Lcy01g003890 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g003890
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	small acidic protein 1
Location	Chr01: 4743856 .. 4744803 (-)
RNA-Seq Expression	Lcy01g003890
Synteny	Lcy01g003890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTCAACATTTCAGTTGAAGAGCATTTGAATAAACCGATGTGTTGAAAGGCATTCGGGCCAAGGCGCCATTGTCAGGGCTCTATCCCTCTCTTCTCACTCAGACACAAAGGCGAAGTAAGAAAAAAGAAAAGACGAAAACAACAATCAGGTAAGAATCTCGAACGAATTCGTCTTCTTTGCCTCGATTTCTCTTTCTTGTTTCTTTTGATTGGAAGCTCCTTTAATTTGCTTCATCTCGTGCAAAATCCTATTCTGATGAGAGTGACAAATCAAAGAACCAGCAAAGAAATTTCTCTCTGTCCCTTTGATTTTGTTTATTTTTCCATTCAATCACGTAGTAGAAGCAAAAAAGAGTTCGAATGACTGCTCTCTCTATGTCGATTTTGTGAAGTTCCGAAGTGAAACGTATTGGTTTTATTGTTGATTTGATTGCAGCATTGAGAGGAGAAATGAGGCCTACGCCGATGGATTTCTTTGCGGAGATGGAGGAACAGGGATCGACGGTCGCGATGGACGTGGATGATGTGGATCCACTTGAGATATTGGGCGAGGGGGTGATCTCAGCCGAGAACAAGCTCGCCGACGCCGATTTCTTCAACTCCTTCGAGGACGATTTTGATGACTCCGACATTAACTGAAAGTTATATCTGTGGTTTCATTCAAAGTACTGAATTTACTTACTGTATGTTTATTGCTTCTGTTGATGAAACAAGATGATAGATGTTAGGATGCCCTACTGTGTTTTGGGGATTTCAGCCCTTCTGTTTTCTTGATTACAAATGAAAACTCTACGTACTTGATTGGTTATTCCATAATTGCTCTTGCCTCTCAAGCATGATGGTTAACCGTGTAATCTTTGTCATTAGTTGCAAGGAAAACTAAGGAGAAGAGAGACAAAATATCCTTTTAGTATAATTGCGTGGTTGGAAAAACTTGGCCGCTCGCTT

mRNA sequence

ACTCAACATTTCAGTTGAAGAGCATTTGAATAAACCGATGTGTTGAAAGGCATTCGGGCCAAGGCGCCATTGTCAGGGCTCTATCCCTCTCTTCTCACTCAGACACAAAGGCGAAGTAAGAAAAAAGAAAAGACGAAAACAACAATCAGCATTGAGAGGAGAAATGAGGCCTACGCCGATGGATTTCTTTGCGGAGATGGAGGAACAGGGATCGACGGTCGCGATGGACGTGGATGATGTGGATCCACTTGAGATATTGGGCGAGGGGGTGATCTCAGCCGAGAACAAGCTCGCCGACGCCGATTTCTTCAACTCCTTCGAGGACGATTTTGATGACTCCGACATTAACTGAAAGTTATATCTGTGGTTTCATTCAAAGTACTGAATTTACTTACTGTATGTTTATTGCTTCTGTTGATGAAACAAGATGATAGATGTTAGGATGCCCTACTGTGTTTTGGGGATTTCAGCCCTTCTGTTTTCTTGATTACAAATGAAAACTCTACGTACTTGATTGGTTATTCCATAATTGCTCTTGCCTCTCAAGCATGATGGTTAACCGTGTAATCTTTGTCATTAGTTGCAAGGAAAACTAAGGAGAAGAGAGACAAAATATCCTTTTAGTATAATTGCGTGGTTGGAAAAACTTGGCCGCTCGCTT

Coding sequence (CDS)

ATGAGGCCTACGCCGATGGATTTCTTTGCGGAGATGGAGGAACAGGGATCGACGGTCGCGATGGACGTGGATGATGTGGATCCACTTGAGATATTGGGCGAGGGGGTGATCTCAGCCGAGAACAAGCTCGCCGACGCCGATTTCTTCAACTCCTTCGAGGACGATTTTGATGACTCCGACATTAACTGA

Protein sequence

MRPTPMDFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSDIN

Homology

[Close]

BLAST of Lcy01g003890 vs. ExPASy Swiss-Prot
Match: Q9T0H2 (Small acidic protein 1 OS=Arabidopsis thaliana OX=3702 GN=SMAP1 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.0e-15
Identity = 38/62 (61.29%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 1  MRPTPMDFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60
          MRP  +D  +EM++ GS++AMDVDD++ +EIL EG + ++NKLADADFFN F+DDFDD+D
Sbjct: 1  MRPMQLDMLSEMDDAGSSMAMDVDDLEAMEILNEGGLVSDNKLADADFFNKFDDDFDDTD 60

Query: 61 IN 63
          IN
Sbjct: 61 IN 62

[Close]

BLAST of Lcy01g003890 vs. ExPASy Swiss-Prot
Match: Q1ECS0 (Small acidic protein 2 OS=Arabidopsis thaliana OX=3702 GN=SMAP2 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.8e-05
Identity = 33/69 (47.83%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 1  MRP-TPMDFFAEMEEQGSTVAM----DVDDVDPLEILGE--GVISAENKLADADFFNSFE 60
          MRP    DF  EME  G ++ M    D DD  P+++  E  G+   + K  D+DFFN FE
Sbjct: 10 MRPMVYRDFLGEMEYPGYSMPMQMEIDEDDFGPMDMQFEVGGISPFQMKPEDSDFFNKFE 69

Query: 61 DDFDDSDIN 63
          DDFDDSDIN
Sbjct: 70 DDFDDSDIN 78

[Close]

BLAST of Lcy01g003890 vs. ExPASy TrEMBL
Match: A0A6J1KE12 (small acidic protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111494814 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.4e-24
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MRPTPMDFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60
          MRPTPM+FFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 1  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 61 IN 63
          IN
Sbjct: 61 IN 62

[Close]

BLAST of Lcy01g003890 vs. ExPASy TrEMBL
Match: A0A6J1HIH2 (small acidic protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111464345 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.4e-24
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MRPTPMDFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60
          MRPTPM+FFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 1  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 61 IN 63
          IN
Sbjct: 61 IN 62

[Close]

BLAST of Lcy01g003890 vs. ExPASy TrEMBL
Match: A0A6J1CAH2 (small acidic protein 1 OS=Momordica charantia OX=3673 GN=LOC111009862 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 7.0e-24
Identity = 60/62 (96.77%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 1  MRPTPMDFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60
          MRPTPMDFFAEMEEQGSTVAMDVDDVDPLEI  EGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 1  MRPTPMDFFAEMEEQGSTVAMDVDDVDPLEIFSEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 61 IN 63
          IN
Sbjct: 61 IN 62

[Close]

BLAST of Lcy01g003890 vs. ExPASy TrEMBL
Match: A0A0A0LNK1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G166190 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 7.7e-23
Identity = 58/62 (93.55%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1  MRPTPMDFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60
          MR +PM+FFAE+EEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 1  MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 61 IN 63
          IN
Sbjct: 61 IN 62

[Close]

BLAST of Lcy01g003890 vs. ExPASy TrEMBL
Match: A0A5A7SMJ5 (Small acidic protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00640 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.0e-22
Identity = 57/62 (91.94%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1  MRPTPMDFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60
          MR +PM+FFAE+EEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 1  MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 61 IN 63
          +N
Sbjct: 61 VN 62

[Close]

BLAST of Lcy01g003890 vs. NCBI nr
Match: KAG6593800.1 (Small acidic protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121.3 bits (303), Expect = 2.9e-24
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1   MRPTPMDFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60
           MRPTPM+FFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 42  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 101

Query: 61  IN 63
           IN
Sbjct: 102 IN 103

[Close]

BLAST of Lcy01g003890 vs. NCBI nr
Match: XP_022964281.1 (small acidic protein 1 [Cucurbita moschata] >XP_022964282.1 small acidic protein 1 [Cucurbita moschata] >XP_022964283.1 small acidic protein 1 [Cucurbita moschata] >XP_022964284.1 small acidic protein 1 [Cucurbita moschata] >XP_023000574.1 small acidic protein 1 [Cucurbita maxima] >XP_023000575.1 small acidic protein 1 [Cucurbita maxima] >XP_023000576.1 small acidic protein 1 [Cucurbita maxima] >XP_023000577.1 small acidic protein 1 [Cucurbita maxima])

HSP 1 Score: 121.3 bits (303), Expect = 2.9e-24
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MRPTPMDFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60
          MRPTPM+FFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 1  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 61 IN 63
          IN
Sbjct: 61 IN 62

[Close]

BLAST of Lcy01g003890 vs. NCBI nr
Match: KAG7026131.1 (Small acidic protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121.3 bits (303), Expect = 2.9e-24
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1   MRPTPMDFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60
           MRPTPM+FFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 53  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 112

Query: 61  IN 63
           IN
Sbjct: 113 IN 114

[Close]

BLAST of Lcy01g003890 vs. NCBI nr
Match: XP_038875245.1 (small acidic protein 1 [Benincasa hispida])

HSP 1 Score: 120.2 bits (300), Expect = 6.5e-24
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MRPTPMDFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60
          MRPTPM+FFAE+EEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 1  MRPTPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 61 IN 63
          IN
Sbjct: 61 IN 62

[Close]

BLAST of Lcy01g003890 vs. NCBI nr
Match: XP_023513491.1 (small acidic protein 1 [Cucurbita pepo subsp. pepo] >XP_023513492.1 small acidic protein 1 [Cucurbita pepo subsp. pepo] >XP_023513494.1 small acidic protein 1 [Cucurbita pepo subsp. pepo] >XP_023513495.1 small acidic protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.2 bits (300), Expect = 6.5e-24
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MRPTPMDFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60
          MRPTPM+FFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLAD+DFFNSFEDDFDDSD
Sbjct: 1  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADSDFFNSFEDDFDDSD 60

Query: 61 IN 63
          IN
Sbjct: 61 IN 62

[Close]

BLAST of Lcy01g003890 vs. TAIR 10
Match: AT4G13520.1 (small acidic protein 1 )

HSP 1 Score: 82.4 bits (202), Expect = 1.4e-16
Identity = 38/62 (61.29%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 1  MRPTPMDFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60
          MRP  +D  +EM++ GS++AMDVDD++ +EIL EG + ++NKLADADFFN F+DDFDD+D
Sbjct: 1  MRPMQLDMLSEMDDAGSSMAMDVDDLEAMEILNEGGLVSDNKLADADFFNKFDDDFDDTD 60

Query: 61 IN 63
          IN
Sbjct: 61 IN 62

[Close]

BLAST of Lcy01g003890 vs. TAIR 10
Match: AT3G24280.1 (small acidic protein 2 )

HSP 1 Score: 49.3 bits (116), Expect = 1.3e-06
Identity = 33/69 (47.83%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 1  MRP-TPMDFFAEMEEQGSTVAM----DVDDVDPLEILGE--GVISAENKLADADFFNSFE 60
          MRP    DF  EME  G ++ M    D DD  P+++  E  G+   + K  D+DFFN FE
Sbjct: 10 MRPMVYRDFLGEMEYPGYSMPMQMEIDEDDFGPMDMQFEVGGISPFQMKPEDSDFFNKFE 69

Query: 61 DDFDDSDIN 63
          DDFDDSDIN
Sbjct: 70 DDFDDSDIN 78

The following BLAST results are available for this feature:

BLAST of Lcy01g003890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T0H2	2.0e-15	61.29	Small acidic protein 1 OS=Arabidopsis thaliana OX=3702 GN=SMAP1 PE=1 SV=1	[more]
Q1ECS0	1.8e-05	47.83	Small acidic protein 2 OS=Arabidopsis thaliana OX=3702 GN=SMAP2 PE=2 SV=1	[more]

BLAST of Lcy01g003890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KE12	1.4e-24	98.39	small acidic protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111494814 PE=4 SV=1	[more]
A0A6J1HIH2	1.4e-24	98.39	small acidic protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111464345 PE=4 SV=1	[more]
A0A6J1CAH2	7.0e-24	96.77	small acidic protein 1 OS=Momordica charantia OX=3673 GN=LOC111009862 PE=4 SV=1	[more]
A0A0A0LNK1	7.7e-23	93.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G166190 PE=4 SV=1	[more]
A0A5A7SMJ5	1.0e-22	91.94	Small acidic protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9...	[more]

BLAST of Lcy01g003890 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593800.1	2.9e-24	98.39	Small acidic protein 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022964281.1	2.9e-24	98.39	small acidic protein 1 [Cucurbita moschata] >XP_022964282.1 small acidic protein...	[more]
KAG7026131.1	2.9e-24	98.39	Small acidic protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038875245.1	6.5e-24	96.77	small acidic protein 1 [Benincasa hispida]	[more]
XP_023513491.1	6.5e-24	96.77	small acidic protein 1 [Cucurbita pepo subsp. pepo] >XP_023513492.1 small acidic...	[more]

BLAST of Lcy01g003890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G13520.1	1.4e-16	61.29	small acidic protein 1	[more]
AT3G24280.1	1.3e-06	47.83	small acidic protein 2	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g003890.1	Lcy01g003890.1	mRNA