Lcy01g005320 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g005320
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	50S ribosomal protein L3
Location	Chr01: 7375962 .. 7378114 (-)
RNA-Seq Expression	Lcy01g005320
Synteny	Lcy01g005320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGCCAGTCCTCTCAATCCCAGTTCTTCTTCTTCTTCCTTCTTCTTCATCTTCTTCTTCCCTTCTTCTTATGAATCACTGAAACCAGAGAAGAAGAAATGTCGATCATATCATTTTCTTCTGCTTCAACCTCAACCAGACATCCAATTTTCACTAACAATGCTTCTTCTTCATCTTCATCTCCATCCGTTTCTTCATCTCTGAGACTACGAACTTCTTTCCTCGCCCTTCCTCTCAAATCCCACCAGAGCAGCAACCTCCGTCTCCAATTTCCGAGGCAAAGAACCACCAGACGCACTAACAATGGCCTATCTGTTTGTATGAGCATGGAGGCCGGCATTGGAGTAATGGCCACCAAGCTCGGTATGATGAGCTTCTTCGAGCCGGACGGCAAGGTCGTCCCTGTGACGGTGGTCGGTTTCAAGGAAGGCAACATCGTCACGCAGGTTAAGACGGATGCGACCGACGGCTACAGTGCCGTTCAGGTTGGGTACCGTAGGGTTAGGGATCGGAAATTGACGAAACCGGAGCTAGGGCATCTCGAGAAAGCTGGAGCGATTCCTATGCGCCATTTGCAGGAGTTTCGCCTTGAGTCTGTTGATGGATTTGAGCCCAATCAGCGCTTGGTTTTCAATGAACTTTTCAAGGAAGGCGATCTGGTTGATGTCTCGGGCATTACAATTGGAAAGGGATTTCAAGGTTTTGTGTTTCTTGCTTATTCTGTTTGAAGTCTGTGTTTAATTCATTAGCTACGAAATTGCTTTGGTGTTCTGTTTTTCCTCTGAGCTTCTGGTTTTTGTTCTGTGCCTGCATAATGTTGGAGTTTGAATTTGGGCATGCTCAGGAAGGATTAAACATGAACTTGCATTGATATTTTTGCTGTTTGAATACAAAATTACATATACAATTCCAAAGCCAGAACCTATCCTCCATGAAAAAAAAAAGCTGTTTAATTTTTCTAAGTACCCAAGTATTCCATGTTAGGATATGCCATCTAATCTCAAAGGCTTTATTTCCTATGCTGAAACAAAGTTCTGTGAGAATTATAAATCTTTTGTTAGTTTTGTGTATGGATAAGGATACCTGTGCTCTCTTGGCAAGCCTCCATAAGATTGTGCTTACATCTTGATATGCATGTTAAACTATTTAATATACTCTTAAGACTCTCCCTTCACATATAGGTTCAGGGTTTAGGTACTAATGCTCAACAATTATTTCAAGGATTTGAACTCAAAACCTTACCCTATGAAATCACCATTAGACATTAGACATGAGAGCTTAAGTTAATACTTTATGGTAGATTTTCATCATTTAATATGTTCTCAACACCCCTTGTGTGTAAACTTTGATATTAATTTGAATTAAAAACGCCAACTTAAGCATAACTCAGTTGGTTAGGGTATGTATCATTGGCCAAAATGTCAAAGGTTCAAATCTCTACCTCTACATGTTGTTGAACTTAAAGAAATATTGATCTACAAGACCCAACACGTGGACTATTAATGTAAAGTTGGAAGGAAACGAATAAAGACGAATGTCCATTTTATGTGTTCTCCACTCTTTTCAACACTAGTCTAATTGATTTCTTATACCTTTCTCCCTCTTCTAATTTTTCTCTAGGTGGAATCAAGAGGCACAACTTCAAAAGAGGTCCGATGACCCACGGTTCCAAGAGCCACAGGGCACTCGGATCGATCGGTGCAGGAACTACACCCGGTCGCGTGTACAAGGGGAAGAAGATGCCTGGAAGGATGGGAGGAACCAAGAGAAAGATCAGAAAACTCAAGATTGTGAAAATTGATGACGACCTTAATGTCGTGATGATCAAAGGCGCCGTCCCTGGTAAGCCAGGAAACCTTCTTCGAATAGCTCCTGCAAAGATAGTTGGAAAGAACATTCCTAAGAATTAGCTTTAGATCATCTGTTGAATTTGTGCTTTTTCAATTCTTTTTTGTTTGTTGAGTTGTTGCATCTCTTCAACTGGTTATTTGTATTATGATAAGTTTACAGTTGAGTTCTCCAGAAAATGTTTGATCCATTCCCAGTTTTTCATCAGCTGGTGATTACAAGTAATGGGCTCTGTTGATAAATTAAAAAGTTGTTTTTATTAAGGTTTATGTTTATATACCCAAAAAATGTTGTAATTTGAAGTAG

mRNA sequence

GGGCCAGTCCTCTCAATCCCAGTTCTTCTTCTTCTTCCTTCTTCTTCATCTTCTTCTTCCCTTCTTCTTATGAATCACTGAAACCAGAGAAGAAGAAATGTCGATCATATCATTTTCTTCTGCTTCAACCTCAACCAGACATCCAATTTTCACTAACAATGCTTCTTCTTCATCTTCATCTCCATCCGTTTCTTCATCTCTGAGACTACGAACTTCTTTCCTCGCCCTTCCTCTCAAATCCCACCAGAGCAGCAACCTCCGTCTCCAATTTCCGAGGCAAAGAACCACCAGACGCACTAACAATGGCCTATCTGTTTGTATGAGCATGGAGGCCGGCATTGGAGTAATGGCCACCAAGCTCGGTATGATGAGCTTCTTCGAGCCGGACGGCAAGGTCGTCCCTGTGACGGTGGTCGGTTTCAAGGAAGGCAACATCGTCACGCAGGTTAAGACGGATGCGACCGACGGCTACAGTGCCGTTCAGGTTGGGTACCGTAGGGTTAGGGATCGGAAATTGACGAAACCGGAGCTAGGGCATCTCGAGAAAGCTGGAGCGATTCCTATGCGCCATTTGCAGGAGTTTCGCCTTGAGTCTGTTGATGGATTTGAGCCCAATCAGCGCTTGGTTTTCAATGAACTTTTCAAGGAAGGCGATCTGGTTGATGTCTCGGGCATTACAATTGGAAAGGGATTTCAAGGTGGAATCAAGAGGCACAACTTCAAAAGAGGTCCGATGACCCACGGTTCCAAGAGCCACAGGGCACTCGGATCGATCGGTGCAGGAACTACACCCGGTCGCGTGTACAAGGGGAAGAAGATGCCTGGAAGGATGGGAGGAACCAAGAGAAAGATCAGAAAACTCAAGATTGTGAAAATTGATGACGACCTTAATGTCGTGATGATCAAAGGCGCCGTCCCTGGTAAGCCAGGAAACCTTCTTCGAATAGCTCCTGCAAAGATAGTTGGAAAGAACATTCCTAAGAATTAGCTTTAGATCATCTGTTGAATTTGTGCTTTTTCAATTCTTTTTTGTTTGTTGAGTTGTTGCATCTCTTCAACTGGTTATTTGTATTATGATAAGTTTACAGTTGAGTTCTCCAGAAAATGTTTGATCCATTCCCAGTTTTTCATCAGCTGGTGATTACAAGTAATGGGCTCTGTTGATAAATTAAAAAGTTGTTTTTATTAAGGTTTATGTTTATATACCCAAAAAATGTTGTAATTTGAAGTAG

Coding sequence (CDS)

ATGTCGATCATATCATTTTCTTCTGCTTCAACCTCAACCAGACATCCAATTTTCACTAACAATGCTTCTTCTTCATCTTCATCTCCATCCGTTTCTTCATCTCTGAGACTACGAACTTCTTTCCTCGCCCTTCCTCTCAAATCCCACCAGAGCAGCAACCTCCGTCTCCAATTTCCGAGGCAAAGAACCACCAGACGCACTAACAATGGCCTATCTGTTTGTATGAGCATGGAGGCCGGCATTGGAGTAATGGCCACCAAGCTCGGTATGATGAGCTTCTTCGAGCCGGACGGCAAGGTCGTCCCTGTGACGGTGGTCGGTTTCAAGGAAGGCAACATCGTCACGCAGGTTAAGACGGATGCGACCGACGGCTACAGTGCCGTTCAGGTTGGGTACCGTAGGGTTAGGGATCGGAAATTGACGAAACCGGAGCTAGGGCATCTCGAGAAAGCTGGAGCGATTCCTATGCGCCATTTGCAGGAGTTTCGCCTTGAGTCTGTTGATGGATTTGAGCCCAATCAGCGCTTGGTTTTCAATGAACTTTTCAAGGAAGGCGATCTGGTTGATGTCTCGGGCATTACAATTGGAAAGGGATTTCAAGGTGGAATCAAGAGGCACAACTTCAAAAGAGGTCCGATGACCCACGGTTCCAAGAGCCACAGGGCACTCGGATCGATCGGTGCAGGAACTACACCCGGTCGCGTGTACAAGGGGAAGAAGATGCCTGGAAGGATGGGAGGAACCAAGAGAAAGATCAGAAAACTCAAGATTGTGAAAATTGATGACGACCTTAATGTCGTGATGATCAAAGGCGCCGTCCCTGGTAAGCCAGGAAACCTTCTTCGAATAGCTCCTGCAAAGATAGTTGGAAAGAACATTCCTAAGAATTAG

Protein sequence

MSIISFSSASTSTRHPIFTNNASSSSSSPSVSSSLRLRTSFLALPLKSHQSSNLRLQFPRQRTTRRTNNGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTDATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQRLVFNELFKEGDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN

Homology

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BLAST of Lcy01g005320 vs. ExPASy Swiss-Prot
Match: O80360 (50S ribosomal protein L3, chloroplastic (Fragment) OS=Nicotiana tabacum OX=4097 GN=RPL3 PE=2 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 3.8e-109
Identity = 205/269 (76.21%), Postives = 231/269 (85.87%), Query Frame = 0


Query: 32  SSSLRLRTSFL-ALP---LKSHQSSNLRLQFPRQRTTRRTNNGLSVCMSMEAGIGVMATK 91
           ++ L LR+ FL  LP   LK+H+ ++L +            +  S+  S+EAG+GVMATK
Sbjct: 3   TTPLTLRSPFLHRLPLRALKTHKPTSLHI------------SKSSISASLEAGVGVMATK 62

Query: 92  LGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTDATDGYSAVQVGYRRVRDRKLTKPELGH 151
           LGMMSFFE  G VVPVTVVGF+EGNIVTQ+KT+ATDGY+AVQVGYRRVRDRKLTKPE+GH
Sbjct: 63  LGMMSFFEESGTVVPVTVVGFREGNIVTQIKTEATDGYNAVQVGYRRVRDRKLTKPEMGH 122

Query: 152 LEKAGAIPMRHLQEFRLESVDGFEPNQRLVFNELFKEGDLVDVSGITIGKGFQGGIKRHN 211
           LEK+G IP+RHLQEFRL+S+DGFE  Q+L F ELFKEGDLVDVSG TIGKGFQGGIKRHN
Sbjct: 123 LEKSGIIPLRHLQEFRLQSIDGFEVTQKLDFGELFKEGDLVDVSGTTIGKGFQGGIKRHN 182

Query: 212 FKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDDDLNVV 271
           FKRG MTHGSKSHR LGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDD LN++
Sbjct: 183 FKRGQMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDDQLNII 242

Query: 272 MIKGAVPGKPGNLLRIAPAKIVGKNIPKN 297
           MIKGA+PGKPGNLLRIAPAKIVGKNIPK+
Sbjct: 243 MIKGALPGKPGNLLRIAPAKIVGKNIPKS 259

[Close]

BLAST of Lcy01g005320 vs. ExPASy Swiss-Prot
Match: P82191 (50S ribosomal protein L3, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL3 PE=1 SV=2)

HSP 1 Score: 392.5 bits (1007), Expect = 4.2e-108
Identity = 215/297 (72.39%), Postives = 241/297 (81.14%), Query Frame = 0


Query: 2   SIISFSSASTSTRHPIFTNNASSSSSSPSVSSSLRLRTSFLALPLKSHQSSNLRLQFPRQ 61
           S  ++SS+  S   P   + +SS + +P V  SLRL TSF+  P   +Q   L+   P +
Sbjct: 13  SSCTYSSSKRSLSSPKAVSLSSSVNGTPKV-QSLRLSTSFVCSP---NQIIKLKSVSPSR 72

Query: 62  RT-TRRTNNGLSV-CMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKT 121
            T  RR   GL +  MS++AGIGVM TKLGMMSFFE DG VVPVTV+GFKEGNIVTQVKT
Sbjct: 73  STQLRRAVGGLEIKMMSVDAGIGVMGTKLGMMSFFEEDGTVVPVTVIGFKEGNIVTQVKT 132

Query: 122 DATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQRLVFN 181
           ++TDGY+AVQVGY R+RDRKLT PE GHL KAG IPMRHLQEFRL SVD F P+Q+L+F 
Sbjct: 133 ESTDGYNAVQVGYERLRDRKLTMPERGHLNKAGVIPMRHLQEFRLVSVDDFTPSQKLLFE 192

Query: 182 ELFKEGDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGK 241
           ELFKEGD+VD+SG TIGKGFQGGIKRHNFKRG MTHGSKSHRALGSIGAGTTPG VYKGK
Sbjct: 193 ELFKEGDMVDISGTTIGKGFQGGIKRHNFKRGLMTHGSKSHRALGSIGAGTTPGHVYKGK 252

Query: 242 KMPGRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 297
           KMPGRMGGTK KIRKLKI+KID DL VVMIKGAVPGKPGNLLR+APAKIVGKNIPKN
Sbjct: 253 KMPGRMGGTKTKIRKLKIMKIDTDLRVVMIKGAVPGKPGNLLRLAPAKIVGKNIPKN 305

[Close]

BLAST of Lcy01g005320 vs. ExPASy Swiss-Prot
Match: Q9SKX4 (50S ribosomal protein L3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL3A PE=2 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 6.7e-106
Identity = 204/273 (74.73%), Postives = 226/273 (82.78%), Query Frame = 0


Query: 27  SSPSVSSSLRLRTSFLA---LPLKSHQSSNLRLQFPRQRTTRRTNNGLSVCMSMEAGIGV 86
           S PS+ +   L +S      LP KS  SS L    P+ R          V  SMEAGIGV
Sbjct: 9   SFPSLLNKTTLSSSLFTPTFLPAKS--SSLLIKSSPKTR--------FVVSSSMEAGIGV 68

Query: 87  MATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTDATDGYSAVQVGYRRVRDRKLTKP 146
           M +KLGMMSFFE DG VVPVTVVGF+EGNIVTQ+KT ATDGY AVQ+GYRRVRD+KLTKP
Sbjct: 69  MGSKLGMMSFFEEDGTVVPVTVVGFREGNIVTQIKTLATDGYDAVQIGYRRVRDKKLTKP 128

Query: 147 ELGHLEKAGAIPMRHLQEFRLESVDGFEPNQRLVFNELFKEGDLVDVSGITIGKGFQGGI 206
           E GHL+KAG IPMRHLQEFRL +++GFEPNQ+LVF+E+FKEGDLVDV+G TIGKGFQGGI
Sbjct: 129 ETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVFDEIFKEGDLVDVAGTTIGKGFQGGI 188

Query: 207 KRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDDD 266
           KRH+FKRG MTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGT+ KIRKLKIVK+D +
Sbjct: 189 KRHHFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTRTKIRKLKIVKVDKE 248

Query: 267 LNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 297
           LNVVMIKGA+PGKPGNLLRI PAKIVG NIPKN
Sbjct: 249 LNVVMIKGALPGKPGNLLRITPAKIVGVNIPKN 271

[Close]

BLAST of Lcy01g005320 vs. ExPASy Swiss-Prot
Match: B1XJT9 (50S ribosomal protein L3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=rplC PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 2.9e-64
Identity = 124/213 (58.22%), Postives = 165/213 (77.46%), Query Frame = 0


Query: 81  IGVMATKLGMMSFFEPD-GKVVPVTVVGFKEGN-IVTQVKTDATDGYSAVQVGYRRVRDR 140
           +G++ TKLGM   F+ + G  +PVTVV  + G   VTQ+KT  TDGY++VQ+GY  V+++
Sbjct: 3   LGILGTKLGMTQIFDNETGTAIPVTVV--QAGPCTVTQIKTSETDGYTSVQIGYGDVKEK 62

Query: 141 KLTKPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQRLVFNELFKEGDLVDVSGITIGKG 200
            LTKP+LGHL+KA A P+RHL+E+RL+ V G+E  Q +  N +F+ G +VDVSG TIG+G
Sbjct: 63  NLTKPQLGHLKKADAAPLRHLKEYRLDDVSGYELGQAITAN-IFEAGQVVDVSGNTIGRG 122

Query: 201 FQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIV 260
           F G  KRHNFKRG MTHGSK+HR  GS GAGTTPGRVY GK+M GR GGTK  +RKL++V
Sbjct: 123 FAGYQKRHNFKRGNMTHGSKNHRLPGSTGAGTTPGRVYPGKRMAGRYGGTKITVRKLEVV 182

Query: 261 KIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGK 292
           ++D++ N+++IKGA+PGK GNLL IAP+ IVG+
Sbjct: 183 RVDEEKNLLLIKGAIPGKAGNLLSIAPSNIVGQ 212

[Close]

BLAST of Lcy01g005320 vs. ExPASy Swiss-Prot
Match: B0C1D3 (50S ribosomal protein L3 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rplC PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.4e-63
Identity = 121/213 (56.81%), Postives = 161/213 (75.59%), Query Frame = 0


Query: 81  IGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNI-VTQVKTDATDGYSAVQVGYRRVRDRK 140
           +G++ TKLGM   F+  G+ +PVTVV  + G   VTQ+KT  TDGY+A+Q+GY    ++ 
Sbjct: 3   VGILGTKLGMTQVFDEAGRAIPVTVV--QAGPCPVTQIKTAQTDGYTAIQIGYGSTTEKA 62

Query: 141 LTKPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQRLVFNELFKEGDLVDVSGITIGKGF 200
           LT+PELGHL+K+G+ P+RHLQE+RL  V  +E  Q  +  +LF EG LVD+SG +IG+GF
Sbjct: 63  LTRPELGHLKKSGSTPVRHLQEYRLADVSEYELGQS-ISADLFSEGQLVDISGTSIGRGF 122

Query: 201 QGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVK 260
            G  KRHNF+RGPM HGSK+HRA GS GAGTTPGR+Y GK+M G+MG  K+ IRKL +V+
Sbjct: 123 AGYQKRHNFRRGPMGHGSKNHRAPGSTGAGTTPGRIYPGKRMAGQMGNVKKTIRKLTVVR 182

Query: 261 IDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKN 293
           +D + NV++IKG+VPGKPG LL I PA IVG++
Sbjct: 183 VDAERNVLLIKGSVPGKPGALLNIQPATIVGES 212

[Close]

BLAST of Lcy01g005320 vs. ExPASy TrEMBL
Match: A0A6J1KIF2 (50S ribosomal protein L3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111494241 PE=3 SV=1)

HSP 1 Score: 531.2 bits (1367), Expect = 2.8e-147
Identity = 277/296 (93.58%), Postives = 283/296 (95.61%), Query Frame = 0


Query: 1   MSIISFSSASTSTRHPIFTNNASSSSSSPSVSSSLRLRTSFLALPLKSHQSSNLRLQFPR 60
           MS I FSSASTS RHPIFTNNASSS      SSSLRLRTSFLALPLKSH +SNLRLQFP 
Sbjct: 1   MSAIPFSSASTSIRHPIFTNNASSS------SSSLRLRTSFLALPLKSHHNSNLRLQFPA 60

Query: 61  QRTTRRTNNGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTD 120
           QRTTRRTNNG+ VCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKT+
Sbjct: 61  QRTTRRTNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTE 120

Query: 121 ATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQRLVFNE 180
           ATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRL +VDGFEPNQRLVFNE
Sbjct: 121 ATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNE 180

Query: 181 LFKEGDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKK 240
           LFKEGDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKK
Sbjct: 181 LFKEGDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKK 240

Query: 241 MPGRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 297
           MPGRMGGTKRKIRKLKIVK+DD+LNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 MPGRMGGTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 290

[Close]

BLAST of Lcy01g005320 vs. ExPASy TrEMBL
Match: A0A6J1HNL2 (50S ribosomal protein L3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111464551 PE=3 SV=1)

HSP 1 Score: 529.3 bits (1362), Expect = 1.1e-146
Identity = 276/296 (93.24%), Postives = 282/296 (95.27%), Query Frame = 0


Query: 1   MSIISFSSASTSTRHPIFTNNASSSSSSPSVSSSLRLRTSFLALPLKSHQSSNLRLQFPR 60
           MS I FSSASTS RHPIFTNNASSS      SSSLRLRTSFLALPLKSH +SNLRLQFP 
Sbjct: 1   MSAIPFSSASTSIRHPIFTNNASSS------SSSLRLRTSFLALPLKSHHNSNLRLQFPA 60

Query: 61  QRTTRRTNNGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTD 120
           QRTTR TNNG+ VCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKT+
Sbjct: 61  QRTTRHTNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTE 120

Query: 121 ATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQRLVFNE 180
           ATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRL +VDGFEPNQRLVFNE
Sbjct: 121 ATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNE 180

Query: 181 LFKEGDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKK 240
           LFKEGDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKK
Sbjct: 181 LFKEGDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKK 240

Query: 241 MPGRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 297
           MPGRMGGTKRKIRKLKIVK+DD+LNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 MPGRMGGTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 290

[Close]

BLAST of Lcy01g005320 vs. ExPASy TrEMBL
Match: A0A6J1KXN5 (50S ribosomal protein L3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111499138 PE=3 SV=1)

HSP 1 Score: 528.5 bits (1360), Expect = 1.8e-146
Identity = 273/296 (92.23%), Postives = 285/296 (96.28%), Query Frame = 0


Query: 1   MSIISFSSASTSTRHPIFTNNASSSSSSPSVSSSLRLRTSFLALPLKSHQSSNLRLQFPR 60
           MS+IS SSASTS RHPIFTNNASSSS     SSSL+LRTSFLALPLKSH+++N+R QFPR
Sbjct: 1   MSVISISSASTSKRHPIFTNNASSSSP----SSSLKLRTSFLALPLKSHRNNNVRFQFPR 60

Query: 61  QRTTRRTNNGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTD 120
            RTTRR N+GLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQ+KT+
Sbjct: 61  PRTTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTE 120

Query: 121 ATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQRLVFNE 180
           ATDGYSAVQVGYRRVRDRKLTKPE+GHL+KAGAIPMRHLQEFRLES+DGFEPNQRLVFNE
Sbjct: 121 ATDGYSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNE 180

Query: 181 LFKEGDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKK 240
           LFKEGDLVDVSG TIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKK
Sbjct: 181 LFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKK 240

Query: 241 MPGRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 297
           MPGRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 MPGRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292

[Close]

BLAST of Lcy01g005320 vs. ExPASy TrEMBL
Match: A0A6J1H630 (50S ribosomal protein L3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111460446 PE=3 SV=1)

HSP 1 Score: 527.7 bits (1358), Expect = 3.1e-146
Identity = 273/296 (92.23%), Postives = 284/296 (95.95%), Query Frame = 0


Query: 1   MSIISFSSASTSTRHPIFTNNASSSSSSPSVSSSLRLRTSFLALPLKSHQSSNLRLQFPR 60
           MS+IS S ASTS RHPIFTNNASSSS     SSSL+LRTSFLALPLKSH+++NLR QFPR
Sbjct: 1   MSVISISLASTSNRHPIFTNNASSSSP----SSSLKLRTSFLALPLKSHRNNNLRFQFPR 60

Query: 61  QRTTRRTNNGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTD 120
            RTTRR N+GLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQ+KT+
Sbjct: 61  PRTTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTE 120

Query: 121 ATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQRLVFNE 180
           ATDGYSAVQVGYRRVRDRKLTKPE+GHL+KAGAIPMRHLQEFRLES+DGFEPNQRLVFNE
Sbjct: 121 ATDGYSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNE 180

Query: 181 LFKEGDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKK 240
           LFKEGDLVDVSG TIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKK
Sbjct: 181 LFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKK 240

Query: 241 MPGRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 297
           MPGRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 MPGRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292

[Close]

BLAST of Lcy01g005320 vs. ExPASy TrEMBL
Match: A0A1S3CBR5 (50S ribosomal protein L3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499009 PE=3 SV=1)

HSP 1 Score: 525.4 bits (1352), Expect = 1.5e-145
Identity = 275/296 (92.91%), Postives = 283/296 (95.61%), Query Frame = 0


Query: 1   MSIISFSSASTSTRHPIFTNNASSSSSSPSVSSSLRLRTSFLALPLKSHQSSNLRLQFPR 60
           MSIISFSSAS ST+HPIFTNN SSSSSS   SSSL LRTSFLALPLKSH  +NLR  FP 
Sbjct: 1   MSIISFSSASASTKHPIFTNNPSSSSSS---SSSLTLRTSFLALPLKSHHKNNLRFHFPT 60

Query: 61  QRTTRRTNNGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTD 120
           +RTTRR ++GLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKT+
Sbjct: 61  RRTTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTE 120

Query: 121 ATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQRLVFNE 180
           ATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQRLVFNE
Sbjct: 121 ATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQRLVFNE 180

Query: 181 LFKEGDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKK 240
           LFKEGDLVDVSG TIGKGFQGGIKRHNFKRGPM+HGSKSHRALGSIGAGTTPGRVYKGKK
Sbjct: 181 LFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKK 240

Query: 241 MPGRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 297
           MPGRMGGTKRKIRKLKIVKID+DLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 MPGRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 293

[Close]

BLAST of Lcy01g005320 vs. NCBI nr
Match: XP_022999904.1 (50S ribosomal protein L3, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 531.2 bits (1367), Expect = 5.8e-147
Identity = 277/296 (93.58%), Postives = 283/296 (95.61%), Query Frame = 0


Query: 1   MSIISFSSASTSTRHPIFTNNASSSSSSPSVSSSLRLRTSFLALPLKSHQSSNLRLQFPR 60
           MS I FSSASTS RHPIFTNNASSS      SSSLRLRTSFLALPLKSH +SNLRLQFP 
Sbjct: 1   MSAIPFSSASTSIRHPIFTNNASSS------SSSLRLRTSFLALPLKSHHNSNLRLQFPA 60

Query: 61  QRTTRRTNNGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTD 120
           QRTTRRTNNG+ VCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKT+
Sbjct: 61  QRTTRRTNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTE 120

Query: 121 ATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQRLVFNE 180
           ATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRL +VDGFEPNQRLVFNE
Sbjct: 121 ATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNE 180

Query: 181 LFKEGDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKK 240
           LFKEGDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKK
Sbjct: 181 LFKEGDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKK 240

Query: 241 MPGRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 297
           MPGRMGGTKRKIRKLKIVK+DD+LNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 MPGRMGGTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 290

[Close]

BLAST of Lcy01g005320 vs. NCBI nr
Match: KAG6574805.1 (50S ribosomal protein L3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013387.1 50S ribosomal protein L3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 530.0 bits (1364), Expect = 1.3e-146
Identity = 274/296 (92.57%), Postives = 285/296 (96.28%), Query Frame = 0


Query: 1   MSIISFSSASTSTRHPIFTNNASSSSSSPSVSSSLRLRTSFLALPLKSHQSSNLRLQFPR 60
           MS+IS SSASTS RHPIFTNNASSSS     SSSL+LRTSFLALPLKSH+++NLR QFPR
Sbjct: 1   MSVISISSASTSNRHPIFTNNASSSSP----SSSLKLRTSFLALPLKSHRNNNLRFQFPR 60

Query: 61  QRTTRRTNNGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTD 120
            RTTRR N+GLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQ+KT+
Sbjct: 61  PRTTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTE 120

Query: 121 ATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQRLVFNE 180
           ATDGYSAVQVGYRRVRDRKLTKPE+GHL+KAGAIPMRHLQEFRLES+DGFEPNQRLVFNE
Sbjct: 121 ATDGYSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNE 180

Query: 181 LFKEGDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKK 240
           LFKEGDLVDVSG TIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKK
Sbjct: 181 LFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKK 240

Query: 241 MPGRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 297
           MPGRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 MPGRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292

[Close]

BLAST of Lcy01g005320 vs. NCBI nr
Match: XP_022964564.1 (50S ribosomal protein L3, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 529.3 bits (1362), Expect = 2.2e-146
Identity = 276/296 (93.24%), Postives = 282/296 (95.27%), Query Frame = 0


Query: 1   MSIISFSSASTSTRHPIFTNNASSSSSSPSVSSSLRLRTSFLALPLKSHQSSNLRLQFPR 60
           MS I FSSASTS RHPIFTNNASSS      SSSLRLRTSFLALPLKSH +SNLRLQFP 
Sbjct: 1   MSAIPFSSASTSIRHPIFTNNASSS------SSSLRLRTSFLALPLKSHHNSNLRLQFPA 60

Query: 61  QRTTRRTNNGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTD 120
           QRTTR TNNG+ VCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKT+
Sbjct: 61  QRTTRHTNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTE 120

Query: 121 ATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQRLVFNE 180
           ATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRL +VDGFEPNQRLVFNE
Sbjct: 121 ATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNE 180

Query: 181 LFKEGDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKK 240
           LFKEGDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKK
Sbjct: 181 LFKEGDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKK 240

Query: 241 MPGRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 297
           MPGRMGGTKRKIRKLKIVK+DD+LNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 MPGRMGGTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 290

[Close]

BLAST of Lcy01g005320 vs. NCBI nr
Match: XP_023515139.1 (50S ribosomal protein L3, chloroplastic-like [Cucurbita pepo subsp. pepo] >KAG7026080.1 50S ribosomal protein L3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 528.9 bits (1361), Expect = 2.9e-146
Identity = 276/296 (93.24%), Postives = 282/296 (95.27%), Query Frame = 0


Query: 1   MSIISFSSASTSTRHPIFTNNASSSSSSPSVSSSLRLRTSFLALPLKSHQSSNLRLQFPR 60
           MS I FSSASTS RHPIFTNNASSS      SSSLRLRTSFLALPLKSH +SNL LQFP 
Sbjct: 1   MSAIPFSSASTSIRHPIFTNNASSS------SSSLRLRTSFLALPLKSHHNSNLSLQFPA 60

Query: 61  QRTTRRTNNGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTD 120
           QRTTRRTNNG+ VCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKT+
Sbjct: 61  QRTTRRTNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTE 120

Query: 121 ATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQRLVFNE 180
           ATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRL +VDGFEPNQRLVFNE
Sbjct: 121 ATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNE 180

Query: 181 LFKEGDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKK 240
           LFKEGDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKK
Sbjct: 181 LFKEGDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKK 240

Query: 241 MPGRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 297
           MPGRMGGTKRKIRKLKIVK+DD+LNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 MPGRMGGTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 290

[Close]

BLAST of Lcy01g005320 vs. NCBI nr
Match: XP_023006396.1 (50S ribosomal protein L3, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 528.5 bits (1360), Expect = 3.8e-146
Identity = 273/296 (92.23%), Postives = 285/296 (96.28%), Query Frame = 0


Query: 1   MSIISFSSASTSTRHPIFTNNASSSSSSPSVSSSLRLRTSFLALPLKSHQSSNLRLQFPR 60
           MS+IS SSASTS RHPIFTNNASSSS     SSSL+LRTSFLALPLKSH+++N+R QFPR
Sbjct: 1   MSVISISSASTSKRHPIFTNNASSSSP----SSSLKLRTSFLALPLKSHRNNNVRFQFPR 60

Query: 61  QRTTRRTNNGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTD 120
            RTTRR N+GLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQ+KT+
Sbjct: 61  PRTTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTE 120

Query: 121 ATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQRLVFNE 180
           ATDGYSAVQVGYRRVRDRKLTKPE+GHL+KAGAIPMRHLQEFRLES+DGFEPNQRLVFNE
Sbjct: 121 ATDGYSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNE 180

Query: 181 LFKEGDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKK 240
           LFKEGDLVDVSG TIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKK
Sbjct: 181 LFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKK 240

Query: 241 MPGRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 297
           MPGRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 MPGRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292

[Close]

BLAST of Lcy01g005320 vs. TAIR 10
Match: AT2G43030.1 (Ribosomal protein L3 family protein )

HSP 1 Score: 385.2 bits (988), Expect = 4.8e-107
Identity = 204/273 (74.73%), Postives = 226/273 (82.78%), Query Frame = 0


Query: 27  SSPSVSSSLRLRTSFLA---LPLKSHQSSNLRLQFPRQRTTRRTNNGLSVCMSMEAGIGV 86
           S PS+ +   L +S      LP KS  SS L    P+ R          V  SMEAGIGV
Sbjct: 9   SFPSLLNKTTLSSSLFTPTFLPAKS--SSLLIKSSPKTR--------FVVSSSMEAGIGV 68

Query: 87  MATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTDATDGYSAVQVGYRRVRDRKLTKP 146
           M +KLGMMSFFE DG VVPVTVVGF+EGNIVTQ+KT ATDGY AVQ+GYRRVRD+KLTKP
Sbjct: 69  MGSKLGMMSFFEEDGTVVPVTVVGFREGNIVTQIKTLATDGYDAVQIGYRRVRDKKLTKP 128

Query: 147 ELGHLEKAGAIPMRHLQEFRLESVDGFEPNQRLVFNELFKEGDLVDVSGITIGKGFQGGI 206
           E GHL+KAG IPMRHLQEFRL +++GFEPNQ+LVF+E+FKEGDLVDV+G TIGKGFQGGI
Sbjct: 129 ETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVFDEIFKEGDLVDVAGTTIGKGFQGGI 188

Query: 207 KRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDDD 266
           KRH+FKRG MTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGT+ KIRKLKIVK+D +
Sbjct: 189 KRHHFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTRTKIRKLKIVKVDKE 248

Query: 267 LNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 297
           LNVVMIKGA+PGKPGNLLRI PAKIVG NIPKN
Sbjct: 249 LNVVMIKGALPGKPGNLLRITPAKIVGVNIPKN 271

[Close]

BLAST of Lcy01g005320 vs. TAIR 10
Match: AT3G17465.1 (ribosomal protein L3 plastid )

HSP 1 Score: 142.1 bits (357), Expect = 7.1e-34
Identity = 82/206 (39.81%), Postives = 124/206 (60.19%), Query Frame = 0


Query: 82  GVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTDATDGYSAVQVGYRRVRDRKLT 141
           G++A K GM + ++  GK +P++++ + + NIV+QVKT   +G  A+Q+G  + + + L+
Sbjct: 78  GIIAVKCGMTALWDKWGKRIPISIL-WVDDNIVSQVKTVEKEGIFALQIGCGQKKPKHLS 137

Query: 142 KPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQRLVFNELFKEGDLVDVSGITIGKGFQG 201
           K  +GH    G    R L+EF + + D   P    +    F  G  VDV+GIT GKGFQG
Sbjct: 138 KAVVGHFRAQGVPLKRKLREFPV-TEDALLPVGTSLGVRHFVPGQYVDVTGITRGKGFQG 197

Query: 202 GIKRHNFKRGPMTHG-SKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKI 261
            +KRH F   P +HG S SHR+ GS G    PG+V+KG+KM GRMG  +R ++ + + KI
Sbjct: 198 CMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMAGRMGADQRTVKNVWVYKI 257

Query: 262 DDDLNVVMIKGAVPGKPGNLLRIAPA 287
           D   N++ ++G VPG  GN + I  A
Sbjct: 258 DPARNLMWVRGQVPGAEGNFVFIKDA 281

The following BLAST results are available for this feature:

BLAST of Lcy01g005320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80360	3.8e-109	76.21	50S ribosomal protein L3, chloroplastic (Fragment) OS=Nicotiana tabacum OX=4097 ...	[more]
P82191	4.2e-108	72.39	50S ribosomal protein L3, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL3 PE=...	[more]
Q9SKX4	6.7e-106	74.73	50S ribosomal protein L3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL...	[more]
B1XJT9	2.9e-64	58.22	50S ribosomal protein L3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR...	[more]
B0C1D3	1.4e-63	56.81	50S ribosomal protein L3 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 G...	[more]

BLAST of Lcy01g005320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KIF2	2.8e-147	93.58	50S ribosomal protein L3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1HNL2	1.1e-146	93.24	50S ribosomal protein L3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1KXN5	1.8e-146	92.23	50S ribosomal protein L3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1H630	3.1e-146	92.23	50S ribosomal protein L3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A1S3CBR5	1.5e-145	92.91	50S ribosomal protein L3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499009 ...	[more]

BLAST of Lcy01g005320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022999904.1	5.8e-147	93.58	50S ribosomal protein L3, chloroplastic-like [Cucurbita maxima]	[more]
KAG6574805.1	1.3e-146	92.57	50S ribosomal protein L3, chloroplastic, partial [Cucurbita argyrosperma subsp. ...	[more]
XP_022964564.1	2.2e-146	93.24	50S ribosomal protein L3, chloroplastic-like [Cucurbita moschata]	[more]
XP_023515139.1	2.9e-146	93.24	50S ribosomal protein L3, chloroplastic-like [Cucurbita pepo subsp. pepo] >KAG70...	[more]
XP_023006396.1	3.8e-146	92.23	50S ribosomal protein L3, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of Lcy01g005320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43030.1	4.8e-107	74.73	Ribosomal protein L3 family protein	[more]
AT3G17465.1	7.1e-34	39.81	ribosomal protein L3 plastid	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000597	Ribosomal protein L3	PFAM	PF00297	Ribosomal_L3	coord: 176..262 e-value: 5.3E-18 score: 65.1
IPR019927	Ribosomal protein L3, bacterial/organelle-type	TIGRFAM	TIGR03625	TIGR03625	coord: 82..283 e-value: 6.0E-74 score: 246.2
IPR019927	Ribosomal protein L3, bacterial/organelle-type	PANTHER	PTHR11229	50S RIBOSOMAL PROTEIN L3	coord: 75..295
IPR019927	Ribosomal protein L3, bacterial/organelle-type	HAMAP	MF_01325_B	Ribosomal_L3_B	coord: 80..287 score: 35.696674
None	No IPR available	GENE3D	2.40.30.10	Translation factors	coord: 208..288 e-value: 7.1E-21 score: 76.4
None	No IPR available	GENE3D	3.30.160.810		coord: 113..172 e-value: 1.8E-20 score: 75.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 211..248
None	No IPR available	PANTHER	PTHR11229:SF16	50S RIBOSOMAL PROTEIN L3-1, CHLOROPLASTIC	coord: 75..295
IPR019926	Ribosomal protein L3, conserved site	PROSITE	PS00474	RIBOSOMAL_L3	coord: 182..205
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 80..292

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g005320.1	Lcy01g005320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome