Lcy01g004860 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g004860
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Prefoldin chaperone subunit family protein
Location	Chr01: 6717771 .. 6719188 (+)
RNA-Seq Expression	Lcy01g004860
Synteny	Lcy01g004860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCAATCGAATCAAGAGTGACATCAGTCGGAAAATGGCTGCCGGAGGTGGTTTTGGCGCGGCGGCGGCGGCGCTCCCGTCGAAAACGATCGAAGAGCAGAAACTGGAAATCACTAGAGAGATGAGAAGTCATGAGGTCGCCATTGCAGAGCTCAATCATCTTTCCTCTTCCAGAGTAAGCCCTACCGCGCCCTTTCTACAGCTGTTTATTGTTCTTGTTCAAATTTGAACTTGAAGTAGAACGATGTAATAGCATTCTGTTTGAAAAATTGTTCGGACTCTGCCTGTTTTCCTTATTCTGCGGGATATTTTGCTAATCGCTCGCCATGACTAACATTTTGGACGTAGTTTTCGATCGTATCCACTAATATCTAGGGTACAGTGGAATTAAAATATTTGTTACATGTTAATCTAGGGTTTAAATCTTCCAGTAATTGGTGAATTCTTTTTGCTGAACTCGTCTTCTTTTGAACTCGTTTCTTAAACATGCAACGAATTTATGGTTTTTTTATGAATTTGATGATGTAAACTACTTGATTAATTTACTGATTTATTTCTTAGAAGAATGATTGTATTTTGCTTGCTTTATTTTTCTTGAGCTACAATGAAGGATTAAAACGTCTCGATTTTATAGAAATGTCTATGAAAATATGGATGTGAATTAATATTCTTACAAACATCATGAAAATAAAAAGTTGTAATTATCGATTAATTTCTAACATTGATATCAAATTCTTTCATTTCTGAAAAGTGAAAATATTAGGGGAAACATTGATATGTGGATGAACAACACATGACATGAAAAGGATTAAGATGAACTGCCATTGCCTCTCTCTAAGCAACCTTTTACTAAATGTAGATTCCTGATGTTGTTACAAATTGCAGGCTGTCTTTCAGAAAAATGGAAACATATTCTTCCGCACAACTGTTCAGAAGGCAACAACTTCCGAACAGAGTAAGAAAATTGCTTTAGTAAACTTCTACACCCCCAATGTTTTATGCCTTCCCTCTCAACCCCCACCCATGGTTGTAAATTTACTTCCACATTTTAGGTATTTCCATCAATATTTCTATCAGTGAGTGAGTTTTGAATTTTGATATCCATGTGAGGAAGAAAATTTATTTTATGAAATCTAATTGTTAATATTTAAATAAATAAATGATGATTTATAACTTATTGTGAAAATGTTAAGCTTCATCTGTGAGTTCAAATAGTTTTTGAGATCTTAATATGTGCATGATCTTTCTGTTTGACCTTGGCATGGCATCTTCGACATTGATGAAATGTTAAATTACAAATTTGGTCCTTATAGTTTGGAGAAAATTAGAGTTTAGTCTTAATGGTTTTAAATTGAGAATTCTGTATTTTGTTACTATGGTTTGATAAAACCTCATTAAATAGTCTCTATCACATACTC

mRNA sequence

AAGCAATCGAATCAAGAGTGACATCAGTCGGAAAATGGCTGCCGGAGGTGGTTTTGGCGCGGCGGCGGCGGCGCTCCCGTCGAAAACGATCGAAGAGCAGAAACTGGAAATCACTAGAGAGATGAGAAGTCATGAGGTCGCCATTGCAGAGCTCAATCATCTTTCCTCTTCCAGAGCTGTCTTTCAGAAAAATGGAAACATATTCTTCCGCACAACTGTTCAGAAGGCAACAACTTCCGAACAGAGTAAGAAAATTGCTTTAGTAAACTTCTACACCCCCAATGTTTTATGCCTTCCCTCTCAACCCCCACCCATGGTTGTAAATTTACTTCCACATTTTAGGTATTTCCATCAATATTTCTATCAGTGAGTGAGTTTTGAATTTTGATATCCATGTGAGGAAGAAAATTTATTTTATGAAATCTAATTGTTAATATTTAAATAAATAAATGATGATTTATAACTTATTGTGAAAATGTTAAGCTTCATCTGTGAGTTCAAATAGTTTTTGAGATCTTAATATGTGCATGATCTTTCTGTTTGACCTTGGCATGGCATCTTCGACATTGATGAAATGTTAAATTACAAATTTGGTCCTTATAGTTTGGAGAAAATTAGAGTTTAGTCTTAATGGTTTTAAATTGAGAATTCTGTATTTTGTTACTATGGTTTGATAAAACCTCATTAAATAGTCTCTATCACATACTC

Coding sequence (CDS)

ATGGCTGCCGGAGGTGGTTTTGGCGCGGCGGCGGCGGCGCTCCCGTCGAAAACGATCGAAGAGCAGAAACTGGAAATCACTAGAGAGATGAGAAGTCATGAGGTCGCCATTGCAGAGCTCAATCATCTTTCCTCTTCCAGAGCTGTCTTTCAGAAAAATGGAAACATATTCTTCCGCACAACTGTTCAGAAGGCAACAACTTCCGAACAGAGTAAGAAAATTGCTTTAGTAAACTTCTACACCCCCAATGTTTTATGCCTTCCCTCTCAACCCCCACCCATGGTTGTAAATTTACTTCCACATTTTAGGTATTTCCATCAATATTTCTATCAGTGA

Protein sequence

MAAGGGFGAAAAALPSKTIEEQKLEITREMRSHEVAIAELNHLSSSRAVFQKNGNIFFRTTVQKATTSEQSKKIALVNFYTPNVLCLPSQPPPMVVNLLPHFRYFHQYFYQ

Homology

[Close]

BLAST of Lcy01g004860 vs. ExPASy TrEMBL
Match: A0A6J1HJ49 (uncharacterized protein LOC111464527 OS=Cucurbita moschata OX=3662 GN=LOC111464527 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.7e-23
Identity = 62/72 (86.11%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 1  MAAGGGFGAAAAALPSKTIEEQKLEITREMRSHEVAIAELNHLSSSRAVFQKNGNIFFRT 60
          M  GGGFG  AAA PS+TIEEQKLEIT+EMRSHEV+IAELNHLSS+RAVFQKNGNIFFRT
Sbjct: 24 MPTGGGFG-TAAAFPSRTIEEQKLEITKEMRSHEVSIAELNHLSSTRAVFQKNGNIFFRT 83

Query: 61 TVQKATTSEQSK 73
          TVQKATTSEQ K
Sbjct: 84 TVQKATTSEQKK 94

[Close]

BLAST of Lcy01g004860 vs. ExPASy TrEMBL
Match: A0A6J1KIB7 (uncharacterized protein LOC111494702 OS=Cucurbita maxima OX=3661 GN=LOC111494702 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 8.1e-23
Identity = 61/72 (84.72%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 1  MAAGGGFGAAAAALPSKTIEEQKLEITREMRSHEVAIAELNHLSSSRAVFQKNGNIFFRT 60
          MA GGGFG  A+  PS+TIEEQKLEIT+EMRSHEV+IAELNHLSS+RAVFQKNGNIFFRT
Sbjct: 1  MATGGGFG-TASVFPSRTIEEQKLEITKEMRSHEVSIAELNHLSSTRAVFQKNGNIFFRT 60

Query: 61 TVQKATTSEQSK 73
          TVQKATTSEQ K
Sbjct: 61 TVQKATTSEQKK 71

[Close]

BLAST of Lcy01g004860 vs. ExPASy TrEMBL
Match: A0A6J1DN63 (uncharacterized protein LOC111022769 OS=Momordica charantia OX=3673 GN=LOC111022769 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 7.6e-21
Identity = 60/73 (82.19%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 1  MAAGGGF-GAAAAALPSKTIEEQKLEITREMRSHEVAIAELNHLSSSRAVFQKNGNIFFR 60
          MA GGGF   AA A PS+TIEEQKLEI + MRSHEVAIAELNHLSS RAVFQKNGN+FFR
Sbjct: 1  MAGGGGFVTVAATASPSRTIEEQKLEIAKAMRSHEVAIAELNHLSSFRAVFQKNGNLFFR 60

Query: 61 TTVQKATTSEQSK 73
          TTVQKATTSEQ K
Sbjct: 61 TTVQKATTSEQKK 73

[Close]

BLAST of Lcy01g004860 vs. ExPASy TrEMBL
Match: A0A0A0LK18 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G118320 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 7.1e-19
Identity = 57/72 (79.17%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 1  MAAGGGFGAAAAALPSKTIEEQKLEITREMRSHEVAIAELNHLSSSRAVFQKNGNIFFRT 60
          MAA GG   AA+  PS T+EEQKLEIT++MRS EVAIAELNHLSS+RAVFQKNGN+FFRT
Sbjct: 1  MAADGGLSTAAS--PSITMEEQKLEITKQMRSLEVAIAELNHLSSTRAVFQKNGNLFFRT 60

Query: 61 TVQKATTSEQSK 73
          TVQKATTSEQ K
Sbjct: 61 TVQKATTSEQKK 70

[Close]

BLAST of Lcy01g004860 vs. ExPASy TrEMBL
Match: A0A1S3C672 (uncharacterized protein LOC103496917 OS=Cucumis melo OX=3656 GN=LOC103496917 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 7.1e-19
Identity = 57/72 (79.17%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 1  MAAGGGFGAAAAALPSKTIEEQKLEITREMRSHEVAIAELNHLSSSRAVFQKNGNIFFRT 60
          MAA GGF  + AA PS T EEQKLEIT++MRS EVAIAELNHLSS+RAV+QKNGN+FFRT
Sbjct: 1  MAADGGF--STAAFPSITKEEQKLEITKQMRSLEVAIAELNHLSSTRAVYQKNGNLFFRT 60

Query: 61 TVQKATTSEQSK 73
          TVQKATTSEQ K
Sbjct: 61 TVQKATTSEQKK 70

[Close]

BLAST of Lcy01g004860 vs. NCBI nr
Match: KAG6593773.1 (hypothetical protein SDJN03_13249, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.0 bits (297), Expect = 2.6e-23
Identity = 63/72 (87.50%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 1  MAAGGGFGAAAAALPSKTIEEQKLEITREMRSHEVAIAELNHLSSSRAVFQKNGNIFFRT 60
          MA GGGFG  AAA PS+TIEEQKLEIT+EMRSHEV+IAELNHLSS+RAVFQKNGNIFFRT
Sbjct: 1  MATGGGFG-TAAAFPSRTIEEQKLEITKEMRSHEVSIAELNHLSSTRAVFQKNGNIFFRT 60

Query: 61 TVQKATTSEQSK 73
          TVQKATTSEQ K
Sbjct: 61 TVQKATTSEQKK 71

[Close]

BLAST of Lcy01g004860 vs. NCBI nr
Match: KAG7026105.1 (Mechanosensitive ion channel protein 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.9 bits (294), Expect = 5.7e-23
Identity = 63/72 (87.50%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 1   MAAGGGFGAAAAALPSKTIEEQKLEITREMRSHEVAIAELNHLSSSRAVFQKNGNIFFRT 60
           MA GGGFG  AAA PS TIEEQKLEIT+EMRSHEV+IAELNHLSS+RAVFQKNGNIFFRT
Sbjct: 623 MATGGGFG-TAAAFPSTTIEEQKLEITKEMRSHEVSIAELNHLSSTRAVFQKNGNIFFRT 682

Query: 61  TVQKATTSEQSK 73
           TVQKATTSEQ K
Sbjct: 683 TVQKATTSEQKK 693

[Close]

BLAST of Lcy01g004860 vs. NCBI nr
Match: XP_023514719.1 (uncharacterized protein LOC111778937 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117.1 bits (292), Expect = 9.8e-23
Identity = 62/72 (86.11%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 1  MAAGGGFGAAAAALPSKTIEEQKLEITREMRSHEVAIAELNHLSSSRAVFQKNGNIFFRT 60
          MA GGGFG  AA  PS+TIEEQKLEIT+EMRSHEV+IAELNHLSS+RAVFQKNGNIFFRT
Sbjct: 1  MATGGGFG-TAAEFPSRTIEEQKLEITKEMRSHEVSIAELNHLSSTRAVFQKNGNIFFRT 60

Query: 61 TVQKATTSEQSK 73
          TVQKATTSEQ K
Sbjct: 61 TVQKATTSEQKK 71

[Close]

BLAST of Lcy01g004860 vs. NCBI nr
Match: XP_022964526.1 (uncharacterized protein LOC111464527 [Cucurbita moschata])

HSP 1 Score: 117.1 bits (292), Expect = 9.8e-23
Identity = 62/72 (86.11%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 1  MAAGGGFGAAAAALPSKTIEEQKLEITREMRSHEVAIAELNHLSSSRAVFQKNGNIFFRT 60
          M  GGGFG  AAA PS+TIEEQKLEIT+EMRSHEV+IAELNHLSS+RAVFQKNGNIFFRT
Sbjct: 24 MPTGGGFG-TAAAFPSRTIEEQKLEITKEMRSHEVSIAELNHLSSTRAVFQKNGNIFFRT 83

Query: 61 TVQKATTSEQSK 73
          TVQKATTSEQ K
Sbjct: 84 TVQKATTSEQKK 94

[Close]

BLAST of Lcy01g004860 vs. NCBI nr
Match: XP_023000435.1 (uncharacterized protein LOC111494702 [Cucurbita maxima])

HSP 1 Score: 116.3 bits (290), Expect = 1.7e-22
Identity = 61/72 (84.72%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 1  MAAGGGFGAAAAALPSKTIEEQKLEITREMRSHEVAIAELNHLSSSRAVFQKNGNIFFRT 60
          MA GGGFG  A+  PS+TIEEQKLEIT+EMRSHEV+IAELNHLSS+RAVFQKNGNIFFRT
Sbjct: 1  MATGGGFG-TASVFPSRTIEEQKLEITKEMRSHEVSIAELNHLSSTRAVFQKNGNIFFRT 60

Query: 61 TVQKATTSEQSK 73
          TVQKATTSEQ K
Sbjct: 61 TVQKATTSEQKK 71

[Close]

BLAST of Lcy01g004860 vs. TAIR 10
Match: AT1G49245.1 (Prefoldin chaperone subunit family protein )

HSP 1 Score: 54.7 bits (130), Expect = 5.6e-08
Identity = 24/59 (40.68%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 14 LPSKTIEEQKLEITREMRSHEVAIAELNHLSSSRAVFQKNGNIFFRTTVQKATTSEQSK 73
          + + T  +++ E+ +E++  EV++ EL+ LSSSR+++QKNGN+FF T+ +KA  S Q +
Sbjct: 1  MATTTSSDREFELEKEIKRQEVSLDELSSLSSSRSIYQKNGNLFFLTSAEKAKISAQKQ 59

The following BLAST results are available for this feature:

BLAST of Lcy01g004860 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy01g004860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HJ49	4.7e-23	86.11	uncharacterized protein LOC111464527 OS=Cucurbita moschata OX=3662 GN=LOC1114645...	[more]
A0A6J1KIB7	8.1e-23	84.72	uncharacterized protein LOC111494702 OS=Cucurbita maxima OX=3661 GN=LOC111494702...	[more]
A0A6J1DN63	7.6e-21	82.19	uncharacterized protein LOC111022769 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A0A0LK18	7.1e-19	79.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G118320 PE=3 SV=1	[more]
A0A1S3C672	7.1e-19	79.17	uncharacterized protein LOC103496917 OS=Cucumis melo OX=3656 GN=LOC103496917 PE=...	[more]

BLAST of Lcy01g004860 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593773.1	2.6e-23	87.50	hypothetical protein SDJN03_13249, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7026105.1	5.7e-23	87.50	Mechanosensitive ion channel protein 10, partial [Cucurbita argyrosperma subsp. ...	[more]
XP_023514719.1	9.8e-23	86.11	uncharacterized protein LOC111778937 [Cucurbita pepo subsp. pepo]	[more]
XP_022964526.1	9.8e-23	86.11	uncharacterized protein LOC111464527 [Cucurbita moschata]	[more]
XP_023000435.1	1.7e-22	84.72	uncharacterized protein LOC111494702 [Cucurbita maxima]	[more]

BLAST of Lcy01g004860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49245.1	5.6e-08	40.68	Prefoldin chaperone subunit family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002777	Prefoldin beta-like	PFAM	PF01920	Prefoldin_2	coord: 18..68 e-value: 1.8E-6 score: 27.9
IPR009053	Prefoldin	GENE3D	1.10.287.370		coord: 15..78 e-value: 4.1E-6 score: 28.5
None	No IPR available	SUPERFAMILY	46579	Prefoldin	coord: 18..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g004860.1	Lcy01g004860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
cellular_component	GO:0016272	prefoldin complex
molecular_function	GO:0051082	unfolded protein binding