Lcy01g005290 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g005290
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNA polymerase sigma factor
Location	Chr01: 7353076 .. 7357733 (+)
RNA-Seq Expression	Lcy01g005290
Synteny	Lcy01g005290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCAGTCAACTCTTCAATTCACCATCTCCGAAACCCTTCCTCAATCTTCCATTTTCCAGTTTCCAATGAAACCCTTTTCATATTCATCACATTTTCGCCTCTTCCCCTTCTGGGTAATCGCCGGAGTTCAATTTTGAATGCATTCTTCTGTGTCCGCCATAGTTGCAGAGTAGCAGAACCCAGTTGGAGAACGAAGAAGAACAAGGCGATGTCGTGTTTACTTCCCCAATTCAAGTGCCATCCTGAAACATTCTCAATCCAATTTAAGACCACGGCCATCACGATTACAACCACGGCTAATTATTCTCACCATCAAAGCTTTCTTCCCACTGCCAATTCCAGTTACAGTGAGTGTTTTACTCTGTCGTTCTCTCTTTTTCGACCTTTTGTTTTGTTGTCTTCAAATGGGTTTTTGCTGTTTTGTGTTGCTCGATTGTCAAGCTGGGCTAAAATGGGTTGTGTTTAGTTGGTTAGTATTAGTTCAGCCAGATGTTCAAGTTTTTGAGTTGGATTGCTGGGATTGTTGTCTTGAGATTCTTTGTTTTTGGAGGCCATCACTTGTTTGCAAGGATTTAGAAATGTGGTTGTTTAGCGTCTAAGTTGTGGTTTGCATTAAAGCATTTTCCAGGTGGTGTTGATGTTGATGTTGTTATTGTATCTGATAAAGATTGAGGCTTAAATTTCTCTTTTCTAATAATGGTGTGCAAGTTTTGAAAGGTAGAAGGTTCCTCATGCTATTGAAATACTATGTTTTGTGCTCCATCTGCCATAGACATGTGGTTTATTAATCTCTGCTTGGCCATTTTGGCCATATGGTGCTCAATTAAGTGATTGGGAAATATGTCGAATCCAGTTTTCAGAGAACAAATTATAGTAAAAAAAGAAAAAAGAAAAAAAAAAAAGAAAGAGCCTCCATAGCCAAATAATCATGGAAGTGGTTTTTTAAACCATTCATTCAATTTGTCTATACCTTACCCAAATTATCATCAATGGCGTTTTTTCCGTAGTTCAATAACAAGTGGGGTGGAGGATTCAAATCTATGACATATTGGTCGAGGGAATATGTCTTAACCAGTTGAGCTATGTTCGGGTTGGTTAGGTATGGTGTAGGCGTGTTGGTGTGAATTAGAATATGGTCACAACACTACAAATCCAAACGGATTTAGTATGACTTTGGAGCTCTAGAAAGATCAATCAAAGACCTCTTTTCCTCTCTTTAAAAAATCAGCTACCTGTTTTCATATCAATGTTGAGTTGGCATCTTGTATCTACAGGGAGTATTGATTCCCTCTTGTTAAAGTAGAATGCAGAAAGAAAGTCCCAAGTAAATGAACTTTTGATTTCTTCTTGTGCTGGATTGTAATAGAGTAAGAAGCGAAGGCTTTCTGTGTCAATTTCTACTTTTATTTGAAACGCACTCTTAACCCAGCTTATTTTCCAGTAAGGTTTTCGTCTATATGATTCAAATTTGATAGAAGGAATTATATAATATTGATGATCCATCATTACAAAATCTATAACCAAGTTCATTGAGTTGAATGTTTGTGCAGACAGCAACATAGATTTTGTTGAAAACTTTTCTTATAATAATTCTTGAATCATGCAGCTAGAGTCAGAGATCCCCATAGTTTACGGACACAATGTATCTTGTCTGCAGCATCACCACCAACATCGACTGGAACAGCTACAACATTGAATGTGGATCGACTTAAATTGCCTCCTTTTGATACTAACACCGACTCAGTCTCTGCAGAAAGACTAAGATCATATCTAGGTGCAGTTGAATCGAGCCTAGCCTCAACTCTTCTTACCAGTGAGGAGGCTACGATAGCAGCTGCCGCAGCTGAGGCAGTTACTCTTGCAAAAGCAGCTGTCAAGGTTGCAAAGGATGCAGCTCTTCTGGTTAATAACAGCAACTCTTCCAGAACAGGAACAAAATCTCAATCTTCTCCCAAATCTGATGCTTTACATTTCAAGTGGGCTCAATTTATGGAATCCGAAAGGGCCGATATAATAGGAGAGCCAGTTGGAGTTAATAATCGCCCTGCGGAAGGTGATGCTTTGGAACACAGCATAGCAGAATCTGATGACATGGAGCCAAAATCTGAAGAACTTGAACTTTTACAGGATGAACTCTCTAAGAGTATAGCTGTAAGATCAAAGCGTCAAACAGAACGAAAAGCCAGAAGAACTAGAGCAGCAGAGAAGACTGGTACTAGTGTAGTGTCATTGAAGTCTGGTTCTAGCAGCCGAAAGAAGCGTAATTCTTTACAAGAAGTGGACTACTCTGACCCATTGCGTTATTTAAGAGCAACTACCAGCACTTCTAGACTTCTTACCGCAACTGAAGAACTTGAACTGTCAGAAGGAATTCAGGTTTGATTTTCATCCATTTAACCGTTTCCGAAAATCAAGTCTTTCTACTGGATCAAAGACCACATTGCATTTGGGAAAGATAAAATTGATTTGCAAGTAATAACAAAATTAAATCAACTCATCCATGCCTTCATTAAATTCAGCATTCAGAACTCAGTTTTACTTTACAGTCGTTACTAAATCTGGATTTGTTTGTTTCTAAATTCTAACCAAGAAACATCATGTCAAGTAACTTTTGTAATTCATCACAACTGGATATAATTTTCAAGATTCATTGGGATTGGAAAAGGTGAAGCAAATGAAGTGGATATACTCAAACCAAGGAAAATGAATGTAGCTTGATCCTATTTTCTTTAAGACCTAGCACTCTTCAATTTCAAAGAATCGATAATATTGCAACCTCAGTGAAAGGGCCCGTAGCACTATTAGTGTAAAATTACTGATAGCACTATTATGTTCGTTAAAACTTCCAATAAGTAGTCCGATCCAGCTTCTAAAAAGAATCTGGTTGCAGTTTCCTTCCTTGAATTTGATTCTCTAATGGAATGCATAAAATGATGCTATTTGTCAACATCAATGGTTCTTTAAATGGTGTTTTTGGGTCAATATCCCGATTGATTCGTTATTTTCGTGTATTTTGTTTGATTGCTGACATTTGTTCCAACTATTTCCTAATCCAGGACTTACTGAAACTAGAAAGGCTCCAGGAGGAGCTTGCAGAACGGTATGGGAACGAGCCAACCTTTGCTCAATGGGCAGCTGCGGCTGGAGTCAATCAGAGGACGCTGAGAAAGCGTCTAAACTATGGTACTTTTTGTAAGGACAAAATGATAAAAAGCAACATTCGTCTTGTCATTTCGATTGCGAAAAATTATCAGGGAGCTGGGATGAATCTCCAGGATCTAGTTCAGGTACTTTTTCATTGTTGCACGCCAGCTGAACTGATTGTAAATGGAAACTGAAATTATGAATGCCTTGTTTTAATTTGAATTAGTCATTGCTTGTGTTCCTGACACGCAGGAAGGATGTCGAGGTCTTGTACGAGGTGCAGAGAAGTTTGATGCTTCAAAAGGCTTCAAGTTTTCAACCTATGCTCATTGGTGGATAAAGCAGGCGGTTCGGAAATCTCTTTCTGATCAGTCCAGGACTATTCGCTTGCCAGTATGTTTCTTTTCGTCATAATTTCTTTGAGTAAAAAAGAATAAATTGCTTTGTCAAATTCAATATAGAACAACAAAAGGGAGAAAAAATATAACCTACGAAAATCCCAATGAACATACTAATTGAAGAGATTTCGTTATTCAAACTTCTCCAATAATCAACATTGATGAATGCGCAGTTTCACATGGTGGAAGCAACTTATAGGGTGAAGGAGGCTAGAAAGCAATTATACAGTGAGAATGGAAGACATCCTGATGATGAAGAAATTGCCGAAGCAGCCGGGCTGTCGATGAAGAGGCTTGCTGCAGTATTAATGACTCCGAAAGCACCCCGATCGCTAGAGCAGAAAATCGGGATCAACCAAAATCTCAAACCTTCGGTCCGTCTTATCTCTATTCAGATTTGGTTCTTTCTCATTGCGATATCACCATCTTTAACCTATTTGATTCTCATGCTCATTTCCAGGAAGTCATTTCCGACCCCGAAGCGGAAACTTCAGAAGATCTTCTGATAAAACAATTCATGAAGCAGGATCTCGAAAAGGTACTCGACTCCCTTAATCCAAGAGAGAGACAAGTAATTAGATGGAGGTTTGGGATGGAAGATGGCAGGATGAAAACATTGCAGGAAATAGGAGAAATAATGGGTGTAAGTAGGGAAAGAATTAGACAAATTGAGTCATGTGCTTTCAGAAAACTCAAAAACAAGAAGAGAACTAAACATTTGCAGCAGTATCTGATGTCATGATGAGTCTCCATCAGATTCAAGAGTTACATTCCTCCAAAAGTATCTATTATCTGATATGAGGTTTAAACAAGGCTTGTTCTTTCTTTCTTTCTTTTTTCTTTTTCCCTTTCTTTCTGTAACATATATTACTATGCATCTTCTTTCTCATTTTCAGTATAGAGTAGTGTCTGATTGTTTACAAAATAATAGGTACTTTCTGTTCATACATATTCAATTTTAAATCAAGCAATCTCTCTTAATCCATGATTGTGGTCTGGATCAGTCTTTTTGTACCATTTTCAGATTTTGCTGTCTAATTAGGACCTGACTTGAACAGGATTTGTTTTATAAGTTGTACGATTGTCCTTTGAGTTCTAAGGAGATTTTGTTGTCCA

mRNA sequence

ATCAGTCAACTCTTCAATTCACCATCTCCGAAACCCTTCCTCAATCTTCCATTTTCCAGTTTCCAATGAAACCCTTTTCATATTCATCACATTTTCGCCTCTTCCCCTTCTGGGTAATCGCCGGAGTTCAATTTTGAATGCATTCTTCTGTGTCCGCCATAGTTGCAGAGTAGCAGAACCCAGTTGGAGAACGAAGAAGAACAAGGCGATGTCGTGTTTACTTCCCCAATTCAAGTGCCATCCTGAAACATTCTCAATCCAATTTAAGACCACGGCCATCACGATTACAACCACGGCTAATTATTCTCACCATCAAAGCTTTCTTCCCACTGCCAATTCCAGTTACACTAGAGTCAGAGATCCCCATAGTTTACGGACACAATGTATCTTGTCTGCAGCATCACCACCAACATCGACTGGAACAGCTACAACATTGAATGTGGATCGACTTAAATTGCCTCCTTTTGATACTAACACCGACTCAGTCTCTGCAGAAAGACTAAGATCATATCTAGGTGCAGTTGAATCGAGCCTAGCCTCAACTCTTCTTACCAGTGAGGAGGCTACGATAGCAGCTGCCGCAGCTGAGGCAGTTACTCTTGCAAAAGCAGCTGTCAAGGTTGCAAAGGATGCAGCTCTTCTGGTTAATAACAGCAACTCTTCCAGAACAGGAACAAAATCTCAATCTTCTCCCAAATCTGATGCTTTACATTTCAAGTGGGCTCAATTTATGGAATCCGAAAGGGCCGATATAATAGGAGAGCCAGTTGGAGTTAATAATCGCCCTGCGGAAGGTGATGCTTTGGAACACAGCATAGCAGAATCTGATGACATGGAGCCAAAATCTGAAGAACTTGAACTTTTACAGGATGAACTCTCTAAGAGTATAGCTGTAAGATCAAAGCGTCAAACAGAACGAAAAGCCAGAAGAACTAGAGCAGCAGAGAAGACTGGTACTAGTGTAGTGTCATTGAAGTCTGGTTCTAGCAGCCGAAAGAAGCGTAATTCTTTACAAGAAGTGGACTACTCTGACCCATTGCGTTATTTAAGAGCAACTACCAGCACTTCTAGACTTCTTACCGCAACTGAAGAACTTGAACTGTCAGAAGGAATTCAGGACTTACTGAAACTAGAAAGGCTCCAGGAGGAGCTTGCAGAACGGTATGGGAACGAGCCAACCTTTGCTCAATGGGCAGCTGCGGCTGGAGTCAATCAGAGGACGCTGAGAAAGCGTCTAAACTATGGTACTTTTTGTAAGGACAAAATGATAAAAAGCAACATTCGTCTTGTCATTTCGATTGCGAAAAATTATCAGGGAGCTGGGATGAATCTCCAGGATCTAGTTCAGGAAGGATGTCGAGGTCTTGTACGAGGTGCAGAGAAGTTTGATGCTTCAAAAGGCTTCAAGTTTTCAACCTATGCTCATTGGTGGATAAAGCAGGCGGTTCGGAAATCTCTTTCTGATCAGTCCAGGACTATTCGCTTGCCATTTCACATGGTGGAAGCAACTTATAGGGTGAAGGAGGCTAGAAAGCAATTATACAGTGAGAATGGAAGACATCCTGATGATGAAGAAATTGCCGAAGCAGCCGGGCTGTCGATGAAGAGGCTTGCTGCAGTATTAATGACTCCGAAAGCACCCCGATCGCTAGAGCAGAAAATCGGGATCAACCAAAATCTCAAACCTTCGGAAGTCATTTCCGACCCCGAAGCGGAAACTTCAGAAGATCTTCTGATAAAACAATTCATGAAGCAGGATCTCGAAAAGGTACTCGACTCCCTTAATCCAAGAGAGAGACAAGTAATTAGATGGAGGTTTGGGATGGAAGATGGCAGGATGAAAACATTGCAGGAAATAGGAGAAATAATGGGTGTAAGTAGGGAAAGAATTAGACAAATTGAGTCATGTGCTTTCAGAAAACTCAAAAACAAGAAGAGAACTAAACATTTGCAGCAGTATCTGATGTCATGATGAGTCTCCATCAGATTCAAGAGTTACATTCCTCCAAAAGTATCTATTATCTGATATGAGGTTTAAACAAGGCTTGTTCTTTCTTTCTTTCTTTTTTCTTTTTCCCTTTCTTTCTGTAACATATATTACTATGCATCTTCTTTCTCATTTTCAGTATAGAGTAGTGTCTGATTGTTTACAAAATAATAGGTACTTTCTGTTCATACATATTCAATTTTAAATCAAGCAATCTCTCTTAATCCATGATTGTGGTCTGGATCAGTCTTTTTGTACCATTTTCAGATTTTGCTGTCTAATTAGGACCTGACTTGAACAGGATTTGTTTTATAAGTTGTACGATTGTCCTTTGAGTTCTAAGGAGATTTTGTTGTCCA

Coding sequence (CDS)

ATGTCGTGTTTACTTCCCCAATTCAAGTGCCATCCTGAAACATTCTCAATCCAATTTAAGACCACGGCCATCACGATTACAACCACGGCTAATTATTCTCACCATCAAAGCTTTCTTCCCACTGCCAATTCCAGTTACACTAGAGTCAGAGATCCCCATAGTTTACGGACACAATGTATCTTGTCTGCAGCATCACCACCAACATCGACTGGAACAGCTACAACATTGAATGTGGATCGACTTAAATTGCCTCCTTTTGATACTAACACCGACTCAGTCTCTGCAGAAAGACTAAGATCATATCTAGGTGCAGTTGAATCGAGCCTAGCCTCAACTCTTCTTACCAGTGAGGAGGCTACGATAGCAGCTGCCGCAGCTGAGGCAGTTACTCTTGCAAAAGCAGCTGTCAAGGTTGCAAAGGATGCAGCTCTTCTGGTTAATAACAGCAACTCTTCCAGAACAGGAACAAAATCTCAATCTTCTCCCAAATCTGATGCTTTACATTTCAAGTGGGCTCAATTTATGGAATCCGAAAGGGCCGATATAATAGGAGAGCCAGTTGGAGTTAATAATCGCCCTGCGGAAGGTGATGCTTTGGAACACAGCATAGCAGAATCTGATGACATGGAGCCAAAATCTGAAGAACTTGAACTTTTACAGGATGAACTCTCTAAGAGTATAGCTGTAAGATCAAAGCGTCAAACAGAACGAAAAGCCAGAAGAACTAGAGCAGCAGAGAAGACTGGTACTAGTGTAGTGTCATTGAAGTCTGGTTCTAGCAGCCGAAAGAAGCGTAATTCTTTACAAGAAGTGGACTACTCTGACCCATTGCGTTATTTAAGAGCAACTACCAGCACTTCTAGACTTCTTACCGCAACTGAAGAACTTGAACTGTCAGAAGGAATTCAGGACTTACTGAAACTAGAAAGGCTCCAGGAGGAGCTTGCAGAACGGTATGGGAACGAGCCAACCTTTGCTCAATGGGCAGCTGCGGCTGGAGTCAATCAGAGGACGCTGAGAAAGCGTCTAAACTATGGTACTTTTTGTAAGGACAAAATGATAAAAAGCAACATTCGTCTTGTCATTTCGATTGCGAAAAATTATCAGGGAGCTGGGATGAATCTCCAGGATCTAGTTCAGGAAGGATGTCGAGGTCTTGTACGAGGTGCAGAGAAGTTTGATGCTTCAAAAGGCTTCAAGTTTTCAACCTATGCTCATTGGTGGATAAAGCAGGCGGTTCGGAAATCTCTTTCTGATCAGTCCAGGACTATTCGCTTGCCATTTCACATGGTGGAAGCAACTTATAGGGTGAAGGAGGCTAGAAAGCAATTATACAGTGAGAATGGAAGACATCCTGATGATGAAGAAATTGCCGAAGCAGCCGGGCTGTCGATGAAGAGGCTTGCTGCAGTATTAATGACTCCGAAAGCACCCCGATCGCTAGAGCAGAAAATCGGGATCAACCAAAATCTCAAACCTTCGGAAGTCATTTCCGACCCCGAAGCGGAAACTTCAGAAGATCTTCTGATAAAACAATTCATGAAGCAGGATCTCGAAAAGGTACTCGACTCCCTTAATCCAAGAGAGAGACAAGTAATTAGATGGAGGTTTGGGATGGAAGATGGCAGGATGAAAACATTGCAGGAAATAGGAGAAATAATGGGTGTAAGTAGGGAAAGAATTAGACAAATTGAGTCATGTGCTTTCAGAAAACTCAAAAACAAGAAGAGAACTAAACATTTGCAGCAGTATCTGATGTCATGA

Protein sequence

MSCLLPQFKCHPETFSIQFKTTAITITTTANYSHHQSFLPTANSSYTRVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPKSDALHFKWAQFMESERADIIGEPVGVNNRPAEGDALEHSIAESDDMEPKSEELELLQDELSKSIAVRSKRQTERKARRTRAAEKTGTSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS

Homology

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BLAST of Lcy01g005290 vs. ExPASy Swiss-Prot
Match: O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 660.2 bits (1702), Expect = 2.2e-188
Identity = 383/599 (63.94%), Postives = 459/599 (76.63%), Query Frame = 0


Query: 2   SCLLPQFKCHPETFSIQFKTTAITITTTANYSHHQSFLPTANSSYTRVRDPHSLRTQCIL 61
           SCLLPQFKC P++FSI F+T               SF    ++  +    P     QC +
Sbjct: 3   SCLLPQFKCPPDSFSIHFRT---------------SFCAPKHNKGSVFFQP-----QCAV 62

Query: 62  SAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGA---------VESSLAST 121
           S  SP   T   + L+V +L+LP FDT++DS+ ++R  +Y            +E+  + T
Sbjct: 63  S-TSPALLT---SMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASET 122

Query: 122 LLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPKSDALHFKWA 181
           LLTS+EA + AAAAEAV LA+AAVKVAKDA L   NSN++   T S +  +S     KW 
Sbjct: 123 LLTSDEAVVVAAAAEAVALARAAVKVAKDATLF-KNSNNTNLLTSSTADKRS-----KWD 182

Query: 182 QFMESERADIIGEPVGVNNRPAEGDALEHSIAESD---DME-PKSEELELLQDELSKSIA 241
           QF E ERA I+G  + V++     D +  S +  +   D+E  K EE+ELL+++ S S+A
Sbjct: 183 QFTEKERAGILGH-LAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSLA 242

Query: 242 VRSKRQTERKARRTRAAEKTGTSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSR 301
           VRS RQTERKARR +  EKT + + S+K+GSS +KKR   QEVD++DPLRYLR TTS+S+
Sbjct: 243 VRSTRQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSK 302

Query: 302 LLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTF 361
           LLT  EE ELS GIQDLLKLERLQ EL ER G +PTFAQWA+AAGV+Q++LR+R+++GT 
Sbjct: 303 LLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTL 362

Query: 362 CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 421
           CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWW
Sbjct: 363 CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWW 422

Query: 422 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRL 481
           IKQAVRKSLSDQSR IRLPFHMVEATYRVKEARKQLYSE G+HP +EEIAEA GLSMKRL
Sbjct: 423 IKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRL 482

Query: 482 AAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPR 541
            AVL++PK PRSL+QKIG+NQNLKPSEVI+DPEA TSED+LIK+FM+QDL+KVLDSL  R
Sbjct: 483 MAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTR 542

Query: 542 ERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 588
           E+QVIRWRFGMEDGRMKTLQEIGE+MGVSRER+RQIES AFRKLKNKKR  HLQQYL++
Sbjct: 543 EKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLVA 570

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BLAST of Lcy01g005290 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.3e-76
Identity = 154/332 (46.39%), Postives = 225/332 (67.77%), Query Frame = 0


Query: 256 KSGSSSRKKRNSLQEVDY--SDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQE 315
           KSG +++ +R +  +  +   D +R         RLL A EE+EL+  I DLL+LER++E
Sbjct: 59  KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 118

Query: 316 ELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGM 375
            L+E+   +P  ++WA A  +     R RL+ G   KDKM++SN+RLV+SIAK Y   G+
Sbjct: 119 RLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178

Query: 376 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 435
           + QDL+QEG  GL+R AEKFD  KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E 
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 238

Query: 436 TYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKP 495
             R+K+  K L  E GR P +EEIA    +++++L  +  + + P SLE  IG  ++ + 
Sbjct: 239 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 298

Query: 496 SEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEI 555
            + I + + ET ED + K  +++DLEKVLDSL+PRER V+R R+G++DGRMKTL+EIG+I
Sbjct: 299 GDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQI 358

Query: 556 MGVSRERIRQIESCAFRKLKNKKRTKHLQQYL 586
             V+RERIRQIE+ A RKL++  R   L++Y+
Sbjct: 359 FNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389

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BLAST of Lcy01g005290 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 274.2 bits (700), Expect = 3.3e-72
Identity = 163/397 (41.06%), Postives = 244/397 (61.46%), Query Frame = 0


Query: 202 SIAESDDMEPKSEELELLQDELSKSIAVRSKRQTERKARRTRAAEKTGTSVVSL------ 261
           SI +  +    ++  ELL D   K    ++KR + +KA  T A  +  T++         
Sbjct: 6   SIDKEQEEAGMTQATELL-DPALKPAETKAKRSSRKKA--TTAVVEPATTIAPTADVDAI 65

Query: 262 -------KSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKL 321
                  +   ++ K +  +++    D +R         RLL A EE+EL+  I DLL L
Sbjct: 66  DDEDSVGEDEDAAAKAKAKVRKTYTEDSIRLYLQEIGRIRLLRADEEIELARQIADLLAL 125

Query: 322 ERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNY 381
           ER+++EL E+    P+ A+WAAA        R+RL  G   KDKM++SN+RLV+SIAK Y
Sbjct: 126 ERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKY 185

Query: 382 QGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 441
              G++ QDL+QEG  GL+R AEKFD  KG+KFSTYA WWI+QA+ ++++DQSRTIRLP 
Sbjct: 186 MNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 245

Query: 442 HMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGIN 501
           H+ E   R+K+  K L  E GR P +EEIA    +++++L  +  + + P SLE  IG  
Sbjct: 246 HLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKE 305

Query: 502 QNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQ 561
           ++ +  + I + + ET ED + K  +++DLE VL +L+PRER V+R R+G++DGRMKTL+
Sbjct: 306 EDSRLGDFI-EADGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLE 365

Query: 562 EIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL 586
           EIG++  V+RERIRQIE+ A RKL++  R   L++Y+
Sbjct: 366 EIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 398

[Close]

BLAST of Lcy01g005290 vs. ExPASy Swiss-Prot
Match: P52322 (RNA polymerase sigma factor SigA OS=Microcystis aeruginosa OX=1126 GN=sigA PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.9e-67
Identity = 148/366 (40.44%), Postives = 223/366 (60.93%), Query Frame = 0


Query: 260 SSRKKRNSLQEVDYS-DPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEE---- 319
           +S ++R++ ++  Y+ D +R         RLL A EE+EL+  I DLLKLER++E+    
Sbjct: 51  ASARRRDAARKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLY 110

Query: 320 ------------------LAERYGNEPTFA-----------------QWAAAAGVNQRTL 379
                             + E+   EP  +                 +W A +       
Sbjct: 111 SDAEWGKQVFLFERIEKIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAF 170

Query: 380 RKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 439
           ++RL +G   K+KM++SN+RLV+SIAK Y   G++ QDL+QEG  GL+R AEKFD  KG+
Sbjct: 171 KRRLYHGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 230

Query: 440 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAE 499
           KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E   R+K+  K L  E  R P +EEIA 
Sbjct: 231 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIAT 290

Query: 500 AAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLE 559
              +++++L  +  + + P SLE  IG  ++ +  + I + + ET ED + K  +++DLE
Sbjct: 291 KMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLE 350

Query: 560 KVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTK 586
            VLD+L+PRER V+R R+G++DGRMKTL+EIG+I  V+RERIRQIE+ A RKL++  R  
Sbjct: 351 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 410

[Close]

BLAST of Lcy01g005290 vs. ExPASy Swiss-Prot
Match: Q9LD95 (RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGF PE=1 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 8.8e-65
Identity = 144/360 (40.00%), Postives = 214/360 (59.44%), Query Frame = 0


Query: 225 KSIAVRSKRQTERKARRTRAAEKTGTSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATT 284
           K   VRSKRQ ER+A+  RA +             +S KK+   Q  D  D L+      
Sbjct: 184 KGNIVRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK-QGADNDDALQLFLWGP 243

Query: 285 STSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLN 344
            T +LLTA EE EL   IQ LLKLE+++ +L  + G EPT  +WA A G++   L+  ++
Sbjct: 244 ETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIH 303

Query: 345 YGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 404
            G   ++K+I +N+RLV+ IAK YQ  G+N QDL+QEG  GL++  EKF    G +F+TY
Sbjct: 304 RGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATY 363

Query: 405 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLS 464
           A+WWI+Q++RKS+   SRTIRLP ++     +V EARK    E    P  EE+A   G+S
Sbjct: 364 AYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVS 423

Query: 465 MKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDS 524
            ++L  +L   + P S++Q I  +Q+    E+  D   ET    + KQ M+  +  +L+ 
Sbjct: 424 TEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNV 483

Query: 525 LNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY 584
           L+P+ER++I+ RFG++ G+ ++L EIGEI G+S+ER+RQ+ES A  +LK    +  L  Y
Sbjct: 484 LSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAY 542

[Close]

BLAST of Lcy01g005290 vs. ExPASy TrEMBL
Match: A0A6J1DSR7 (RNA polymerase sigma factor OS=Momordica charantia OX=3673 GN=LOC111022820 PE=3 SV=1)

HSP 1 Score: 1026.9 bits (2654), Expect = 3.2e-296
Identity = 549/587 (93.53%), Postives = 564/587 (96.08%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTTAITITTTANYSHHQSFLPTANSSYTRVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFKTTAIT+TTTANYSHH +FLPTANSS T+VRDPHSLRTQCI
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCI 60

Query: 61  LSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEAT 120
           LSAASP TSTGTATT NV+RLKLPP D NTDS+SAERLRSYL AVESS ASTLLTSEEAT
Sbjct: 61  LSAASPSTSTGTATTFNVERLKLPPLDANTDSISAERLRSYLSAVESSFASTLLTSEEAT 120

Query: 121 IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPKSDALHFKWAQFMESERA 180
           IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSS+TG KSQSS KSDALHFKW QFMESERA
Sbjct: 121 IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERA 180

Query: 181 DIIGEPVGVNNRPAEGDALEHSIAESDDMEPKSEELELLQDELSKSIAVRSKRQTERKAR 240
           DIIG PVGVNNRPAEGDAL+H  AESD  +P +EELELLQDELS +IAVRS+RQTER+A+
Sbjct: 181 DIIGVPVGVNNRPAEGDALQHDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAK 240

Query: 241 RTRAAEKTGTSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSE 300
           RTRAAEK  TSVVS+KSGSSSRKKRNS+QEVDYSDPLRYLRATTS SRLLTATEELELSE
Sbjct: 241 RTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSE 300

Query: 301 GIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 360
           GIQDLLKLERLQEEL ERYG EPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL
Sbjct: 301 GIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 360

Query: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420
           VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ
Sbjct: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420

Query: 421 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRS 480
           SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRS
Sbjct: 421 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRS 480

Query: 481 LEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGME 540
           LEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGME
Sbjct: 481 LEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGME 540

Query: 541 DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 588
           DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Sbjct: 541 DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 586

[Close]

BLAST of Lcy01g005290 vs. ExPASy TrEMBL
Match: A0A0A0K917 (RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G078550 PE=3 SV=1)

HSP 1 Score: 1015.4 bits (2624), Expect = 9.7e-293
Identity = 544/587 (92.67%), Postives = 557/587 (94.89%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTTAITITTTANYSHHQSFLPTANSSYTRVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFK       T ANYSHH SFLPTA SSYT+VRDPHSLRTQCI
Sbjct: 1   MSCLLPQFKCHPETFSIQFK-------TAANYSHHHSFLPTAYSSYTKVRDPHSLRTQCI 60

Query: 61  LSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEAT 120
           LSAASPPTSTGTATTL+VDRLKLPPFDTNTDSVS ERLRSYLGAVESSLASTLLTSEEA+
Sbjct: 61  LSAASPPTSTGTATTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEAS 120

Query: 121 IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPKSDALHFKWAQFMESERA 180
           IAAAAAEAVTLAKAAVKVA+DAALL NN NSSR GTKSQSSPK DALHFKWAQFMESERA
Sbjct: 121 IAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFMESERA 180

Query: 181 DIIGEPVGVNNRPAEGDALEHSIAESDDMEPKSEELELLQDELSKSIAVRSKRQTERKAR 240
           DIIGEPVGVN RP EGDALE S  ESDDMEP SEELELLQDELS+SI V+SKRQTERKAR
Sbjct: 181 DIIGEPVGVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERKAR 240

Query: 241 RTRAAEKTGTSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSE 300
           RTRAAEKT TSV+S KSGSSSRKKRNS+QEVDYSDPLRYLRATT+TSRLLTATEELELSE
Sbjct: 241 RTRAAEKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELELSE 300

Query: 301 GIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 360
           GIQDLLKLERLQEEL ERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRL
Sbjct: 301 GIQDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRL 360

Query: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420
           VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQ
Sbjct: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQ 420

Query: 421 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRS 480
           SRTIRLPFHMVEATYRVKEARKQL  ENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRS
Sbjct: 421 SRTIRLPFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRS 480

Query: 481 LEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGME 540
           LEQKIGINQNLKPSEVISDPEAET ED+LIKQFMKQDLEKVLDSLNPRE+QVIRWRFGME
Sbjct: 481 LEQKIGINQNLKPSEVISDPEAETCEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGME 540

Query: 541 DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 588
           DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY+MS
Sbjct: 541 DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVMS 580

[Close]

BLAST of Lcy01g005290 vs. ExPASy TrEMBL
Match: A0A1S3CD00 (RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1)

HSP 1 Score: 1014.6 bits (2622), Expect = 1.7e-292
Identity = 545/587 (92.84%), Postives = 557/587 (94.89%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTTAITITTTANYSHHQSFLPTANSSYTRVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFK       T AN SHH SF+PTA SSYT+VRDPHSLRTQCI
Sbjct: 1   MSCLLPQFKCHPETFSIQFK-------TAANNSHHHSFIPTAYSSYTKVRDPHSLRTQCI 60

Query: 61  LSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEAT 120
           LSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVS ERLRSYLGAVESSLASTLLTSEEAT
Sbjct: 61  LSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEAT 120

Query: 121 IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPKSDALHFKWAQFMESERA 180
           IAAAAAEAVTLAKAAVKVA+DAALL NN NSSR GTKSQ SPK DALHFKWAQFMESERA
Sbjct: 121 IAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERA 180

Query: 181 DIIGEPVGVNNRPAEGDALEHSIAESDDMEPKSEELELLQDELSKSIAVRSKRQTERKAR 240
           DIIGEPVGVN RP EGDALE S  ESDD+EP S+ELELLQDELS+SI V+SKRQTERKAR
Sbjct: 181 DIIGEPVGVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKAR 240

Query: 241 RTRAAEKTGTSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSE 300
           RTRAAEKT TSVV  KSGSSSRKKR+SLQEVDYSDPLRYLRATTSTSRLLTATEELELSE
Sbjct: 241 RTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSE 300

Query: 301 GIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 360
           GIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRL
Sbjct: 301 GIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRL 360

Query: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420
           VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQ
Sbjct: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQ 420

Query: 421 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRS 480
           SRTIRLPFHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRS
Sbjct: 421 SRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRS 480

Query: 481 LEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGME 540
           LEQKIGINQNLKPSEVISDPEAET+ED+LIKQFMKQDLEKVLDSLNPRE+QVIRWRFGME
Sbjct: 481 LEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGME 540

Query: 541 DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 588
           DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Sbjct: 541 DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 580

[Close]

BLAST of Lcy01g005290 vs. ExPASy TrEMBL
Match: A0A6J1HL45 (RNA polymerase sigma factor sigB OS=Cucurbita moschata OX=3662 GN=LOC111464542 PE=3 SV=1)

HSP 1 Score: 987.6 bits (2552), Expect = 2.2e-284
Identity = 529/586 (90.27%), Postives = 550/586 (93.86%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTTAITITTTANYSHHQSFLPTANSSYTRVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFKT A TIT T   SHH +FLPTANS+Y + RDPHSLRTQCI
Sbjct: 98  MSCLLPQFKCHPETFSIQFKTPASTITPTPTSSHHHTFLPTANSTYFKFRDPHSLRTQCI 157

Query: 61  LSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEAT 120
           LSAASPPT TGTATT NVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEAT
Sbjct: 158 LSAASPPTLTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEAT 217

Query: 121 IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPKSDALHFKWAQFMESERA 180
           IAAAAAEAV LAKAAVK A DAALLVNNSNSSR+ TKSQSS +S+ALHFKW QFMESERA
Sbjct: 218 IAAAAAEAVALAKAAVKAANDAALLVNNSNSSRSVTKSQSSSRSNALHFKWDQFMESERA 277

Query: 181 DIIGEPVGVNNRPAEGDALEHSIAESDDMEPKSEELELLQDELSKSIAVRSKRQTERKAR 240
           DIIGEPVGVNNRP EGDALE S AESDDMEP SEELELL+DE SKSIAVRS RQTERKAR
Sbjct: 278 DIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKAR 337

Query: 241 RTRAAEKTGTSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSE 300
           RTRA+EK  TSVVSLKSGSSSRKKRNS QEVDY+DPLRYLRATTS S+LLTA++ELELSE
Sbjct: 338 RTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELELSE 397

Query: 301 GIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 360
           GIQDLLKLERL+EELA RYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL
Sbjct: 398 GIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 457

Query: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420
           VISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ
Sbjct: 458 VISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 517

Query: 421 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRS 480
           SRTIRLPFHMVEATY+VKEARKQLY+ NGR P+DEEIA AAGLSMKRLA VLMTPKAPRS
Sbjct: 518 SRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRS 577

Query: 481 LEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGME 540
           LEQK GINQNLKPSEVISDPEA T+EDLLIKQFMKQ+LEKVLDSLNPRERQ+IRWR+GME
Sbjct: 578 LEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGME 637

Query: 541 DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM 587
           DGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNKKRTKHLQQYLM
Sbjct: 638 DGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM 683

[Close]

BLAST of Lcy01g005290 vs. ExPASy TrEMBL
Match: A0A6J1KM29 (RNA polymerase sigma factor OS=Cucurbita maxima OX=3661 GN=LOC111494519 PE=3 SV=1)

HSP 1 Score: 983.4 bits (2541), Expect = 4.1e-283
Identity = 530/586 (90.44%), Postives = 549/586 (93.69%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTTAITITTTANYSHHQSFLPTANSSYTRVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFKT AITIT T   SHH +FLPTANS+Y +VRDPHSLRTQCI
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTPAITITPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCI 60

Query: 61  LSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEAT 120
           LSAA   TSTGTATT NVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEAT
Sbjct: 61  LSAA---TSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEAT 120

Query: 121 IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPKSDALHFKWAQFMESERA 180
           IAAAAAEAV LAKAAVK A DAALLVNNSNS+R+ TKSQSS KS+ALHFKW QFMESERA
Sbjct: 121 IAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSKSNALHFKWDQFMESERA 180

Query: 181 DIIGEPVGVNNRPAEGDALEHSIAESDDMEPKSEELELLQDELSKSIAVRSKRQTERKAR 240
           DIIGEPVGVNNRP EGDALE S AESDDMEP SEELELLQDE SKSIAVRS RQTERKAR
Sbjct: 181 DIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLQDEFSKSIAVRSNRQTERKAR 240

Query: 241 RTRAAEKTGTSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSE 300
           RTRA+EK  TSVVSLKSGSSSRKKRNS QEVDY+DPLRYLRATTS S+LLTA++ELELSE
Sbjct: 241 RTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELELSE 300

Query: 301 GIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 360
           GIQDLLKLERL+EELA RYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL
Sbjct: 301 GIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 360

Query: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420
           VISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ
Sbjct: 361 VISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420

Query: 421 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRS 480
           SRTIRLPFHMVEATY+VKEARKQLY+ NGR P DEEIA AAGLSMKRLA VLMTPKAPRS
Sbjct: 421 SRTIRLPFHMVEATYKVKEARKQLYTANGRLPADEEIAVAAGLSMKRLATVLMTPKAPRS 480

Query: 481 LEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGME 540
           LEQK GINQNLKPSEVISDPEA T+EDLLIKQFMKQ+LEKVLDSLNPRERQ+IRWR+GME
Sbjct: 481 LEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGME 540

Query: 541 DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM 587
           DGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNKKRTKHLQQYLM
Sbjct: 541 DGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM 583

[Close]

BLAST of Lcy01g005290 vs. NCBI nr
Match: XP_022155781.1 (RNA polymerase sigma factor sigB [Momordica charantia])

HSP 1 Score: 1026.9 bits (2654), Expect = 6.7e-296
Identity = 549/587 (93.53%), Postives = 564/587 (96.08%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTTAITITTTANYSHHQSFLPTANSSYTRVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFKTTAIT+TTTANYSHH +FLPTANSS T+VRDPHSLRTQCI
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCI 60

Query: 61  LSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEAT 120
           LSAASP TSTGTATT NV+RLKLPP D NTDS+SAERLRSYL AVESS ASTLLTSEEAT
Sbjct: 61  LSAASPSTSTGTATTFNVERLKLPPLDANTDSISAERLRSYLSAVESSFASTLLTSEEAT 120

Query: 121 IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPKSDALHFKWAQFMESERA 180
           IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSS+TG KSQSS KSDALHFKW QFMESERA
Sbjct: 121 IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERA 180

Query: 181 DIIGEPVGVNNRPAEGDALEHSIAESDDMEPKSEELELLQDELSKSIAVRSKRQTERKAR 240
           DIIG PVGVNNRPAEGDAL+H  AESD  +P +EELELLQDELS +IAVRS+RQTER+A+
Sbjct: 181 DIIGVPVGVNNRPAEGDALQHDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAK 240

Query: 241 RTRAAEKTGTSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSE 300
           RTRAAEK  TSVVS+KSGSSSRKKRNS+QEVDYSDPLRYLRATTS SRLLTATEELELSE
Sbjct: 241 RTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSE 300

Query: 301 GIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 360
           GIQDLLKLERLQEEL ERYG EPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL
Sbjct: 301 GIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 360

Query: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420
           VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ
Sbjct: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420

Query: 421 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRS 480
           SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRS
Sbjct: 421 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRS 480

Query: 481 LEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGME 540
           LEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGME
Sbjct: 481 LEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGME 540

Query: 541 DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 588
           DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Sbjct: 541 DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 586

[Close]

BLAST of Lcy01g005290 vs. NCBI nr
Match: XP_038875580.1 (RNA polymerase sigma factor sigB isoform X1 [Benincasa hispida])

HSP 1 Score: 1020.8 bits (2638), Expect = 4.8e-294
Identity = 548/588 (93.20%), Postives = 561/588 (95.41%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTTAITITTTANYS-HHQSFLPTANSSYTRVRDPHSLRTQC 60
           MSCLLPQFKCHPETFSIQFK       T ANY+ HH +FLPTANSSYT+VRDPHSLRTQC
Sbjct: 1   MSCLLPQFKCHPETFSIQFK-------TAANYAPHHHTFLPTANSSYTKVRDPHSLRTQC 60

Query: 61  ILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEA 120
           ILSAASPPTSTGTATTLNVDRL LPPFDTNTDSVS ERLRSYLGAVESSLASTLLTSEEA
Sbjct: 61  ILSAASPPTSTGTATTLNVDRLMLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEA 120

Query: 121 TIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPKSDALHFKWAQFMESER 180
           TIAAAAAEAV LAKAAVKVA+DAALL NNSNSSR G KS+SSP+ DALHFKWAQFMESER
Sbjct: 121 TIAAAAAEAVALAKAAVKVARDAALLANNSNSSRAGEKSRSSPRPDALHFKWAQFMESER 180

Query: 181 ADIIGEPVGVNNRPAEGDALEHSIAESDDMEPKSEELELLQDELSKSIAVRSKRQTERKA 240
           ADIIGEPVGVNNRP E DAL+ S  +SDDMEP SEELELLQDELS+SI VRSKRQTERKA
Sbjct: 181 ADIIGEPVGVNNRPMETDALQPSTTKSDDMEPTSEELELLQDELSESITVRSKRQTERKA 240

Query: 241 RRTRAAEKTGTSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELS 300
           RRTRAAEKT TSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTA EELELS
Sbjct: 241 RRTRAAEKTATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTAAEELELS 300

Query: 301 EGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIR 360
           EGIQDLLKLERLQEELA+RYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIR
Sbjct: 301 EGIQDLLKLERLQEELADRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIR 360

Query: 361 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 420
           LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD
Sbjct: 361 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 420

Query: 421 QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPR 480
           QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPR
Sbjct: 421 QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPR 480

Query: 481 SLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGM 540
           SLEQKIGINQNLKPSEVISDPEAET+ED+LIKQFMKQDLEKVLDSLNPRERQVIRWRFGM
Sbjct: 481 SLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGM 540

Query: 541 EDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 588
           EDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL+S
Sbjct: 541 EDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLIS 581

[Close]

BLAST of Lcy01g005290 vs. NCBI nr
Match: XP_004154029.1 (RNA polymerase sigma factor sigB [Cucumis sativus] >KGN46260.1 hypothetical protein Csa_004860 [Cucumis sativus])

HSP 1 Score: 1015.4 bits (2624), Expect = 2.0e-292
Identity = 544/587 (92.67%), Postives = 557/587 (94.89%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTTAITITTTANYSHHQSFLPTANSSYTRVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFK       T ANYSHH SFLPTA SSYT+VRDPHSLRTQCI
Sbjct: 1   MSCLLPQFKCHPETFSIQFK-------TAANYSHHHSFLPTAYSSYTKVRDPHSLRTQCI 60

Query: 61  LSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEAT 120
           LSAASPPTSTGTATTL+VDRLKLPPFDTNTDSVS ERLRSYLGAVESSLASTLLTSEEA+
Sbjct: 61  LSAASPPTSTGTATTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEAS 120

Query: 121 IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPKSDALHFKWAQFMESERA 180
           IAAAAAEAVTLAKAAVKVA+DAALL NN NSSR GTKSQSSPK DALHFKWAQFMESERA
Sbjct: 121 IAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFMESERA 180

Query: 181 DIIGEPVGVNNRPAEGDALEHSIAESDDMEPKSEELELLQDELSKSIAVRSKRQTERKAR 240
           DIIGEPVGVN RP EGDALE S  ESDDMEP SEELELLQDELS+SI V+SKRQTERKAR
Sbjct: 181 DIIGEPVGVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERKAR 240

Query: 241 RTRAAEKTGTSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSE 300
           RTRAAEKT TSV+S KSGSSSRKKRNS+QEVDYSDPLRYLRATT+TSRLLTATEELELSE
Sbjct: 241 RTRAAEKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELELSE 300

Query: 301 GIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 360
           GIQDLLKLERLQEEL ERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRL
Sbjct: 301 GIQDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRL 360

Query: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420
           VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQ
Sbjct: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQ 420

Query: 421 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRS 480
           SRTIRLPFHMVEATYRVKEARKQL  ENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRS
Sbjct: 421 SRTIRLPFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRS 480

Query: 481 LEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGME 540
           LEQKIGINQNLKPSEVISDPEAET ED+LIKQFMKQDLEKVLDSLNPRE+QVIRWRFGME
Sbjct: 481 LEQKIGINQNLKPSEVISDPEAETCEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGME 540

Query: 541 DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 588
           DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY+MS
Sbjct: 541 DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVMS 580

[Close]

BLAST of Lcy01g005290 vs. NCBI nr
Match: XP_008460092.1 (PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis melo])

HSP 1 Score: 1014.6 bits (2622), Expect = 3.4e-292
Identity = 545/587 (92.84%), Postives = 557/587 (94.89%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTTAITITTTANYSHHQSFLPTANSSYTRVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFK       T AN SHH SF+PTA SSYT+VRDPHSLRTQCI
Sbjct: 1   MSCLLPQFKCHPETFSIQFK-------TAANNSHHHSFIPTAYSSYTKVRDPHSLRTQCI 60

Query: 61  LSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEAT 120
           LSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVS ERLRSYLGAVESSLASTLLTSEEAT
Sbjct: 61  LSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEAT 120

Query: 121 IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPKSDALHFKWAQFMESERA 180
           IAAAAAEAVTLAKAAVKVA+DAALL NN NSSR GTKSQ SPK DALHFKWAQFMESERA
Sbjct: 121 IAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERA 180

Query: 181 DIIGEPVGVNNRPAEGDALEHSIAESDDMEPKSEELELLQDELSKSIAVRSKRQTERKAR 240
           DIIGEPVGVN RP EGDALE S  ESDD+EP S+ELELLQDELS+SI V+SKRQTERKAR
Sbjct: 181 DIIGEPVGVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKAR 240

Query: 241 RTRAAEKTGTSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSE 300
           RTRAAEKT TSVV  KSGSSSRKKR+SLQEVDYSDPLRYLRATTSTSRLLTATEELELSE
Sbjct: 241 RTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSE 300

Query: 301 GIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 360
           GIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRL
Sbjct: 301 GIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRL 360

Query: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420
           VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQ
Sbjct: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQ 420

Query: 421 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRS 480
           SRTIRLPFHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRS
Sbjct: 421 SRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRS 480

Query: 481 LEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGME 540
           LEQKIGINQNLKPSEVISDPEAET+ED+LIKQFMKQDLEKVLDSLNPRE+QVIRWRFGME
Sbjct: 481 LEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGME 540

Query: 541 DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 588
           DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Sbjct: 541 DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 580

[Close]

BLAST of Lcy01g005290 vs. NCBI nr
Match: XP_022964550.1 (RNA polymerase sigma factor sigB [Cucurbita moschata])

HSP 1 Score: 987.6 bits (2552), Expect = 4.5e-284
Identity = 529/586 (90.27%), Postives = 550/586 (93.86%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTTAITITTTANYSHHQSFLPTANSSYTRVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFKT A TIT T   SHH +FLPTANS+Y + RDPHSLRTQCI
Sbjct: 98  MSCLLPQFKCHPETFSIQFKTPASTITPTPTSSHHHTFLPTANSTYFKFRDPHSLRTQCI 157

Query: 61  LSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEAT 120
           LSAASPPT TGTATT NVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEAT
Sbjct: 158 LSAASPPTLTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEAT 217

Query: 121 IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPKSDALHFKWAQFMESERA 180
           IAAAAAEAV LAKAAVK A DAALLVNNSNSSR+ TKSQSS +S+ALHFKW QFMESERA
Sbjct: 218 IAAAAAEAVALAKAAVKAANDAALLVNNSNSSRSVTKSQSSSRSNALHFKWDQFMESERA 277

Query: 181 DIIGEPVGVNNRPAEGDALEHSIAESDDMEPKSEELELLQDELSKSIAVRSKRQTERKAR 240
           DIIGEPVGVNNRP EGDALE S AESDDMEP SEELELL+DE SKSIAVRS RQTERKAR
Sbjct: 278 DIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKAR 337

Query: 241 RTRAAEKTGTSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSE 300
           RTRA+EK  TSVVSLKSGSSSRKKRNS QEVDY+DPLRYLRATTS S+LLTA++ELELSE
Sbjct: 338 RTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELELSE 397

Query: 301 GIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 360
           GIQDLLKLERL+EELA RYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL
Sbjct: 398 GIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 457

Query: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420
           VISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ
Sbjct: 458 VISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 517

Query: 421 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRS 480
           SRTIRLPFHMVEATY+VKEARKQLY+ NGR P+DEEIA AAGLSMKRLA VLMTPKAPRS
Sbjct: 518 SRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRS 577

Query: 481 LEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGME 540
           LEQK GINQNLKPSEVISDPEA T+EDLLIKQFMKQ+LEKVLDSLNPRERQ+IRWR+GME
Sbjct: 578 LEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGME 637

Query: 541 DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM 587
           DGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNKKRTKHLQQYLM
Sbjct: 638 DGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM 683

[Close]

BLAST of Lcy01g005290 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 660.2 bits (1702), Expect = 1.5e-189
Identity = 383/599 (63.94%), Postives = 459/599 (76.63%), Query Frame = 0


Query: 2   SCLLPQFKCHPETFSIQFKTTAITITTTANYSHHQSFLPTANSSYTRVRDPHSLRTQCIL 61
           SCLLPQFKC P++FSI F+T               SF    ++  +    P     QC +
Sbjct: 3   SCLLPQFKCPPDSFSIHFRT---------------SFCAPKHNKGSVFFQP-----QCAV 62

Query: 62  SAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSAERLRSYLGA---------VESSLAST 121
           S  SP   T   + L+V +L+LP FDT++DS+ ++R  +Y            +E+  + T
Sbjct: 63  S-TSPALLT---SMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASET 122

Query: 122 LLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSRTGTKSQSSPKSDALHFKWA 181
           LLTS+EA + AAAAEAV LA+AAVKVAKDA L   NSN++   T S +  +S     KW 
Sbjct: 123 LLTSDEAVVVAAAAEAVALARAAVKVAKDATLF-KNSNNTNLLTSSTADKRS-----KWD 182

Query: 182 QFMESERADIIGEPVGVNNRPAEGDALEHSIAESD---DME-PKSEELELLQDELSKSIA 241
           QF E ERA I+G  + V++     D +  S +  +   D+E  K EE+ELL+++ S S+A
Sbjct: 183 QFTEKERAGILGH-LAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSLA 242

Query: 242 VRSKRQTERKARRTRAAEKTGTSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSR 301
           VRS RQTERKARR +  EKT + + S+K+GSS +KKR   QEVD++DPLRYLR TTS+S+
Sbjct: 243 VRSTRQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSK 302

Query: 302 LLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTF 361
           LLT  EE ELS GIQDLLKLERLQ EL ER G +PTFAQWA+AAGV+Q++LR+R+++GT 
Sbjct: 303 LLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTL 362

Query: 362 CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 421
           CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWW
Sbjct: 363 CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWW 422

Query: 422 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRL 481
           IKQAVRKSLSDQSR IRLPFHMVEATYRVKEARKQLYSE G+HP +EEIAEA GLSMKRL
Sbjct: 423 IKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRL 482

Query: 482 AAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPR 541
            AVL++PK PRSL+QKIG+NQNLKPSEVI+DPEA TSED+LIK+FM+QDL+KVLDSL  R
Sbjct: 483 MAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTR 542

Query: 542 ERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 588
           E+QVIRWRFGMEDGRMKTLQEIGE+MGVSRER+RQIES AFRKLKNKKR  HLQQYL++
Sbjct: 543 EKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLVA 570

[Close]

BLAST of Lcy01g005290 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 249.6 bits (636), Expect = 6.2e-66
Identity = 144/360 (40.00%), Postives = 214/360 (59.44%), Query Frame = 0


Query: 225 KSIAVRSKRQTERKARRTRAAEKTGTSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATT 284
           K   VRSKRQ ER+A+  RA +             +S KK+   Q  D  D L+      
Sbjct: 184 KGNIVRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK-QGADNDDALQLFLWGP 243

Query: 285 STSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLN 344
            T +LLTA EE EL   IQ LLKLE+++ +L  + G EPT  +WA A G++   L+  ++
Sbjct: 244 ETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIH 303

Query: 345 YGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 404
            G   ++K+I +N+RLV+ IAK YQ  G+N QDL+QEG  GL++  EKF    G +F+TY
Sbjct: 304 RGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATY 363

Query: 405 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLS 464
           A+WWI+Q++RKS+   SRTIRLP ++     +V EARK    E    P  EE+A   G+S
Sbjct: 364 AYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVS 423

Query: 465 MKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDS 524
            ++L  +L   + P S++Q I  +Q+    E+  D   ET    + KQ M+  +  +L+ 
Sbjct: 424 TEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNV 483

Query: 525 LNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY 584
           L+P+ER++I+ RFG++ G+ ++L EIGEI G+S+ER+RQ+ES A  +LK    +  L  Y
Sbjct: 484 LSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAY 542

[Close]

BLAST of Lcy01g005290 vs. TAIR 10
Match: AT3G53920.1 (RNApolymerase sigma-subunit C )

HSP 1 Score: 213.0 bits (541), Expect = 6.5e-55
Identity = 126/374 (33.69%), Postives = 228/374 (60.96%), Query Frame = 0


Query: 213 SEELELLQDELSKSIAVRSKRQTERKARRTRAAEKTGTSVVSLKSGSSSRKKRNSLQEVD 272
           S+  EL+    ++ + V S+R+ ++KARR+    + G    SL  G   R   N++    
Sbjct: 204 SDTTELVDTTPNQQVFVSSRRKVKKKARRSSVTAENGDQ-SSLPIG--LRTTWNNIDVPR 263

Query: 273 YSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAA 332
              P +Y +     SR      E E+S G++ +  +ER++ +L E  G   + + WAAAA
Sbjct: 264 VRRPPKYRKKRERISR-----NETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAA 323

Query: 333 GVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 392
           G+N++ L + L+YG +C+D+++KS   LV+ +A+NY+G G+  +DL+Q G  G+++GAE+
Sbjct: 324 GMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAER 383

Query: 393 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG-RH 452
           FD ++G+KFSTY  +WI++++   +S  +R + +P  ++     +++ARK L + +G ++
Sbjct: 384 FDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKY 443

Query: 453 PDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIK 512
             DEEIA+  G S+K++ A     K   S+++K+G     K  E   D   E+ E+ +++
Sbjct: 444 AADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMR 503

Query: 513 QFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRK 572
           Q  ++D+  +L+ L PRE+QV+  R+G++D R K+L+EIG+++ VS+E IR+IE  A  K
Sbjct: 504 QSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAK 563

Query: 573 LKNKKRTKHLQQYL 586
           L+++   + L+ YL
Sbjct: 564 LRDQPNAEDLRYYL 569

[Close]

BLAST of Lcy01g005290 vs. TAIR 10
Match: AT5G13730.1 (sigma factor 4 )

HSP 1 Score: 184.5 bits (467), Expect = 2.5e-46
Identity = 109/303 (35.97%), Postives = 175/303 (57.76%), Query Frame = 0


Query: 285 STSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLN 344
           S S  L+  EE++L   +++  KLE L   + E   NE      A+  G  +R+  + L 
Sbjct: 118 SRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEE---NEMVSVLLASGRGKKKRSANEILC 177

Query: 345 YGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 404
                ++K+ +   RLV+SIA  YQG G+NLQDL+QEG  GL+RGAE+FD  +G+K STY
Sbjct: 178 RRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTY 237

Query: 405 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLS 464
            +WWIKQA+ ++++ +SR ++LP  M E T +V EA   L  +  R P  EEIAE   L+
Sbjct: 238 VYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLN 297

Query: 465 MKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDS 524
           +  +   +   ++P SL++    N  +   E++  P+    E+++ ++ MK ++E++L S
Sbjct: 298 VSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGS 357

Query: 525 LNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY 584
           L  RE +V+   FG+      + +EIG+ + +SRER+RQI   A +KL+N      L+ Y
Sbjct: 358 LTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 417

Query: 585 LMS 588
             S
Sbjct: 418 YSS 417

[Close]

BLAST of Lcy01g005290 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 154.5 bits (389), Expect = 2.7e-37
Identity = 127/412 (30.83%), Postives = 217/412 (52.67%), Query Frame = 0


Query: 199 LEHSIAESDDMEPKSEELELLQDE--------LSKSIAVRSKRQTERKARRTRAAEKTGT 258
           LE    + DD+   S E  LL  +        LS   AV S+   +   R+ +    T +
Sbjct: 96  LEEECYDDDDLISHSVEAILLLQKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCS 155

Query: 259 SVVSLKSGSSSRKKRN-----SLQEVDYSDPLR-YLRATTSTSRLLTATEELELSEGIQD 318
            + + +    ++KK N     ++ +V     +R Y++   S   +L+  E + LS+ I+ 
Sbjct: 156 GISARQRRIGAKKKTNMTHVKAVSDVSSGKQVRGYVKGVISED-VLSHVEVVRLSKKIKS 215

Query: 319 LLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISI 378
            L+L+  +  L +R G EP+  Q A +  +++  L+  L      ++K+  SN+RLV+SI
Sbjct: 216 GLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSI 275

Query: 379 AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 438
           A+ Y   G  + DLVQ G  GL+RG EKFD+SKGF+ STY +WWI+Q V ++L D SRT+
Sbjct: 276 AQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTL 335

Query: 439 RLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQK 498
           RLP H+ E    ++ A+ +L  E G  P  + IAE+  +S K++           SL++ 
Sbjct: 336 RLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRD 395

Query: 499 IGINQNLKPSEV----ISDPEAETS-----EDLLIKQFMKQDLEKVLD-SLNPRERQVIR 558
              + N  P E     I+D   E +     +DL     +K+++ K++  +L  RE+++IR
Sbjct: 396 AFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA----LKEEVSKLISATLGEREKEIIR 455

Query: 559 WRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM 587
             +G+ D    T ++I + +G+SRER+RQ+   A  KLK+  R + ++  ++
Sbjct: 456 LYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMIL 500

The following BLAST results are available for this feature:

BLAST of Lcy01g005290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22056	2.2e-188	63.94	RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV...	[more]
P26683	1.3e-76	46.39	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT...	[more]
P38023	3.3e-72	41.06	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]
P52322	1.9e-67	40.44	RNA polymerase sigma factor SigA OS=Microcystis aeruginosa OX=1126 GN=sigA PE=3 ...	[more]
Q9LD95	8.8e-65	40.00	RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Lcy01g005290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DSR7	3.2e-296	93.53	RNA polymerase sigma factor OS=Momordica charantia OX=3673 GN=LOC111022820 PE=3 ...	[more]
A0A0A0K917	9.7e-293	92.67	RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G078550 PE=3 SV=1	[more]
A0A1S3CD00	1.7e-292	92.84	RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1	[more]
A0A6J1HL45	2.2e-284	90.27	RNA polymerase sigma factor sigB OS=Cucurbita moschata OX=3662 GN=LOC111464542 P...	[more]
A0A6J1KM29	4.1e-283	90.44	RNA polymerase sigma factor OS=Cucurbita maxima OX=3661 GN=LOC111494519 PE=3 SV=...	[more]

BLAST of Lcy01g005290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155781.1	6.7e-296	93.53	RNA polymerase sigma factor sigB [Momordica charantia]	[more]
XP_038875580.1	4.8e-294	93.20	RNA polymerase sigma factor sigB isoform X1 [Benincasa hispida]	[more]
XP_004154029.1	2.0e-292	92.67	RNA polymerase sigma factor sigB [Cucumis sativus] >KGN46260.1 hypothetical prot...	[more]
XP_008460092.1	3.4e-292	92.84	PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis melo]	[more]
XP_022964550.1	4.5e-284	90.27	RNA polymerase sigma factor sigB [Cucurbita moschata]	[more]

BLAST of Lcy01g005290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08540.1	1.5e-189	63.94	RNApolymerase sigma subunit 2	[more]
AT2G36990.1	6.2e-66	40.00	RNApolymerase sigma-subunit F	[more]
AT3G53920.1	6.5e-55	33.69	RNApolymerase sigma-subunit C	[more]
AT5G13730.1	2.5e-46	35.97	sigma factor 4	[more]
AT1G64860.1	2.7e-37	30.83	sigma factor A	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 561..572 score: 59.57 coord: 546..561 score: 54.92 coord: 401..409 score: 82.44 coord: 377..390 score: 52.4 coord: 525..537 score: 50.02
IPR000943	RNA polymerase sigma-70	PROSITE	PS00716	SIGMA70_2	coord: 546..572
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 353..422 e-value: 1.6E-18 score: 66.3
IPR009042	RNA polymerase sigma-70 region 1.2	PFAM	PF00140	Sigma70_r1_2	coord: 275..307 e-value: 7.9E-5 score: 22.6
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 351..575 e-value: 1.4E-32 score: 110.6
None	No IPR available	GENE3D	1.10.601.10	RNA Polymerase Primary Sigma Factor	coord: 183..425 e-value: 1.3E-38 score: 135.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 247..262
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 230..245
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 230..268
None	No IPR available	PANTHER	PTHR30603:SF57	RNA POLYMERASE SIGMA FACTOR SIGB	coord: 46..586
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 46..586
None	No IPR available	CDD	cd06171	Sigma70_r4	coord: 515..573 e-value: 1.45862E-14 score: 66.359
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 426..503 e-value: 1.1E-14 score: 56.6
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 509..587 e-value: 1.9E-28 score: 100.0
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 432..507 e-value: 1.0E-16 score: 60.8
IPR016262	RNA polymerase sigma factor, SigB/C/D/F, plastid	PIRSF	PIRSF000767	Sigma_factor_SigC	coord: 1..587 e-value: 2.8E-188 score: 625.3
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 521..573 e-value: 1.5E-20 score: 72.4
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 274..423
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 421..472
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 485..584

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g005290.1	Lcy01g005290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:2000142	regulation of DNA-templated transcription, initiation
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity
molecular_function	GO:0003700	DNA-binding transcription factor activity