Lcy01g004410 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g004410
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Actin-related protein 2/3 complex subunit 4
Location	Chr01: 5681933 .. 5687355 (+)
RNA-Seq Expression	Lcy01g004410
Synteny	Lcy01g004410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTGGACTCAACGATGTGGTTGGATACATGATTATTGGGAGGAAACTCGAGTGAATGGGCGGAGTATTCCATTACATGTTCAGCTTCAGGAACGATCATCACAACCACGGGAGGACATTGTTCGGCTTCATACGTATGCATCCGTCGATCCTCGACGGGGCGGAGCTGGATACGGAGCGACCATCACCTATTTGGATGGTATTATTTGTGGAGCTTTGGAGTTTAAGGACCCGACGCATCTTTCTCCTCTGGCAGCAGAAGTTAATGCAATTATTCATGGTATACGGCTCCTAAAGCGTATGAATATTTCTTCTGCTTGTGTTCTTTCTAACTCCCTCTCAGCGATAAAAATGATCCAAGGGGAATTGGAATTAACAATCCATGTGCATCATTGGATTACCCAAATCCAAACGATGATACCTTCTTTTCAGAATATATCATTCAGTCATATTTCTAGGGAAGGGAATATGAGAGCTGATTATCTAGCTAAGGATGCTTTAGCTAATAGTTGATCTATGCTTTGGCTAGAGGATTGTCCACAGTGGCTTACGTCAATGAGTAATTTTATTCATTGCAAATGTCACCTTCGATGTACTTGTTCAAATTATTGAAATGAAAGGTCTTTGTTATAAAAAATATATATATATATAACAAAAAAAAATCTCAAATAGCTCATTTACCAAGATTTCTCTTTTTTTTTTTTTTATTTATTGAAAGCAAGCATGATTTTTGAAAAGTTATTCGTATTTTCTTGTTTGCTTCTTTCACTTTTTGAATTACTTCTAAAATACTTAAAACTATTAGTAGATTTATTCTATGATCTTGCTTAGTATCGAATGCATTTTTAATAATTTTCTTTTTTTAAAAAAAAGACTTGTAATATTCATTTTCAGTTTTTAGAATATGCATTTTTAGGGGTAAGTATTGAAATGTGAATTCCAAATATTATTGGAATTTTTTCATGTCAAAATAAATAGGACCATTAATTAAGTAGTCTTTATAAAAAAAATGTTGTATTTTTTTTTTTTTTAATGTTGCAATTTTTAGTTTAAACTTGATTAAGTTTTAATTTTTATCCCTTTGACAATTAGAAATGTTGATGAAAATTCTCTTAGGTGCATTTTAATGTTGGTACTATATATTTTTTTTTGTGACAATTTTGCAATTTTTACTTTGAACTTGATTAATGGTTCATTTTTATCCCTTTGAAAAACTCATTTAAAAATATTGATGAAAATATTCTCACGTACGTTTCATGAATATTAAGTTCCAAATAAAAACAATGCTAGAGTTGTTTTTATTTTTACTTTTTTTTTGTCGAAATCTATAAGCTTTGAAAGATTTGTACAATCAATAGTCTTGTGCATTAATCAAACTTAATTTTGTGCAATGATTCATTTTGATTCAAATTAGTAAGTTTGAGTGATTTTTTCTATATTTTTTGCAAAAATTAATAGGTCAGTTTTGTGGAAATCGCATATAAAGTAAAAATGACATCACATATTTAAGTTAAAGCTCATATGAAATGGAAAGTTTACTAGAAAAATAGATTAAAAAATAAATAATAATTTTGTTTTTTGGAAAAAAATAATACATATTTTGTATTATATATATCTAATGCGATTATGTTTCAATAATTCGACCTTACCTCAGTTGGTAGAGCGGACGCCTGTAGGAGAAAGCAGCTTCAATATTCAGGTCGCTGGTTCGAATCCGTTATGTCGGATTTTTTTCTCTCATTTTTAAAATTTTAATTTTCTAATTAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGAAGCGTTCTTTCCTTTGCTTTTTTGCTTTCTCCGGCGTCGGATTTTTGGAGCCTGGAGCGCATTCTACCTATAATCCCGTACTCTTGCGAGCTCACTGCACGATCCAGCCATTTTTCTCCATCCAAGTTTTCAGTACAGCGCGGGAATTTTGATCTCCGGAACGTACTCTCTCGAATTCAGAAATGGTTCGTATTCTTCTCACCGTTGATCTTTGCTTCGTTTGAATTTGTCTATCTGAGTCGTGTTAATCTGCTGCCTGAATGATGAGAAGATCATTGCGAGTGAAGTTCGTTTGTTTTACTTAGCAATGTCCGATTTAACTCGTATTCCTAATGAAATTGATGGTGTTAATGGACAAAGTCGCTTCTGGATTCGAAAACGTTTTCCGATTCCTTCTTAGTATTGAGATGGCTTGTGGAGGAAGCAAGCTTCTTTTTTCCATTTCTCTTCCTACCTAATTTTCCGTCTGTATATGCAAACTCAGGCAAGTGCTTTACGCTTGTATTTGACATGCATACGGAACACTCTTGAAGCCGCGATGTGCCTTCAGGAATACTTTTTCCATTTCTCTTCCTACCTAATTTTCCGTCTGCCTTCATCGTTAACGTGTTGCTGTTATTTCAATTCAATTTCGTTTGAGTGGTGACTTTTGCAGTTGGATATATTATTTCTGGAATCGAACTTATTAGGTTCTGTAAAATAGTTCGTTCTTGATTATATGAGAGTTATGTTAGCTGACTTTTCGTTCTACGGATTATTGGCTTTACGAACCTGAAGAATGCAATGTGTAAGTGCGAGTGGAAATACTTCTTTACGCATTTCTAGGTTTTCTTAATTTCTGTCCAGAAGGACGTTTGTAAGAGGAAATTAATTTATTAACTCTTTAATTTGTGACGATAAATCTAGAGAGTGCTGTGCTTTTAGAATTGTGTCTTGAAGAAGTCGAAATACTTTCTAATGCATACTCCTAGTTGAAAGAGAAAGAAGTCCTTGAACATTGATGTTGTTTTCGTTTTCCCGCATGGTTAATTCATTTTACCTCTTGGCCAAACTTTATAAACAGTCAAGCGACTCAAGTAGCCGAACTTGAATATCCCTCCAGGTCAACCATATATGTGTTAAGCGTAGTGAATATATGTGTTCTTCTGTAGTGCATTGAGTTGAGAGTGAATGAAGCTTACACCTTGCATGACTAGTTAAATTTGTGTATGGTATTCCTCCCTGATACTTTTTGAAACCATTTGTTTACTCTGTATATTTGCATTTTCTAATACAAATCTCCCTGTCTTGTCGGGCTTACTTTCACATGTTTATGGTCTTTGATTTGTCAATTTTTTCCCCACATGATTGCAGAATTTTCCTTGCCAAGAAGTTGAAAGACATAACAAGCCGGAGGTTGAACTGAATTATGCTTATGTCTTCTACATCTTAAAACTTCTTGCTGTATTTATTTTAGATTTATCATCGTTTGTGAACCACTGATGACCTGAGTTGCCTGGTTAATGATTTTATTAATAAGCTCCATGTCAATTATTCACTCAAAAACCCTCACCCTGCCTTTTGAAGTTTATTGAAAAGCAATTGAACTAGGGAACTTTAGTCTTTGCCTTTGAGATGTCTGATAGCTATTCACTTATCAATATTGCATAGAGGTATAACGTTGTGATCATTATTCTATTATTAAATCATATTTGGTTACTGCTTAGCTTTCTTGTTGGTTAGCTTATTTTAGCCAACCTCAGCTTGTATTGGTTAGTTGAATATGCTGTTGGTAGCTGGTAACAGCTACCTGTCTTGATAACTTGTATAAATACCTGCCGTGCTAATTAGCAGGCAGATAAAACAATAACTATTCAGAAAGGCTGTTTATCCCATTCTCCAAGTATTATTAGTTTCTTGCTTGCACCATAATAATTGAATCTTCACATGGAAAGGAACAATGAAAATATGCTAATTTATGCCTCTTCTCCTTTTCTTGTTTTTTTCCCCTTCCAGGACCAGCTCGGAACTTCTTCTCAATCCTGTAAGATCATGTCATAAATTTAAATAATGAGTATTCCACCATTGACCATTTAGTTAGTTTAAACTATTAGTGGTGATAGTGAGAAACACCAAGCATTCATGACACCTTTGACTTTCAGACTAGAACCTAGTTATGCCTCATTATGTGTAACTGTTTTCTGTGAAGGAATTTTGAATTTCCCACAATGGATCAATTTTTTTCTGCTGCAAATTGCTATTAAATAAATGTCAGCGAATGAACATGTAATTTTAGTTAAACATTTTTTTCGCGTCTTTTCCTTTTAAATTTGAGAATCATGTTCATGCAAAGAACATCTTTGGGAGTTGGGAGTAGCTGAGGGAATGGCTTTTTATGTTTATATAACTGTGATATGTTGATGGACATCTATGATCTCCCATTAATGTTTTGCTCTTGCAGATCTTAATCTGTCGAAATGAGTCAGAGAAGTGTTTGATCGAGACATCTATAAATTCACTTCGCATCAGTCTCAAGGTGATTTTATTTTCTTTTTAATTTTAATTTATGGGCTAGGTAAATTTTGATGAATTCTGTTTACATTCTCTGCTGATCATGATTAGGCACAAAGAGATGGGTACCTAAGTCCTGTGGGCCATTTTAACTGCTTAAAGTGCTTCTTTGAATTGGAGCTAGTTCTTTAGGGATTTTCTCATGGATTGAGTTGAATTCTTAATATTGGAGTCAGTATCTGGATCCTCAACTAGATACAAGAACCGCTAGGTTATGCATATGTGCAAGTGTAAAAGCAGATTTTAGCAGCTAAGAAGGGTAGTTGTATATTATTGGTTTTTGGTCAGTTTTTTAACAGTCAACTATCCGTCAGGTTTGTCCAGAAGGTTTAATTTCAACTTCTCGTTGGGATTTATTTGAGGTCTAGGCCATCTTCGGTCTGGGTTCTGTAGTTTTATGTTTGTGCAGTTTTATGTTGGCAATTTGAAAGGAGTAGCAGTTTTTTAGAGAACTTTGGAGAGTTTCGTTCATTAAGGAAAAGGTCAAAAAGGGCGTGGCTTCTTATTGGACTGCTAGTTTAAAGTTTGTTCGCTGGGAATCCTTTTCTTTACTGAAATACGTGGGAAGATATAATGTATGTTTGCGGAGTATTGTTTTTCTATTCTCCATATGCTTCTTTTTATGGTTTTTTCCCTCTTAAATTTTCTTTTATCATTATGTTTATTGTGCGTTATCCTTGGATTGGATCTCATCCCGTAAACATTTCGTTTTTTTTTAAATAAAAAGGGTAGGTGTAGATGAAGGTGCTATATTTATGGTTGCAATTACAGCACAAATCTAACTTCAACCTTGAAGGCCTATGTACTGCCATTAGTCACTTTCCATCTATTCCATTACTTAAGGCTAACTCCTTTTACCCTTTCTAGCTTACCTGAAGAAAATCTGCTGAACGTATGAGATATAACATCACAAATTAACTTCAACTTGTTCGCAATTATTTTAGGGAACTCTTTCTTGTGCATAGGTTAAGCAGACAGATGAACTGGAGAACATCCTGACTAAAAAGTTTCTTCGTTTTTATCAACGAGGGCAGAAGCTTTCCAGGTTCTGA

mRNA sequence

ATGGAGTGGACTCAACGATGTGGTTGGATACATGATTATTGGGAGGAAACTCGAGTGAATGGGCGGAGTATTCCATTACATGTTCAGCTTCAGGAACGATCATCACAACCACGGGAGGACATTGTTCGGCTTCATACGTATGCATCCGTCGATCCTCGACGGGGCGGAGCTGGATACGGAGCGACCATCACCTATTTGGATGGTATTATTTGTGGAGCTTTGGAGTTTAAGGACCCGACGCATCTTTCTCCTCTGGCAGCAGAAGTTAATGCAATTATTCATGGTATACGGCTCCTAAAGCTTGGATATATTATTTCTGGAATCGAACTTATTAGGACCAGCTCGGAACTTCTTCTCAATCCTATCTTAATCTGTCGAAATGAGTCAGAGAAGTGTTTGATCGAGACATCTATAAATTCACTTCGCATCAGTCTCAAGGTTAAGCAGACAGATGAACTGGAGAACATCCTGACTAAAAAGTTTCTTCGTTTTTATCAACGAGGGCAGAAGCTTTCCAGGTTCTGA

Coding sequence (CDS)

ATGGAGTGGACTCAACGATGTGGTTGGATACATGATTATTGGGAGGAAACTCGAGTGAATGGGCGGAGTATTCCATTACATGTTCAGCTTCAGGAACGATCATCACAACCACGGGAGGACATTGTTCGGCTTCATACGTATGCATCCGTCGATCCTCGACGGGGCGGAGCTGGATACGGAGCGACCATCACCTATTTGGATGGTATTATTTGTGGAGCTTTGGAGTTTAAGGACCCGACGCATCTTTCTCCTCTGGCAGCAGAAGTTAATGCAATTATTCATGGTATACGGCTCCTAAAGCTTGGATATATTATTTCTGGAATCGAACTTATTAGGACCAGCTCGGAACTTCTTCTCAATCCTATCTTAATCTGTCGAAATGAGTCAGAGAAGTGTTTGATCGAGACATCTATAAATTCACTTCGCATCAGTCTCAAGGTTAAGCAGACAGATGAACTGGAGAACATCCTGACTAAAAAGTTTCTTCGTTTTTATCAACGAGGGCAGAAGCTTTCCAGGTTCTGA

Protein sequence

MEWTQRCGWIHDYWEETRVNGRSIPLHVQLQERSSQPREDIVRLHTYASVDPRRGGAGYGATITYLDGIICGALEFKDPTHLSPLAAEVNAIIHGIRLLKLGYIISGIELIRTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFYQRGQKLSRF

Homology

[Close]

BLAST of Lcy01g004410 vs. ExPASy Swiss-Prot
Match: F4JUL9 (Actin-related protein 2/3 complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=ARPC4 PE=1 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 6.3e-19
Identity = 48/54 (88.89%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 111 IRTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF 165
           ++TS ELLLNP+LICRNE+EKCLIETSINSLRISLKVKQ DELENILTKKFLRF
Sbjct: 40  LKTSPELLLNPVLICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRF 93

[Close]

BLAST of Lcy01g004410 vs. ExPASy Swiss-Prot
Match: O96625 (Actin-related protein 2/3 complex subunit 4 OS=Dictyostelium discoideum OX=44689 GN=arcD PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.7e-12
Identity = 33/57 (57.89%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 111 IRTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFYQR 168
           ++TS EL+LNP++I RN++E+ LIETSINS+RIS+ +K++DE++ IL KKF+RF Q+
Sbjct: 40  VKTSKELVLNPVIIARNKNERVLIETSINSIRISVSIKKSDEVDVILAKKFVRFLQQ 96

[Close]

BLAST of Lcy01g004410 vs. ExPASy Swiss-Prot
Match: Q641G7 (Actin-related protein 2/3 complex subunit 4 OS=Xenopus laevis OX=8355 GN=arpc4 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.2e-11
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 111 IRTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF 165
           +R+S ELLL P++I RNE EK LIE SINS+R+S+ VKQ DE+E IL  KF+RF
Sbjct: 40  VRSSKELLLQPVVISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMRF 93

[Close]

BLAST of Lcy01g004410 vs. ExPASy Swiss-Prot
Match: Q148J6 (Actin-related protein 2/3 complex subunit 4 OS=Bos taurus OX=9913 GN=ARPC4 PE=1 SV=3)

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-10
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 111 IRTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF 165
           +R+S ELLL P+ I RNE EK LIE SINS+R+S+ VKQ DE+E IL  KF+RF
Sbjct: 40  VRSSKELLLQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMRF 93

[Close]

BLAST of Lcy01g004410 vs. ExPASy Swiss-Prot
Match: P59998 (Actin-related protein 2/3 complex subunit 4 OS=Homo sapiens OX=9606 GN=ARPC4 PE=1 SV=3)

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-10
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 111 IRTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF 165
           +R+S ELLL P+ I RNE EK LIE SINS+R+S+ VKQ DE+E IL  KF+RF
Sbjct: 40  VRSSKELLLQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMRF 93

[Close]

BLAST of Lcy01g004410 vs. ExPASy TrEMBL
Match: A0A0A0LHM5 (Actin-related protein 2/3 complex subunit 4 OS=Cucumis sativus OX=3659 GN=Csa_2G120960 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.5e-18
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 111 IRTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF 165
           ++TSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF
Sbjct: 40  LKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF 93

[Close]

BLAST of Lcy01g004410 vs. ExPASy TrEMBL
Match: A0A1S3C5J1 (Actin-related protein 2/3 complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC103496896 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.5e-18
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 111 IRTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF 165
           ++TSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF
Sbjct: 40  LKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF 93

[Close]

BLAST of Lcy01g004410 vs. ExPASy TrEMBL
Match: A0A1S4E268 (actin-related protein 2/3 complex subunit 4 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103496896 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.5e-18
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 111 IRTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF 165
           ++TSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF
Sbjct: 21  LKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF 74

[Close]

BLAST of Lcy01g004410 vs. ExPASy TrEMBL
Match: A0A1S3C653 (Actin-related protein 2/3 complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC103496896 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.5e-18
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 111 IRTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF 165
           ++TSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF
Sbjct: 23  LKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF 76

[Close]

BLAST of Lcy01g004410 vs. ExPASy TrEMBL
Match: A0A6J1H2P7 (Actin-related protein 2/3 complex subunit 4 OS=Cucurbita moschata OX=3662 GN=LOC111459934 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 9.4e-18
Identity = 51/54 (94.44%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 111 IRTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF 165
           ++TSSEL+LNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF
Sbjct: 40  LKTSSELILNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF 93

[Close]

BLAST of Lcy01g004410 vs. NCBI nr
Match: XP_016902070.1 (PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X3 [Cucumis melo] >XP_038907197.1 actin-related protein 2/3 complex subunit 4 isoform X2 [Benincasa hispida])

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-17
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 111 IRTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF 165
           ++TSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF
Sbjct: 21  LKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF 74

[Close]

BLAST of Lcy01g004410 vs. NCBI nr
Match: XP_008457157.1 (PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X1 [Cucumis melo])

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-17
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 111 IRTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF 165
           ++TSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF
Sbjct: 40  LKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF 93

[Close]

BLAST of Lcy01g004410 vs. NCBI nr
Match: XP_008457158.1 (PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Cucumis melo] >XP_031736665.1 actin-related protein 2/3 complex subunit 4 isoform X2 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-17
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 111 IRTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF 165
           ++TSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF
Sbjct: 23  LKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF 76

[Close]

BLAST of Lcy01g004410 vs. NCBI nr
Match: XP_011649071.1 (actin-related protein 2/3 complex subunit 4 isoform X1 [Cucumis sativus] >XP_038907196.1 actin-related protein 2/3 complex subunit 4 isoform X1 [Benincasa hispida] >KGN61430.1 hypothetical protein Csa_006614 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-17
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 111 IRTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF 165
           ++TSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF
Sbjct: 40  LKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF 93

[Close]

BLAST of Lcy01g004410 vs. NCBI nr
Match: KAG7013415.1 (Actin-related protein 2/3 complex subunit 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.1 bits (248), Expect = 1.9e-17
Identity = 51/54 (94.44%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 111 IRTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF 165
           ++TSSEL+LNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF
Sbjct: 40  LKTSSELILNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF 93

[Close]

BLAST of Lcy01g004410 vs. TAIR 10
Match: AT4G14147.1 (protein binding )

HSP 1 Score: 95.5 bits (236), Expect = 4.5e-20
Identity = 48/54 (88.89%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 111 IRTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF 165
           ++TS ELLLNP+LICRNE+EKCLIETSINSLRISLKVKQ DELENILTKKFLRF
Sbjct: 40  LKTSPELLLNPVLICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRF 93

[Close]

BLAST of Lcy01g004410 vs. TAIR 10
Match: AT4G14147.2 (protein binding )

HSP 1 Score: 95.5 bits (236), Expect = 4.5e-20
Identity = 48/54 (88.89%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 111 IRTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRF 165
           ++TS ELLLNP+LICRNE+EKCLIETSINSLRISLKVKQ DELENILTKKFLRF
Sbjct: 40  LKTSPELLLNPVLICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRF 93

The following BLAST results are available for this feature:

BLAST of Lcy01g004410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JUL9	6.3e-19	88.89	Actin-related protein 2/3 complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
O96625	9.7e-12	57.89	Actin-related protein 2/3 complex subunit 4 OS=Dictyostelium discoideum OX=44689...	[more]
Q641G7	8.2e-11	62.96	Actin-related protein 2/3 complex subunit 4 OS=Xenopus laevis OX=8355 GN=arpc4 P...	[more]
Q148J6	1.4e-10	62.96	Actin-related protein 2/3 complex subunit 4 OS=Bos taurus OX=9913 GN=ARPC4 PE=1 ...	[more]
P59998	1.4e-10	62.96	Actin-related protein 2/3 complex subunit 4 OS=Homo sapiens OX=9606 GN=ARPC4 PE=...	[more]

BLAST of Lcy01g004410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHM5	5.5e-18	96.30	Actin-related protein 2/3 complex subunit 4 OS=Cucumis sativus OX=3659 GN=Csa_2G...	[more]
A0A1S3C5J1	5.5e-18	96.30	Actin-related protein 2/3 complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC103496...	[more]
A0A1S4E268	5.5e-18	96.30	actin-related protein 2/3 complex subunit 4 isoform X3 OS=Cucumis melo OX=3656 G...	[more]
A0A1S3C653	5.5e-18	96.30	Actin-related protein 2/3 complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC103496...	[more]
A0A6J1H2P7	9.4e-18	94.44	Actin-related protein 2/3 complex subunit 4 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of Lcy01g004410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902070.1	1.1e-17	96.30	PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X3 [Cucumis melo]...	[more]
XP_008457157.1	1.1e-17	96.30	PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X1 [Cucumis melo]	[more]
XP_008457158.1	1.1e-17	96.30	PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Cucumis melo]...	[more]
XP_011649071.1	1.1e-17	96.30	actin-related protein 2/3 complex subunit 4 isoform X1 [Cucumis sativus] >XP_038...	[more]
KAG7013415.1	1.9e-17	94.44	Actin-related protein 2/3 complex subunit 4 [Cucurbita argyrosperma subsp. argyr...	[more]

BLAST of Lcy01g004410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14147.1	4.5e-20	88.89	protein binding	[more]
AT4G14147.2	4.5e-20	88.89	protein binding	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008384	Actin-related protein 2/3 complex subunit 4	PFAM	PF05856	ARPC4	coord: 107..166 e-value: 8.6E-20 score: 71.0
IPR008384	Actin-related protein 2/3 complex subunit 4	PANTHER	PTHR22629	ARP2/3 COMPLEX 20 KD SUBUNIT	coord: 111..166
IPR034666	Arp2/3 complex subunit 2/4	GENE3D	3.30.1460.20		coord: 99..172 e-value: 8.7E-22 score: 79.4
IPR034666	Arp2/3 complex subunit 2/4	SUPERFAMILY	69645	Arp2/3 complex subunits	coord: 112..167
None	No IPR available	PANTHER	PTHR22629:SF0	ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 4	coord: 111..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g004410.1	Lcy01g004410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034314	Arp2/3 complex-mediated actin nucleation
biological_process	GO:0030833	regulation of actin filament polymerization
biological_process	GO:0030041	actin filament polymerization
cellular_component	GO:0005885	Arp2/3 protein complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0015629	actin cytoskeleton
molecular_function	GO:0051015	actin filament binding