M+  +I+SSV G  FDP S SS+  +    RLI+ IQ +++KL
Sbjct: 36  CHFLHPAQPLLVRHQRRMSWTTIKSSVGGDRFDPASGSSSNNSSRGLRLIKAIQVLRSKL 95

Query: 126 NARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALAVVIVEGIGALMYRA 185
             +I E++K+LP K+ F LVGFYSATAF+T IGQTGDWDVLSA LAV++VE IGALMYRA
Sbjct: 96  LVKIQEIKKDLPKKLFFLLVGFYSATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRA 155

Query: 186 SLPLLNKIKGLITMFNYWKAGLSMGLFLDSFKY 214
           S+PL+NK++  ITMFNYWK GL++GLFLDSFK+
Sbjct: 156 SIPLINKMRSTITMFNYWKTGLALGLFLDSFKF 188

[Close]

BLAST of Lcy01g005430 vs. TAIR 10
Match: AT3G56830.3 (Protein of unknown function (DUF565) )

HSP 1 Score: 169.9 bits (429), Expect = 2.5e-42
Identity = 87/153 (56.86%), Postives = 119/153 (77.78%), Query Frame = 0


Query: 66  CCSFYVTKPSVLKNFKKMA-LSIRSSVEGSPFDPPSNSSNGRT----RLIRIIQAIQTKL 125
           C   +  +P ++++ ++M+  +I+SSV G  FDP S SS+  +    RLI+ IQ +++KL
Sbjct: 36  CHFLHPAQPLLVRHQRRMSWTTIKSSVGGDRFDPASGSSSNNSSRGLRLIKAIQVLRSKL 95

Query: 126 NARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALAVVIVEGIGALMYRA 185
             +I E++K+LP K+ F LVGFYSATAF+T IGQTGDWDVLSA LAV++VE IGALMYRA
Sbjct: 96  LVKIQEIKKDLPKKLFFLLVGFYSATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRA 155

Query: 186 SLPLLNKIKGLITMFNYWKAGLSMGLFLDSFKY 214
           S+PL+NK++  ITMFNYWK GL++GLFLDSFK+
Sbjct: 156 SIPLINKMRSTITMFNYWKTGLALGLFLDSFKF 188

[Close]

BLAST of Lcy01g005430 vs. TAIR 10
Match: AT1G65420.1 (Protein of unknown function (DUF565) )

HSP 1 Score: 110.2 bits (274), Expect = 2.4e-24
Identity = 64/151 (42.38%), Postives = 90/151 (59.60%), Query Frame = 0


Query: 68  SFYVTKPSVLKNFKKMALSIRSSVEGSPFDPPSNSSN----GRTRLIRIIQAIQTKLNAR 127
           SF + +P+    F   AL   SS+ G   +    + +    G TRL RI  A   +L  +
Sbjct: 47  SFQIRRPNRKIAF---ALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIAIAGGKQLLGK 106

Query: 128 INELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALAVVIVEGIGALMYR--AS 187
           IN  RKN P+KI   L+GFY+A A AT++GQTGDWDVL A + V  +EGIG LMY+  +S
Sbjct: 107 INSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSS 166

Query: 188 LPLLNKIKGLITMFNYWKAGLSMGLFLDSFK 213
                K++  +   N+WKAG+ +GLF+D+FK
Sbjct: 167 SMFSGKLQSFVVFMNFWKAGVCLGLFVDAFK 194

The following BLAST results are available for this feature:

BLAST of Lcy01g005430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80813	3.3e-23	42.38	Ycf20-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g65420 PE=2 SV=2	[more]
Q9MUL5	9.1e-13	40.91	Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1	[more]
Q1XDS2	1.8e-08	32.71	Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1	[more]
P51214	8.9e-08	33.00	Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1	[more]
P72983	5.7e-07	32.71	Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN...	[more]

BLAST of Lcy01g005430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H7K4	6.6e-107	92.34	uncharacterized protein LOC111460299 OS=Cucurbita moschata OX=3662 GN=LOC1114602...	[more]
A0A6J1L1A0	1.6e-105	91.44	uncharacterized protein LOC111498957 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0K9U0	5.2e-104	88.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G077990 PE=3 SV=1	[more]
A0A1S3CBS0	2.5e-98	86.04	ycf20-like protein OS=Cucumis melo OX=3656 GN=LOC103499014 PE=3 SV=1	[more]
A0A6J1DQ25	1.6e-97	86.49	ycf20-like protein isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022766 PE=...	[more]

BLAST of Lcy01g005430 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6574801.1	4.2e-108	93.67	Syntaxin-61, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022959269.1	1.4e-106	92.34	uncharacterized protein LOC111460299 [Cucurbita moschata]	[more]
XP_038875295.1	2.3e-106	88.70	uncharacterized protein LOC120067784 isoform X1 [Benincasa hispida]	[more]
XP_023548511.1	3.4e-105	91.44	uncharacterized protein LOC111807155 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023006119.1	3.4e-105	91.44	uncharacterized protein LOC111498957 isoform X1 [Cucurbita maxima]	[more]

BLAST of Lcy01g005430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56830.1	1.3e-43	57.42	Protein of unknown function (DUF565)	[more]
AT3G56830.2	2.5e-42	56.86	Protein of unknown function (DUF565)	[more]
AT3G56830.3	2.5e-42	56.86	Protein of unknown function (DUF565)	[more]
AT1G65420.1	2.4e-24	42.38	Protein of unknown function (DUF565)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007572	Uncharacterised protein family Ycf20	PFAM	PF04483	DUF565	coord: 154..212 e-value: 1.8E-16 score: 60.3
IPR007572	Uncharacterised protein family Ycf20	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 17..221
None	No IPR available	PANTHER	PTHR33787:SF3	YCF20-LIKE PROTEIN	coord: 17..221

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g005430.1	Lcy01g005430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0009607	response to biotic stimulus
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005516	calmodulin binding