Lcy01g005230 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g005230
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Tubulin-specific chaperone A
Location	Chr01: 7267710 .. 7269121 (+)
RNA-Seq Expression	Lcy01g005230
Synteny	Lcy01g005230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTGTAAAAAACCTCAAGATTAAGACAGCAACCTGCAAACGCATCATCAAGGAGTTGCATTCTTATGAGAAGGAGGTAGAGAGAGAAGCTGCCAAAACAGCTGACATGAAAGAAAAAGGAGCTGACCCTTATGACCTTAAGCAACAGGTACATAAATGTTTTGTATTCTTCCTAATCAGAACTTTTAATGATTGTTGTTTGCTGACTGCTCGTGGCTTTGTTTGTGCCATCTTTGAATATCTAAAACAGGACTTCTTAGACGTTCACAACCTTGTGATAGACTGAAAATATGAACATTAGAATTTGTAAGCGTGAAGATAAGTGATCTAGAATATGAAACGAAGAATGCTCTCGAATTTGGAGTCTAGAGATGGTCATCAGGGTAGAACTTTTGAAATTATCCGTAGCCTTTAACTTTCTCACTGCGGTTGAACTTTATTTTCAGAAAGGTATGAAGTCAAAACTACGAACTAAAATGTTACTCCTCCGTTCAGAATGGCCATAGAGCAACTCTTGTATATTAAGATTCTAGATTTTGGTATGGCTGATTACCACAAATATTCAACATTGATTCAAAGGAGATGATTGAGCAGTTTCTTCCCCATCCTCCTTTTCGGGAACAGAGAATTTTTTTGTGACAGGTTGGGATTTGTGCTATTGTTTGGGGGTTGTAGGGTAAGAGGAACAATAGGACCTTTAGAGGGATGGATGAGAATCCTCATGATGTTTGGTCCCTTGCTAGATATTATGTTTCTCTTTGGATGTTAGTGACATGTCTTTTTTGTAATTATCAAGTCTCATTCATATGGATTGGAGCCCCTTTATCTAATGGAGTCTCTTTTTGGGGACTTGGTTTTTTTGTTTGTCCTTGTATTCTTTCATTTTTTTCTCAACGAAAGTGTGGTTCTTCATTAAAAAAAAAAAAAAAAATGTATTCAACATTGATTCATTTGAGCTTCATGTTTACTCTTTTAGCTTCTGGGGAATGGAGATTGAATGTAATGCCATCATCACGTGAATCTTCTTCTTCAATTAATCTTTGTATTATTACAATTTTACAGTTAGCATTCTCTTTGTAAGTAGGAAAATGTGCTGGCTGAATCAAGGATGATGGTTCCCGATTGTCACAAGCGTCTGGAGGCTGCCTTAGCTGATCTGAAAGGAGCATTGGTATTATCATTAGCTTTTCTTTTCATTCTTCCCTTTTTCGCTCTTCTGAAGAGCTCGATTCTTGAAGGTTTTCTGCACGTGCCCAGTTTTCATAAGTCAACTAAAACAAACCTTTTCACCTCCTCCATCTCCAGGCTGAACTGGAAAAATCAACTCAAGAGAAAGGCCCAGAATTCGATGATGCTCGGAGCACAATCGCTGAGATCGAAAGTTTCCTTAAGACGACAGAGGAATAG

mRNA sequence

ATGGCTACTGTAAAAAACCTCAAGATTAAGACAGCAACCTGCAAACGCATCATCAAGGAGTTGCATTCTTATGAGAAGGAGGTAGAGAGAGAAGCTGCCAAAACAGCTGACATGAAAGAAAAAGGAGCTGACCCTTATGACCTTAAGCAACAGGAAAATGTGCTGGCTGAATCAAGGATGATGGTTCCCGATTGTCACAAGCGTCTGGAGGCTGCCTTAGCTGATCTGAAAGGAGCATTGGCTGAACTGGAAAAATCAACTCAAGAGAAAGGCCCAGAATTCGATGATGCTCGGAGCACAATCGCTGAGATCGAAAGTTTCCTTAAGACGACAGAGGAATAG

Coding sequence (CDS)

ATGGCTACTGTAAAAAACCTCAAGATTAAGACAGCAACCTGCAAACGCATCATCAAGGAGTTGCATTCTTATGAGAAGGAGGTAGAGAGAGAAGCTGCCAAAACAGCTGACATGAAAGAAAAAGGAGCTGACCCTTATGACCTTAAGCAACAGGAAAATGTGCTGGCTGAATCAAGGATGATGGTTCCCGATTGTCACAAGCGTCTGGAGGCTGCCTTAGCTGATCTGAAAGGAGCATTGGCTGAACTGGAAAAATCAACTCAAGAGAAAGGCCCAGAATTCGATGATGCTCGGAGCACAATCGCTGAGATCGAAAGTTTCCTTAAGACGACAGAGGAATAG

Protein sequence

MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDARSTIAEIESFLKTTEE

Homology

[Close]

BLAST of Lcy01g005230 vs. ExPASy Swiss-Prot
Match: O04350 (Tubulin-folding cofactor A OS=Arabidopsis thaliana OX=3702 GN=TFCA PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 5.8e-42
Identity = 83/112 (74.11%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MAT++NLKIKT+TCKRI+KELHSYEKEVEREAAKTADMK+KGADPYDLKQQENVL ESRM
Sbjct: 1   MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRM 60

Query: 61  MVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDARSTIAEIESFLKTTE 113
           M+PDCHKRLE+ALADLK  LAELE++ +++GPE +DA+ T+A++E    T +
Sbjct: 61  MIPDCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVADVEKQFPTED 112

[Close]

BLAST of Lcy01g005230 vs. ExPASy Swiss-Prot
Match: O75347 (Tubulin-specific chaperone A OS=Homo sapiens OX=9606 GN=TBCA PE=1 SV=3)

HSP 1 Score: 76.3 bits (186), Expect = 2.6e-13
Identity = 43/102 (42.16%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 4   VKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVP 63
           V+ +KIKT   KR++KE   YEKE +++  K   M+ +  + YD+K+Q  +L ESRMM+P
Sbjct: 6   VRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIP 65

Query: 64  DCHKRLEAALADLKGALAELEKSTQEKGPEFDDARSTIAEIE 106
           DC +RLEAA  DL+  L E EK  +E   E+ +AR  +  ++
Sbjct: 66  DCQRRLEAAYLDLQRIL-ENEKDLEE-AEEYKEARLVLDSVK 105

[Close]

BLAST of Lcy01g005230 vs. ExPASy Swiss-Prot
Match: Q6PEC1 (Tubulin-specific chaperone A OS=Rattus norvegicus OX=10116 GN=Tbca PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.4e-13
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 4   VKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVP 63
           V+ +KIKT   KR++KE   YEKE +++  K   MK +  + Y +K+Q  +L ESRMM+P
Sbjct: 6   VRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQESRMMIP 65

Query: 64  DCHKRLEAALADLKGALAELEKSTQEKGPEFDDARSTIAEIE 106
           DC +RLEAA  DL+  L E EK  +E   E+ +AR  +  ++
Sbjct: 66  DCQRRLEAAYTDLRQIL-ESEKDLEE-AEEYKEARIVLDSVK 105

[Close]

BLAST of Lcy01g005230 vs. ExPASy Swiss-Prot
Match: P80585 (Tubulin-specific chaperone A OS=Gallus gallus OX=9031 GN=TBCA PE=1 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 5.7e-13
Identity = 44/102 (43.14%), Postives = 63/102 (61.76%), Query Frame = 0


Query: 4   VKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVP 63
           ++ +KIKT   KR+ KE   YEKE +++  K   MK +  D Y +K+Q  +L ESRMM+P
Sbjct: 6   LRQIKIKTGVVKRLAKEKVMYEKEAKQQEEKIEKMKAEACDDYGIKKQAEILQESRMMIP 65

Query: 64  DCHKRLEAALADLKGALAELEKSTQEKGPEFDDARSTIAEIE 106
           DC +RLE A ADL   L E EK  +E   E+ +ARS +  ++
Sbjct: 66  DCQRRLEIAHADLT-QLLENEKELEE-AEEYKEARSILESVK 105

[Close]

BLAST of Lcy01g005230 vs. ExPASy Swiss-Prot
Match: P48428 (Tubulin-specific chaperone A OS=Mus musculus OX=10090 GN=Tbca PE=1 SV=3)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-12
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 4   VKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVP 63
           V+ +KIKT   +R++KE   YEKE +++  K   MK +  + Y +K+Q  +L ESRMM+P
Sbjct: 6   VRQIKIKTGVVRRLVKERVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQESRMMIP 65

Query: 64  DCHKRLEAALADLKGALAELEKSTQEKGPEFDDARSTIAEIE 106
           DC +RLEAA  DL+  L E EK  +E   E+ +AR  +  ++
Sbjct: 66  DCQRRLEAAYTDLQQIL-ESEKDLEE-AEEYKEARVVLDSVK 105

[Close]

BLAST of Lcy01g005230 vs. ExPASy TrEMBL
Match: A0A6J1DQ83 (Tubulin-specific chaperone A OS=Momordica charantia OX=3673 GN=LOC111022807 PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.3e-49
Identity = 105/113 (92.92%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATV+NLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVRNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDARSTIAEIESFLKTTEE 114
           M+PDCHKRLEA+LADLKGALAELE+STQEKGPEFD+ARSTI+E+E+FLKTTEE
Sbjct: 61  MIPDCHKRLEASLADLKGALAELEESTQEKGPEFDNARSTISEVENFLKTTEE 113

[Close]

BLAST of Lcy01g005230 vs. ExPASy TrEMBL
Match: A0A6J1KV46 (Tubulin-specific chaperone A OS=Cucurbita maxima OX=3661 GN=LOC111498976 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 8.7e-49
Identity = 107/113 (94.69%), Postives = 108/113 (95.58%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDARSTIAEIESFLKTTEE 114
           MVPDCHKRLE+ALADLKG L ELEKSTQ KGPEFDDARS I EIESFLKTTEE
Sbjct: 61  MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTEE 113

[Close]

BLAST of Lcy01g005230 vs. ExPASy TrEMBL
Match: A0A6J1H416 (Tubulin-specific chaperone A OS=Cucurbita moschata OX=3662 GN=LOC111460224 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.1e-48
Identity = 107/113 (94.69%), Postives = 108/113 (95.58%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDARSTIAEIESFLKTTEE 114
           MVPDCHKRLEAALADLKG L ELEKSTQ KGPEF+DARS I EIESFLKTTEE
Sbjct: 61  MVPDCHKRLEAALADLKGTLDELEKSTQVKGPEFEDARSIITEIESFLKTTEE 113

[Close]

BLAST of Lcy01g005230 vs. ExPASy TrEMBL
Match: A0A5D3DLX2 (Tubulin-specific chaperone A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00640 PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.7e-47
Identity = 104/113 (92.04%), Postives = 108/113 (95.58%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRI+KEL SYEKEVEREA+KTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 128 MATVKNLKIKTATCKRILKELFSYEKEVEREASKTADMKEKGADPYDLKQQENVLAESRM 187

Query: 61  MVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDARSTIAEIESFLKTTEE 114
           MVPDCHKRLE ALADLK ALAELEKST+EKGPEFDDARSTI +IESFLK TEE
Sbjct: 188 MVPDCHKRLEVALADLKEALAELEKSTEEKGPEFDDARSTINDIESFLKPTEE 240

[Close]

BLAST of Lcy01g005230 vs. ExPASy TrEMBL
Match: A0A5A7T9L5 (Tubulin-specific chaperone A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G002620 PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.7e-47
Identity = 104/113 (92.04%), Postives = 108/113 (95.58%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRI+KEL SYEKEVEREA+KTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREASKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDARSTIAEIESFLKTTEE 114
           MVPDCHKRLE ALADLK ALAELEKST+EKGPEFDDARSTI +IESFLK TEE
Sbjct: 61  MVPDCHKRLEVALADLKEALAELEKSTEEKGPEFDDARSTINDIESFLKPTEE 113

[Close]

BLAST of Lcy01g005230 vs. NCBI nr
Match: XP_022155762.1 (tubulin-folding cofactor A [Momordica charantia])

HSP 1 Score: 205.3 bits (521), Expect = 2.8e-49
Identity = 105/113 (92.92%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATV+NLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVRNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDARSTIAEIESFLKTTEE 114
           M+PDCHKRLEA+LADLKGALAELE+STQEKGPEFD+ARSTI+E+E+FLKTTEE
Sbjct: 61  MIPDCHKRLEASLADLKGALAELEESTQEKGPEFDNARSTISEVENFLKTTEE 113

[Close]

BLAST of Lcy01g005230 vs. NCBI nr
Match: XP_038907024.1 (tubulin-folding cofactor A [Benincasa hispida])

HSP 1 Score: 203.4 bits (516), Expect = 1.1e-48
Identity = 107/113 (94.69%), Postives = 110/113 (97.35%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRIIKELHSYEKEVE EAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEIEAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDARSTIAEIESFLKTTEE 114
           MVPDCHKRLE+AL DLKGALAELEKSTQEKGPEF+DARSTI EIESFL+TTEE
Sbjct: 61  MVPDCHKRLESALVDLKGALAELEKSTQEKGPEFNDARSTITEIESFLQTTEE 113

[Close]

BLAST of Lcy01g005230 vs. NCBI nr
Match: XP_023006149.1 (tubulin-folding cofactor A [Cucurbita maxima] >XP_023006150.1 tubulin-folding cofactor A [Cucurbita maxima] >XP_023006151.1 tubulin-folding cofactor A [Cucurbita maxima] >XP_023006152.1 tubulin-folding cofactor A [Cucurbita maxima])

HSP 1 Score: 202.6 bits (514), Expect = 1.8e-48
Identity = 107/113 (94.69%), Postives = 108/113 (95.58%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDARSTIAEIESFLKTTEE 114
           MVPDCHKRLE+ALADLKG L ELEKSTQ KGPEFDDARS I EIESFLKTTEE
Sbjct: 61  MVPDCHKRLESALADLKGTLDELEKSTQVKGPEFDDARSIITEIESFLKTTEE 113

[Close]

BLAST of Lcy01g005230 vs. NCBI nr
Match: XP_022959143.1 (tubulin-folding cofactor A [Cucurbita moschata] >XP_022959144.1 tubulin-folding cofactor A [Cucurbita moschata] >XP_022959145.1 tubulin-folding cofactor A [Cucurbita moschata] >XP_022959146.1 tubulin-folding cofactor A [Cucurbita moschata])

HSP 1 Score: 202.2 bits (513), Expect = 2.4e-48
Identity = 107/113 (94.69%), Postives = 108/113 (95.58%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDARSTIAEIESFLKTTEE 114
           MVPDCHKRLEAALADLKG L ELEKSTQ KGPEF+DARS I EIESFLKTTEE
Sbjct: 61  MVPDCHKRLEAALADLKGTLDELEKSTQVKGPEFEDARSIITEIESFLKTTEE 113

[Close]

BLAST of Lcy01g005230 vs. NCBI nr
Match: XP_023548059.1 (tubulin-folding cofactor A [Cucurbita pepo subsp. pepo] >XP_023548060.1 tubulin-folding cofactor A [Cucurbita pepo subsp. pepo] >XP_023548061.1 tubulin-folding cofactor A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201.4 bits (511), Expect = 4.0e-48
Identity = 106/113 (93.81%), Postives = 108/113 (95.58%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDARSTIAEIESFLKTTEE 114
           MVPDCHKRLE+ALADLKG L ELEKSTQ +GPEFDDARS I EIESFLKTTEE
Sbjct: 61  MVPDCHKRLESALADLKGTLDELEKSTQVRGPEFDDARSIITEIESFLKTTEE 113

[Close]

BLAST of Lcy01g005230 vs. TAIR 10
Match: AT2G30410.1 (tubulin folding cofactor A (KIESEL) )

HSP 1 Score: 171.4 bits (433), Expect = 4.1e-43
Identity = 83/112 (74.11%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MAT++NLKIKT+TCKRI+KELHSYEKEVEREAAKTADMK+KGADPYDLKQQENVL ESRM
Sbjct: 1   MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRM 60

Query: 61  MVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDARSTIAEIESFLKTTE 113
           M+PDCHKRLE+ALADLK  LAELE++ +++GPE +DA+ T+A++E    T +
Sbjct: 61  MIPDCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVADVEKQFPTED 112

[Close]

BLAST of Lcy01g005230 vs. TAIR 10
Match: AT2G30410.2 (tubulin folding cofactor A (KIESEL) )

HSP 1 Score: 171.4 bits (433), Expect = 4.1e-43
Identity = 83/112 (74.11%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MAT++NLKIKT+TCKRI+KELHSYEKEVEREAAKTADMK+KGADPYDLKQQENVL ESRM
Sbjct: 1   MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRM 60

Query: 61  MVPDCHKRLEAALADLKGALAELEKSTQEKGPEFDDARSTIAEIESFLKTTE 113
           M+PDCHKRLE+ALADLK  LAELE++ +++GPE +DA+ T+A++E    T +
Sbjct: 61  MIPDCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVADVEKQFPTED 112

The following BLAST results are available for this feature:

BLAST of Lcy01g005230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04350	5.8e-42	74.11	Tubulin-folding cofactor A OS=Arabidopsis thaliana OX=3702 GN=TFCA PE=1 SV=2	[more]
O75347	2.6e-13	42.16	Tubulin-specific chaperone A OS=Homo sapiens OX=9606 GN=TBCA PE=1 SV=3	[more]
Q6PEC1	4.4e-13	42.16	Tubulin-specific chaperone A OS=Rattus norvegicus OX=10116 GN=Tbca PE=1 SV=1	[more]
P80585	5.7e-13	43.14	Tubulin-specific chaperone A OS=Gallus gallus OX=9031 GN=TBCA PE=1 SV=2	[more]
P48428	1.3e-12	41.18	Tubulin-specific chaperone A OS=Mus musculus OX=10090 GN=Tbca PE=1 SV=3	[more]

BLAST of Lcy01g005230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DQ83	1.3e-49	92.92	Tubulin-specific chaperone A OS=Momordica charantia OX=3673 GN=LOC111022807 PE=3...	[more]
A0A6J1KV46	8.7e-49	94.69	Tubulin-specific chaperone A OS=Cucurbita maxima OX=3661 GN=LOC111498976 PE=3 SV...	[more]
A0A6J1H416	1.1e-48	94.69	Tubulin-specific chaperone A OS=Cucurbita moschata OX=3662 GN=LOC111460224 PE=3 ...	[more]
A0A5D3DLX2	3.7e-47	92.04	Tubulin-specific chaperone A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7T9L5	3.7e-47	92.04	Tubulin-specific chaperone A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]

BLAST of Lcy01g005230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155762.1	2.8e-49	92.92	tubulin-folding cofactor A [Momordica charantia]	[more]
XP_038907024.1	1.1e-48	94.69	tubulin-folding cofactor A [Benincasa hispida]	[more]
XP_023006149.1	1.8e-48	94.69	tubulin-folding cofactor A [Cucurbita maxima] >XP_023006150.1 tubulin-folding co...	[more]
XP_022959143.1	2.4e-48	94.69	tubulin-folding cofactor A [Cucurbita moschata] >XP_022959144.1 tubulin-folding ...	[more]
XP_023548059.1	4.0e-48	93.81	tubulin-folding cofactor A [Cucurbita pepo subsp. pepo] >XP_023548060.1 tubulin-...	[more]

BLAST of Lcy01g005230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30410.1	4.1e-43	74.11	tubulin folding cofactor A (KIESEL)	[more]
AT2G30410.2	4.1e-43	74.11	tubulin folding cofactor A (KIESEL)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 14..41
None	No IPR available	COILS	Coil	Coil	coord: 66..89
None	No IPR available	GENE3D	1.20.58.90		coord: 1..113 e-value: 1.6E-41 score: 143.0
None	No IPR available	PANTHER	PTHR21500:SF4	TUBULIN-SPECIFIC CHAPERONE A	coord: 1..113
IPR004226	Tubulin binding cofactor A	PFAM	PF02970	TBCA	coord: 7..86 e-value: 6.2E-28 score: 97.0
IPR004226	Tubulin binding cofactor A	PANTHER	PTHR21500	TUBULIN-SPECIFIC CHAPERONE A	coord: 1..113
IPR036126	Tubulin binding cofactor A superfamily	SUPERFAMILY	46988	Tubulin chaperone cofactor A	coord: 3..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g005230.1	Lcy01g005230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007023	post-chaperonin tubulin folding pathway
biological_process	GO:0007021	tubulin complex assembly
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005874	microtubule
molecular_function	GO:0048487	beta-tubulin binding