Lcy01g005410 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g005410
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase domain-containing protein
Location	Chr01: 7520287 .. 7520796 (-)
RNA-Seq Expression	Lcy01g005410
Synteny	Lcy01g005410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCACATTTCTTTATCTCATCTCCAATTTGCTGATAATACCATTTTCTTTTGTTCTGGGAAAGAGGAGTCCTTTCGAATTTTGAATCATATTTTAGCCTTCTTTGAGGAGCTGTCAGGATCGAGGATAAACAGAGGTAAATGTCAAATCCTAGGCTTAAATTGTGATTCTGAGAAAATTAGAGATTGGGCGAATTTGGTGGGGTGTGACGTGGGTGTTTTCCCTTCCCTTTATTTGGGCCTCCCTTTAGGTCATAATCCAAAAAACACTTCGTTTTGGTCCCCTGTGGTGGAGAAAGTGAGGAAAAAATTAGCTTCTTGGAAGATGAGCTTTTTCTCTAAAGGTGACAGAATGACCCTCATCCAATCAGTCTTGAGCAGGATCCCTGTTTACTTCTTTTCGCTTTTTAGGGCTCCTAGCGGTGTGTGCAGGACTCTGGAGAGACTCATGAGGAATTTCCTGTGGGAAGGGGTTGAAGAGGGGAGGAGTTCGCATCTTGTTAGTTGA

mRNA sequence

ATGGACCACATTTCTTTATCTCATCTCCAATTTGCTGATAATACCATTTTCTTTTGTTCTGGGAAAGAGGAGTCCTTTCGAATTTTGAATCATATTTTAGCCTTCTTTGAGGAGCTGTCAGGATCGAGGATAAACAGAGGTAAATGTCAAATCCTAGGCTTAAATTGTGATTCTGAGAAAATTAGAGATTGGGCGAATTTGGTGGGGTGTGACGTGGGTGTTTTCCCTTCCCTTTATTTGGGCCTCCCTTTAGGTCATAATCCAAAAAACACTTCGTTTTGGTCCCCTGTGGTGGAGAAAGTGAGGAAAAAATTAGCTTCTTGGAAGATGAGCTTTTTCTCTAAAGGTGACAGAATGACCCTCATCCAATCAGTCTTGAGCAGGATCCCTGTTTACTTCTTTTCGCTTTTTAGGGCTCCTAGCGGTGTGTGCAGGACTCTGGAGAGACTCATGAGGAATTTCCTGTGGGAAGGGGTTGAAGAGGGGAGGAGTTCGCATCTTGTTAGTTGA

Coding sequence (CDS)

ATGGACCACATTTCTTTATCTCATCTCCAATTTGCTGATAATACCATTTTCTTTTGTTCTGGGAAAGAGGAGTCCTTTCGAATTTTGAATCATATTTTAGCCTTCTTTGAGGAGCTGTCAGGATCGAGGATAAACAGAGGTAAATGTCAAATCCTAGGCTTAAATTGTGATTCTGAGAAAATTAGAGATTGGGCGAATTTGGTGGGGTGTGACGTGGGTGTTTTCCCTTCCCTTTATTTGGGCCTCCCTTTAGGTCATAATCCAAAAAACACTTCGTTTTGGTCCCCTGTGGTGGAGAAAGTGAGGAAAAAATTAGCTTCTTGGAAGATGAGCTTTTTCTCTAAAGGTGACAGAATGACCCTCATCCAATCAGTCTTGAGCAGGATCCCTGTTTACTTCTTTTCGCTTTTTAGGGCTCCTAGCGGTGTGTGCAGGACTCTGGAGAGACTCATGAGGAATTTCCTGTGGGAAGGGGTTGAAGAGGGGAGGAGTTCGCATCTTGTTAGTTGA

Protein sequence

MDHISLSHLQFADNTIFFCSGKEESFRILNHILAFFEELSGSRINRGKCQILGLNCDSEKIRDWANLVGCDVGVFPSLYLGLPLGHNPKNTSFWSPVVEKVRKKLASWKMSFFSKGDRMTLIQSVLSRIPVYFFSLFRAPSGVCRTLERLMRNFLWEGVEEGRSSHLVS

Homology

[Close]

BLAST of Lcy01g005410 vs. ExPASy TrEMBL
Match: A0A5H2XQW2 (TatD related DNase OS=Prunus dulcis OX=3755 GN=Prudu_862S001100 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 2.1e-46
Identity = 91/167 (54.49%), Postives = 121/167 (72.46%), Query Frame = 0


Query: 2   DHISLSHLQFADNTIFFCSGKEESFRILNHILAFFEELSGSRINRGKCQILGLNCDSEKI 61
           D + +SHLQFAD+TIFF  GKEE +  L  +L  F ++SG +IN+ K  ILG+N   E +
Sbjct: 432 DQVEVSHLQFADDTIFFLDGKEEYWLNLLQMLKLFCDVSGMKINKAKSCILGINFSIETL 491

Query: 62  RDWANLVGCDVGVFPSLYLGLPLGHNPKNTSFWSPVVEKVRKKLASWKMSFFSKGDRMTL 121
            + A   GC+VG +P +YLGLPLG NP+  +FW+PV++KV K+L  WK +  SKG R+TL
Sbjct: 492 NNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVLDKVEKRLQRWKRACLSKGGRLTL 551

Query: 122 IQSVLSRIPVYFFSLFRAPSGVCRTLERLMRNFLWEGVEEGRSSHLV 169
           IQ+VLS IP Y+ SLF+ P GV   +E+LMRNFLWEGVEEG++ HLV
Sbjct: 552 IQAVLSSIPSYYMSLFKMPIGVTAKVEQLMRNFLWEGVEEGKNCHLV 598

[Close]

BLAST of Lcy01g005410 vs. ExPASy TrEMBL
Match: A0A5E4FWN6 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B035884 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 2.1e-46
Identity = 91/167 (54.49%), Postives = 121/167 (72.46%), Query Frame = 0


Query: 2   DHISLSHLQFADNTIFFCSGKEESFRILNHILAFFEELSGSRINRGKCQILGLNCDSEKI 61
           D + +SHLQFAD+TIFF  GKEE +  L  +L  F ++SG +IN+ K  ILG+N   E +
Sbjct: 302 DQVEVSHLQFADDTIFFLDGKEEYWLNLLQMLKLFCDVSGMKINKAKSCILGINFSIETL 361

Query: 62  RDWANLVGCDVGVFPSLYLGLPLGHNPKNTSFWSPVVEKVRKKLASWKMSFFSKGDRMTL 121
            + A   GC+VG +P +YLGLPLG NP+  +FW+PV++KV K+L  WK +  SKG R+TL
Sbjct: 362 NNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVLDKVEKRLQRWKRACLSKGGRLTL 421

Query: 122 IQSVLSRIPVYFFSLFRAPSGVCRTLERLMRNFLWEGVEEGRSSHLV 169
           IQ+VLS IP Y+ SLF+ P GV   +E+LMRNFLWEGVEEG++ HLV
Sbjct: 422 IQAVLSSIPSYYMSLFKMPIGVTAKVEQLMRNFLWEGVEEGKNCHLV 468

[Close]

BLAST of Lcy01g005410 vs. ExPASy TrEMBL
Match: M5X4S0 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa021750mg PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 3.6e-46
Identity = 90/167 (53.89%), Postives = 120/167 (71.86%), Query Frame = 0


Query: 2   DHISLSHLQFADNTIFFCSGKEESFRILNHILAFFEELSGSRINRGKCQILGLNCDSEKI 61
           D + +SHLQFAD+TIF   GKEE +  L  +L  F ++SG +IN+ K  ILG+N  +E +
Sbjct: 412 DQVEVSHLQFADDTIFLLDGKEEYWLNLLQLLKLFCDVSGMKINKAKSCILGINFSTEVL 471

Query: 62  RDWANLVGCDVGVFPSLYLGLPLGHNPKNTSFWSPVVEKVRKKLASWKMSFFSKGDRMTL 121
            + A   GC+VG +P +YLGLPLG NP+  +FW+PV+EKV K+L  WK +  SKG R+TL
Sbjct: 472 NNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVMEKVEKRLQKWKRACLSKGGRLTL 531

Query: 122 IQSVLSRIPVYFFSLFRAPSGVCRTLERLMRNFLWEGVEEGRSSHLV 169
           IQ+VLS IP Y+ SLF+ P GV   +E+LMRNFLWEG+EEG+  HLV
Sbjct: 532 IQAVLSSIPSYYMSLFKMPIGVAAKVEQLMRNFLWEGLEEGKKCHLV 578

[Close]

BLAST of Lcy01g005410 vs. ExPASy TrEMBL
Match: M5VS59 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa016504mg PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 4.6e-46
Identity = 89/167 (53.29%), Postives = 121/167 (72.46%), Query Frame = 0


Query: 2   DHISLSHLQFADNTIFFCSGKEESFRILNHILAFFEELSGSRINRGKCQILGLNCDSEKI 61
           D + +SHLQFAD+TIF   GKEE +  L  +L  F ++SG +IN+ K  ILG+N  +E +
Sbjct: 663 DQVEVSHLQFADDTIFLLDGKEEYWLNLLQLLKLFCDVSGMKINKAKSCILGINFSTEAL 722

Query: 62  RDWANLVGCDVGVFPSLYLGLPLGHNPKNTSFWSPVVEKVRKKLASWKMSFFSKGDRMTL 121
            + A   GC+VG +P +YLGLPLG NP+  +FW+PV++KV K+L  WK +  SKG R+TL
Sbjct: 723 NNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVMDKVEKRLQKWKRACLSKGGRLTL 782

Query: 122 IQSVLSRIPVYFFSLFRAPSGVCRTLERLMRNFLWEGVEEGRSSHLV 169
           IQ+VLS IP Y+ SLF+ P GV   +E+LMRNFLWEG+EEG++ HLV
Sbjct: 783 IQAVLSSIPSYYMSLFKMPIGVAAKVEQLMRNFLWEGLEEGKNCHLV 829

[Close]

BLAST of Lcy01g005410 vs. ExPASy TrEMBL
Match: M5WKV4 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa015607mg PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.0e-45
Identity = 88/167 (52.69%), Postives = 121/167 (72.46%), Query Frame = 0


Query: 2   DHISLSHLQFADNTIFFCSGKEESFRILNHILAFFEELSGSRINRGKCQILGLNCDSEKI 61
           D + +SHLQFAD+TIF   GKEE +  L  +L  F E+SG +IN+ K  ILG+N  ++ +
Sbjct: 419 DQVEVSHLQFADDTIFLLDGKEEYWLNLLQLLKLFCEVSGMKINKAKSCILGINFSTDAL 478

Query: 62  RDWANLVGCDVGVFPSLYLGLPLGHNPKNTSFWSPVVEKVRKKLASWKMSFFSKGDRMTL 121
            + A   GC+VG +P +YLGLPLG NP+  +FW+PV++KV K+L  WK +  SKG R+TL
Sbjct: 479 NNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVMDKVEKRLQKWKRACLSKGGRLTL 538

Query: 122 IQSVLSRIPVYFFSLFRAPSGVCRTLERLMRNFLWEGVEEGRSSHLV 169
           IQ+VLS IP Y+ SLF+ P GV   +E+LMRNFLWEG+E+G++ HLV
Sbjct: 539 IQAVLSSIPSYYMSLFKMPIGVAAKVEQLMRNFLWEGLEDGKNCHLV 585

[Close]

BLAST of Lcy01g005410 vs. NCBI nr
Match: VVA31869.1 (Hypothetical predicted protein, partial [Prunus dulcis])

HSP 1 Score: 195.3 bits (495), Expect = 4.3e-46
Identity = 91/167 (54.49%), Postives = 121/167 (72.46%), Query Frame = 0


Query: 2   DHISLSHLQFADNTIFFCSGKEESFRILNHILAFFEELSGSRINRGKCQILGLNCDSEKI 61
           D + +SHLQFAD+TIFF  GKEE +  L  +L  F ++SG +IN+ K  ILG+N   E +
Sbjct: 302 DQVEVSHLQFADDTIFFLDGKEEYWLNLLQMLKLFCDVSGMKINKAKSCILGINFSIETL 361

Query: 62  RDWANLVGCDVGVFPSLYLGLPLGHNPKNTSFWSPVVEKVRKKLASWKMSFFSKGDRMTL 121
            + A   GC+VG +P +YLGLPLG NP+  +FW+PV++KV K+L  WK +  SKG R+TL
Sbjct: 362 NNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVLDKVEKRLQRWKRACLSKGGRLTL 421

Query: 122 IQSVLSRIPVYFFSLFRAPSGVCRTLERLMRNFLWEGVEEGRSSHLV 169
           IQ+VLS IP Y+ SLF+ P GV   +E+LMRNFLWEGVEEG++ HLV
Sbjct: 422 IQAVLSSIPSYYMSLFKMPIGVTAKVEQLMRNFLWEGVEEGKNCHLV 468

[Close]

BLAST of Lcy01g005410 vs. NCBI nr
Match: BBN69274.1 (TatD related DNase [Prunus dulcis])

HSP 1 Score: 195.3 bits (495), Expect = 4.3e-46
Identity = 91/167 (54.49%), Postives = 121/167 (72.46%), Query Frame = 0


Query: 2   DHISLSHLQFADNTIFFCSGKEESFRILNHILAFFEELSGSRINRGKCQILGLNCDSEKI 61
           D + +SHLQFAD+TIFF  GKEE +  L  +L  F ++SG +IN+ K  ILG+N   E +
Sbjct: 432 DQVEVSHLQFADDTIFFLDGKEEYWLNLLQMLKLFCDVSGMKINKAKSCILGINFSIETL 491

Query: 62  RDWANLVGCDVGVFPSLYLGLPLGHNPKNTSFWSPVVEKVRKKLASWKMSFFSKGDRMTL 121
            + A   GC+VG +P +YLGLPLG NP+  +FW+PV++KV K+L  WK +  SKG R+TL
Sbjct: 492 NNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVLDKVEKRLQRWKRACLSKGGRLTL 551

Query: 122 IQSVLSRIPVYFFSLFRAPSGVCRTLERLMRNFLWEGVEEGRSSHLV 169
           IQ+VLS IP Y+ SLF+ P GV   +E+LMRNFLWEGVEEG++ HLV
Sbjct: 552 IQAVLSSIPSYYMSLFKMPIGVTAKVEQLMRNFLWEGVEEGKNCHLV 598

[Close]

BLAST of Lcy01g005410 vs. NCBI nr
Match: XP_009335445.1 (PREDICTED: uncharacterized protein LOC103928158 [Pyrus x bretschneideri])

HSP 1 Score: 194.5 bits (493), Expect = 7.3e-46
Identity = 88/167 (52.69%), Postives = 118/167 (70.66%), Query Frame = 0


Query: 2   DHISLSHLQFADNTIFFCSGKEESFRILNHILAFFEELSGSRINRGKCQILGLNCDSEKI 61
           + + +SHLQFAD+TIFF +  E+ +  L  +L  F  +SG +IN+ KC + G+N D EK+
Sbjct: 497 ERVEISHLQFADDTIFFLAEDEDVWNNLLEVLNLFCTISGLKINKAKCSMAGINSDCEKL 556

Query: 62  RDWANLVGCDVGVFPSLYLGLPLGHNPKNTSFWSPVVEKVRKKLASWKMSFFSKGDRMTL 121
           +  A+  GC+VG +P  YLGLPLG  PK   FW PVVEK+ K+L SWK +F SKG R+TL
Sbjct: 557 KGMADSWGCEVGSWPIKYLGLPLGGRPKALMFWDPVVEKMEKRLQSWKKAFLSKGGRLTL 616

Query: 122 IQSVLSRIPVYFFSLFRAPSGVCRTLERLMRNFLWEGVEEGRSSHLV 169
           IQ VL  +P+Y+ SLF+ P GV   LE+LM+ FLWEGVEEG+ +HLV
Sbjct: 617 IQFVLGSLPIYYMSLFKIPCGVIGRLEKLMKGFLWEGVEEGKKNHLV 663

[Close]

BLAST of Lcy01g005410 vs. NCBI nr
Match: BBN69746.1 (VIRB2-interacting protein 2 [Prunus dulcis])

HSP 1 Score: 191.8 bits (486), Expect = 4.8e-45
Identity = 89/166 (53.61%), Postives = 116/166 (69.88%), Query Frame = 0


Query: 4   ISLSHLQFADNTIFFCSGKEESFRILNHILAFFEELSGSRINRGKCQILGLNCDSEKIRD 63
           + +SHLQFAD+TIFF   KEE +  L  IL  F  +SG  IN+ KC ++G+N D   + +
Sbjct: 434 VEISHLQFADDTIFFIEDKEEYWNNLLQILELFCFVSGMTINKSKCSLVGINLDDGMVNE 493

Query: 64  WANLVGCDVGVFPSLYLGLPLGHNPKNTSFWSPVVEKVRKKLASWKMSFFSKGDRMTLIQ 123
            A   GCDVGV+P LYLGLPLG NP+   FW PVVEKV  +L  WK +  SKG R+T+IQ
Sbjct: 494 MAGAWGCDVGVWPMLYLGLPLGGNPRAIKFWDPVVEKVENRLQKWKRACLSKGGRLTMIQ 553

Query: 124 SVLSRIPVYFFSLFRAPSGVCRTLERLMRNFLWEGVEEGRSSHLVS 170
           +VL  IP+Y+ SLFR P GV   +E+LMR+FLWEG+ +G+S+H VS
Sbjct: 554 AVLCSIPIYYMSLFRIPIGVANRIEKLMRDFLWEGL-DGKSNHAVS 598

[Close]

BLAST of Lcy01g005410 vs. NCBI nr
Match: VVA21938.1 (Hypothetical predicted protein, partial [Prunus dulcis])

HSP 1 Score: 191.8 bits (486), Expect = 4.8e-45
Identity = 89/166 (53.61%), Postives = 116/166 (69.88%), Query Frame = 0


Query: 4   ISLSHLQFADNTIFFCSGKEESFRILNHILAFFEELSGSRINRGKCQILGLNCDSEKIRD 63
           + +SHLQFAD+TIFF   KEE +  L  IL  F  +SG  IN+ KC ++G+N D   + +
Sbjct: 614 VEISHLQFADDTIFFIEDKEEYWNNLLQILELFCFVSGMTINKSKCSLVGINLDDGMVNE 673

Query: 64  WANLVGCDVGVFPSLYLGLPLGHNPKNTSFWSPVVEKVRKKLASWKMSFFSKGDRMTLIQ 123
            A   GCDVGV+P LYLGLPLG NP+   FW PVVEKV  +L  WK +  SKG R+T+IQ
Sbjct: 674 MAGAWGCDVGVWPMLYLGLPLGGNPRAIKFWDPVVEKVENRLQKWKRACLSKGGRLTMIQ 733

Query: 124 SVLSRIPVYFFSLFRAPSGVCRTLERLMRNFLWEGVEEGRSSHLVS 170
           +VL  IP+Y+ SLFR P GV   +E+LMR+FLWEG+ +G+S+H VS
Sbjct: 734 AVLCSIPIYYMSLFRIPIGVANRIEKLMRDFLWEGL-DGKSNHAVS 778

[Close]

BLAST of Lcy01g005410 vs. TAIR 10
Match: AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 68.9 bits (167), Expect = 4.3e-12
Identity = 32/88 (36.36%), Postives = 47/88 (53.41%), Query Frame = 0


Query: 73  GVFPSLYLGLPLGHNPKNTSFWSPVVEKVRKKLASWKMSFFSKGDRMTLIQSVLSRIPVY 132
           G  P  YLGLPL      TS + P+VEK+R ++  W     S   R+ LI SV+  +  +
Sbjct: 21  GALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNF 80

Query: 133 FFSLFRAPSGVCRTLERLMRNFLWEGVE 161
           + S FR PS   + ++ +  +FLW G E
Sbjct: 81  WMSAFRLPSACIKEIDSICSSFLWSGPE 108

The following BLAST results are available for this feature:

BLAST of Lcy01g005410 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy01g005410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5H2XQW2	2.1e-46	54.49	TatD related DNase OS=Prunus dulcis OX=3755 GN=Prudu_862S001100 PE=4 SV=1	[more]
A0A5E4FWN6	2.1e-46	54.49	Reverse transcriptase domain-containing protein (Fragment) OS=Prunus dulcis OX=3...	[more]
M5X4S0	3.6e-46	53.89	Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=...	[more]
M5VS59	4.6e-46	53.29	Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=...	[more]
M5WKV4	1.0e-45	52.69	Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=...	[more]

BLAST of Lcy01g005410 vs. NCBI nr


Match Name	E-value	Identity	Description
VVA31869.1	4.3e-46	54.49	Hypothetical predicted protein, partial [Prunus dulcis]	[more]
BBN69274.1	4.3e-46	54.49	TatD related DNase [Prunus dulcis]	[more]
XP_009335445.1	7.3e-46	52.69	PREDICTED: uncharacterized protein LOC103928158 [Pyrus x bretschneideri]	[more]
BBN69746.1	4.8e-45	53.61	VIRB2-interacting protein 2 [Prunus dulcis]	[more]
VVA21938.1	4.8e-45	53.61	Hypothetical predicted protein, partial [Prunus dulcis]	[more]

BLAST of Lcy01g005410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G24255.1	4.3e-12	36.36	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 5..158
None	No IPR available	PANTHER	PTHR33116:SF47	REVERSE TRANSCRIPTASE DOMAIN, ZINC FINGER, CCHC-TYPE-RELATED	coord: 5..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g005410.1	Lcy01g005410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0016740	transferase activity