Lcy01g003650 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g003650
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	60S ribosomal protein L23
Location	Chr01: 4445357 .. 4447049 (-)
RNA-Seq Expression	Lcy01g003650
Synteny	Lcy01g003650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGCCGGCGAAAATGTCGAAGCGAGGTAAGCACAAACCCTTCATCCCTTCCTCTCTATTCTTCGCCGTTTTTCTTTTCTTCTTCATTCTTCATGTCTTCTGTTAAAGATCATGTTCTTGTTTCATTTATATCGAAAATATCCGCCGTTACTCCTTTTTATTGAGTCTGTATCGAACCCACAACTTGTTACTTGAGATCGATTTGTTGTTTGTTGGTACAGGGCGCGGAGGATCTGCAGGTAACAAGTTTAGGATGTCACTGGGTCTGCCGGTGGCGGCCACGGTGAACTGTGCCGACAACACTGGAGCCAAGAATCTGTACATCATCTCAGTCAAGGGCATCAAGGGCCGTTTGAACAGATTGCCATCGGCCTGTGTTGGAGACATGGTGATGGCCACTGTCAAAAAGGGAAAGCCCGATCTCAGGAAGAAGGTCCTTCCTGCTGTCATTGTTAGGCAGCGCAAGCCATGGCGGCGAAAGGATGGAGTTTTCATGTACTTCGAAGGTATGTATGTTTCTCTCAATAGGGATTTTGAGTAGTTGTTTATATTTTAGAAGGCACTATTATACACCTGTTCGAACTTTGATTTGGAGTTGTATTTGCCTGTTGACGTTTTCTATCTATCTCACGAGAGATGCAATGCGTGTTTTTGGCTTTGAACCCTTGTTTTTCCCGGATGGATTGCGTCTAATTGAATCTTATTCGTGGCTTTGGGCTTTTTGTTATTAACTGGTTGCCTTGCTGAATTGTGGTTGCTTGCATTTGTTCAAACCTGAGAATTCTATGATTAACATGTCTGTTGAAGCTAGACAGTCTTGTCTGTTATCTTCTATATCTATAAGGGTTCTGTGAGGAGCAGACATTAAATATATCCAAGTTTTGAGTTTGTTTGATGTTTATTTAGTCTCATTAAAGGTCATACGTTTTACTCGGGTCAAGTAGCAGACTAGGATACCGTAAAAAAAATTGAAGAACAGTAATTTTTCTTTCACAAAACTTATTTATAAAACTTTGAAAAGCGGCAGAGACTCATTGGACTGAATTAACTGTCAATGGGAATAGAAACTAAGTTTAGTAAATAGGTTCAAAGCAACTAGTTTTCTTTGTAGTTTCTCTAAGAGCACCTAAATTTGCCATTTAACCCCATCTATCTTCCAGGCATAAGTCAGGTATCCTCCTTACTGTAATGGTTGATACAGTTACGAGTCTGGTAAATTGACAGTGTCCATCGTTGCAGATGTGTTGAAGCTTTCATGCTCATATCTGCTCCATGTGGACAGTACATTGTTTGGTTTAAAATACTTCCATTCTTGATATCGTTGTTCCTTTTAGTATGAGATCATCTGCTCCAACCAGCAGATTCATGCCTATAGAAATTTAGTTTTAAAAAAAGTACTTCTGTATGCGATTTTAATTTCTTTGGCATTTGAGTACGGTTTTCTGATTTCGAAATTTATATGGTCTCTCCAGATAATGCAGGAGTGATTGTGAACCCAAAAGGAGAAATGAAAGGTCTGATTCTTTCATCAGAAAAAAGATGCACCTTCTTTTATTATAATTAACTTCTTCGGATTATGAAGTTGGTTTGTTGGTGCTGTTACAGGTTCTGCTATTACTGGTCCTATTGGAAAGGAGTGTGCGGATTTATGGCCTAGGATCGCAAGTGCAGCCAATGCTATCGTGTAGTTTTCT

mRNA sequence

CAGCCGGCGAAAATGTCGAAGCGAGGGCGCGGAGGATCTGCAGGTAACAAGTTTAGGATGTCACTGGGTCTGCCGGTGGCGGCCACGGTGAACTGTGCCGACAACACTGGAGCCAAGAATCTGTACATCATCTCAGTCAAGGGCATCAAGGGCCGTTTGAACAGATTGCCATCGGCCTGTGTTGGAGACATGGTGATGGCCACTGTCAAAAAGGGAAAGCCCGATCTCAGGAAGAAGGTCCTTCCTGCTGTCATTGTTAGGCAGCGCAAGCCATGGCGGCGAAAGGATGGAGTTTTCATGTACTTCGAAGATAATGCAGGAGTGATTGTGAACCCAAAAGGAGAAATGAAAGGTTCTGCTATTACTGGTCCTATTGGAAAGGAGTGTGCGGATTTATGGCCTAGGATCGCAAGTGCAGCCAATGCTATCGTGTAGTTTTCT

Coding sequence (CDS)

ATGTCGAAGCGAGGGCGCGGAGGATCTGCAGGTAACAAGTTTAGGATGTCACTGGGTCTGCCGGTGGCGGCCACGGTGAACTGTGCCGACAACACTGGAGCCAAGAATCTGTACATCATCTCAGTCAAGGGCATCAAGGGCCGTTTGAACAGATTGCCATCGGCCTGTGTTGGAGACATGGTGATGGCCACTGTCAAAAAGGGAAAGCCCGATCTCAGGAAGAAGGTCCTTCCTGCTGTCATTGTTAGGCAGCGCAAGCCATGGCGGCGAAAGGATGGAGTTTTCATGTACTTCGAAGATAATGCAGGAGTGATTGTGAACCCAAAAGGAGAAATGAAAGGTTCTGCTATTACTGGTCCTATTGGAAAGGAGTGTGCGGATTTATGGCCTAGGATCGCAAGTGCAGCCAATGCTATCGTGTAG

Protein sequence

MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV

Homology

[Close]

BLAST of Lcy01g003650 vs. ExPASy Swiss-Prot
Match: P49690 (60S ribosomal protein L23 OS=Arabidopsis thaliana OX=3702 GN=RPL23A PE=2 SV=3)

HSP 1 Score: 281.2 bits (718), Expect = 6.5e-75
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGG++GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]

BLAST of Lcy01g003650 vs. ExPASy Swiss-Prot
Match: Q07760 (60S ribosomal protein L23 OS=Nicotiana tabacum OX=4097 GN=RPL23 PE=2 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 3.2e-74
Identity = 136/140 (97.14%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAAT+NCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATINCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKV+PAV+VRQRKPWRRKDGVFMYFEDNAGVIVN KGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVMPAVVVRQRKPWRRKDGVFMYFEDNAGVIVNAKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]

BLAST of Lcy01g003650 vs. ExPASy Swiss-Prot
Match: Q9XEK8 (60S ribosomal protein L23 OS=Syntrichia ruralis OX=38588 GN=RPL23 PE=2 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 3.4e-68
Identity = 127/140 (90.71%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGS+GNKFRMSLGLPV A VNCADNTGAKNLY+IS  G++GRLNRLP+A VGDM
Sbjct: 1   MSKRGRGGSSGNKFRMSLGLPVGAVVNCADNTGAKNLYVIS-SGVRGRLNRLPAAAVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKV+PAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEM  SAITGP
Sbjct: 61  VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNPSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 139

[Close]

BLAST of Lcy01g003650 vs. ExPASy Swiss-Prot
Match: Q6PC14 (60S ribosomal protein L23 OS=Danio rerio OX=7955 GN=rpl23 PE=2 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 2.0e-63
Identity = 119/139 (85.61%), Postives = 129/139 (92.81%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLPSA VGDM
Sbjct: 1   MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP
Sbjct: 61  VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAI 140
           + KECADLWPRIAS A +I
Sbjct: 121 VAKECADLWPRIASNAGSI 139

[Close]

BLAST of Lcy01g003650 vs. ExPASy Swiss-Prot
Match: Q3T057 (60S ribosomal protein L23 OS=Bos taurus OX=9913 GN=RPL23 PE=2 SV=2)

HSP 1 Score: 241.9 bits (616), Expect = 4.4e-63
Identity = 118/139 (84.89%), Postives = 129/139 (92.81%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDM
Sbjct: 1   MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP
Sbjct: 61  VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAI 140
           + KECADLWPRIAS A +I
Sbjct: 121 VAKECADLWPRIASNAGSI 139

[Close]

BLAST of Lcy01g003650 vs. ExPASy TrEMBL
Match: A0A6J1HWG1 (60S ribosomal protein L23 OS=Cucurbita maxima OX=3661 GN=LOC111466895 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 4.8e-73
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]

BLAST of Lcy01g003650 vs. ExPASy TrEMBL
Match: M5WP13 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G047000 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 4.8e-73
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]

BLAST of Lcy01g003650 vs. ExPASy TrEMBL
Match: A0A6A5ND05 (Putative ribosomal protein L14P OS=Lupinus albus OX=3870 GN=Lal_00022109 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 4.8e-73
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]

BLAST of Lcy01g003650 vs. ExPASy TrEMBL
Match: A0A5N5FNP6 (60S ribosomal protein L23-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_010165 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 4.8e-73
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]

BLAST of Lcy01g003650 vs. ExPASy TrEMBL
Match: A0A7J6G5C7 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_009005 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 4.8e-73
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]

BLAST of Lcy01g003650 vs. NCBI nr
Match: KAF4364815.1 (hypothetical protein G4B88_025534 [Cannabis sativa])

HSP 1 Score: 283.5 bits (724), Expect = 1.0e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 647 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 706

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 707 VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 766

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 767 IGKECADLWPRIASAANAIV 786

[Close]

BLAST of Lcy01g003650 vs. NCBI nr
Match: XP_004296407.1 (PREDICTED: 60S ribosomal protein L23 [Fragaria vesca subsp. vesca] >XP_004486225.1 60S ribosomal protein L23 [Cicer arietinum] >XP_004493817.1 60S ribosomal protein L23 [Cicer arietinum] >XP_004495066.1 60S ribosomal protein L23 [Cicer arietinum] >XP_007144856.1 hypothetical protein PHAVU_007G189900g [Phaseolus vulgaris] >XP_007162592.1 hypothetical protein PHAVU_001G164200g [Phaseolus vulgaris] >XP_007207356.1 60S ribosomal protein L23 [Prunus persica] >XP_007227549.1 60S ribosomal protein L23 [Prunus persica] >XP_008218349.1 PREDICTED: 60S ribosomal protein L23 [Prunus mume] >XP_008224171.1 PREDICTED: 60S ribosomal protein L23 [Prunus mume] >XP_008340651.1 60S ribosomal protein L23 [Malus domestica] >XP_009334189.1 PREDICTED: 60S ribosomal protein L23 [Pyrus x bretschneideri] >XP_009343781.1 PREDICTED: 60S ribosomal protein L23 [Pyrus x bretschneideri] >XP_009357984.1 PREDICTED: 60S ribosomal protein L23 [Pyrus x bretschneideri] >XP_015901171.1 60S ribosomal protein L23 [Ziziphus jujuba] >XP_018807842.1 60S ribosomal protein L23 [Juglans regia] >XP_018827330.1 60S ribosomal protein L23 [Juglans regia] >XP_019429042.1 PREDICTED: 60S ribosomal protein L23 [Lupinus angustifolius] >XP_019429519.1 PREDICTED: 60S ribosomal protein L23 [Lupinus angustifolius] >XP_019429977.1 PREDICTED: 60S ribosomal protein L23 [Lupinus angustifolius] >XP_019440973.1 PREDICTED: 60S ribosomal protein L23 [Lupinus angustifolius] >XP_019456481.1 PREDICTED: 60S ribosomal protein L23 [Lupinus angustifolius] >XP_019456482.1 PREDICTED: 60S ribosomal protein L23 [Lupinus angustifolius] >XP_019461970.1 PREDICTED: 60S ribosomal protein L23 [Lupinus angustifolius] >XP_021828975.1 60S ribosomal protein L23-like [Prunus avium] >XP_022138768.1 60S ribosomal protein L23 [Momordica charantia] >XP_022155670.1 60S ribosomal protein L23 [Momordica charantia] >XP_022157532.1 60S ribosomal protein L23 isoform X2 [Momordica charantia] >XP_022931050.1 60S ribosomal protein L23 [Cucurbita moschata] >XP_022954154.1 60S ribosomal protein L23 [Cucurbita moschata] >XP_022954155.1 60S ribosomal protein L23 [Cucurbita moschata] >XP_022959255.1 60S ribosomal protein L23 [Cucurbita moschata] >XP_022960439.1 60S ribosomal protein L23 [Cucurbita moschata] >XP_022963606.1 60S ribosomal protein L23 [Cucurbita moschata] >XP_022964538.1 60S ribosomal protein L23 [Cucurbita moschata] >XP_022967349.1 60S ribosomal protein L23 [Cucurbita maxima] >XP_022991701.1 60S ribosomal protein L23 [Cucurbita maxima] >XP_022991702.1 60S ribosomal protein L23 [Cucurbita maxima] >XP_022996212.1 60S ribosomal protein L23 [Cucurbita maxima] >XP_023000561.1 60S ribosomal protein L23 [Cucurbita maxima] >XP_023005094.1 60S ribosomal protein L23 [Cucurbita maxima] >XP_023006089.1 60S ribosomal protein L23 [Cucurbita maxima] >XP_023515110.1 60S ribosomal protein L23 [Cucurbita pepo subsp. pepo] >XP_023515190.1 60S ribosomal protein L23 [Cucurbita pepo subsp. pepo] >XP_023532400.1 60S ribosomal protein L23 [Cucurbita pepo subsp. pepo] >XP_023547977.1 60S ribosomal protein L23 [Cucurbita pepo subsp. pepo] >XP_023548182.1 60S ribosomal protein L23 [Cucurbita pepo subsp. pepo] >XP_023553687.1 60S ribosomal protein L23 [Cucurbita pepo subsp. pepo] >XP_023879824.1 60S ribosomal protein L23 [Quercus suber] >XP_023887452.1 60S ribosomal protein L23 [Quercus suber] >XP_024195178.1 60S ribosomal protein L23 [Rosa chinensis] >XP_028946715.1 60S ribosomal protein L23 [Malus domestica] >XP_028957412.1 60S ribosomal protein L23 [Malus domestica] >XP_030499120.1 60S ribosomal protein L23 [Cannabis sativa] >XP_030507771.1 60S ribosomal protein L23 [Cannabis sativa] >XP_030933958.1 60S ribosomal protein L23 isoform X1 [Quercus lobata] >XP_030974787.1 60S ribosomal protein L23 [Quercus lobata] >XP_034211471.1 60S ribosomal protein L23 [Prunus dulcis] >XP_034218586.1 60S ribosomal protein L23 [Prunus dulcis] >XP_035548350.1 60S ribosomal protein L23 [Juglans regia] >XP_038876055.1 60S ribosomal protein L23 [Benincasa hispida] >XP_038876056.1 60S ribosomal protein L23 [Benincasa hispida] >XP_038886983.1 60S ribosomal protein L23 [Benincasa hispida] >XP_038906519.1 60S ribosomal protein L23 [Benincasa hispida] >XP_038906730.1 60S ribosomal protein L23 [Benincasa hispida] >XP_041001342.1 60S ribosomal protein L23 [Juglans microcarpa x Juglans regia] >XP_041004696.1 60S ribosomal protein L23 [Juglans microcarpa x Juglans regia] >XP_041024349.1 60S ribosomal protein L23 [Juglans microcarpa x Juglans regia] >XP_042942209.1 60S ribosomal protein L23 [Carya illinoinensis] >XP_042967388.1 60S ribosomal protein L23 [Carya illinoinensis] >XP_042973814.1 60S ribosomal protein L23 [Carya illinoinensis] >XP_042973815.1 60S ribosomal protein L23 [Carya illinoinensis] >AAK25758.1 ribosomal protein L17 [Castanea sativa] >AFK34301.1 unknown [Lotus japonicus] >KAB1212064.1 60S ribosomal protein L23 [Morella rubra] >KAB2599894.1 60S ribosomal protein L23-like [Pyrus ussuriensis x Pyrus communis] >KAE9591015.1 putative ribosomal protein L14P [Lupinus albus] >KAF3436095.1 hypothetical protein FNV43_RR23187 [Rhamnella rubrinervis] >KAF3967416.1 hypothetical protein CMV_008583 [Castanea mollissima] >KAG6571545.1 60S ribosomal protein L23, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013467.1 60S ribosomal protein L23, partial [Cucurbita argyrosperma subsp. argyrosperma] >PNY17244.1 60S ribosomal protein l23-like [Trifolium pratense] >PQQ18962.1 60S ribosomal protein L23 [Prunus yedoensis var. nudiflora] >TQE08390.1 hypothetical protein C1H46_006018 [Malus baccata] >CAB4292424.1 unnamed protein product [Prunus armeniaca] >GAU19371.1 hypothetical protein TSUD_336580 [Trifolium subterraneum])

HSP 1 Score: 283.5 bits (724), Expect = 1.0e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]

BLAST of Lcy01g003650 vs. NCBI nr
Match: KAF4371318.1 (hypothetical protein G4B88_003788 [Cannabis sativa])

HSP 1 Score: 283.5 bits (724), Expect = 1.0e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 647 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 706

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 707 VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 766

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 767 IGKECADLWPRIASAANAIV 786

[Close]

BLAST of Lcy01g003650 vs. NCBI nr
Match: KAF5465863.1 (hypothetical protein F2P56_015830, partial [Juglans regia])

HSP 1 Score: 283.5 bits (724), Expect = 1.0e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 17  MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 76

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 77  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 136

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 137 IGKECADLWPRIASAANAIV 156

[Close]

BLAST of Lcy01g003650 vs. NCBI nr
Match: KAF4351629.1 (hypothetical protein F8388_003282 [Cannabis sativa])

HSP 1 Score: 283.5 bits (724), Expect = 1.0e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 695 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 754

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 755 VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 814

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 815 IGKECADLWPRIASAANAIV 834

[Close]

BLAST of Lcy01g003650 vs. TAIR 10
Match: AT1G04480.1 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 281.2 bits (718), Expect = 4.6e-76
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGG++GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]

BLAST of Lcy01g003650 vs. TAIR 10
Match: AT2G33370.1 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 281.2 bits (718), Expect = 4.6e-76
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGG++GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]

BLAST of Lcy01g003650 vs. TAIR 10
Match: AT3G04400.1 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 281.2 bits (718), Expect = 4.6e-76
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGG++GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 141
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140

[Close]

BLAST of Lcy01g003650 vs. TAIR 10
Match: AT3G04400.2 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 255.0 bits (650), Expect = 3.5e-68
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 16  MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 75
           MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK
Sbjct: 1   MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 60

Query: 76  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 135
           VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA
Sbjct: 61  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 120

Query: 136 ANAIV 141
           ANAIV
Sbjct: 121 ANAIV 125

[Close]

BLAST of Lcy01g003650 vs. TAIR 10
Match: ATCG00780.1 (ribosomal protein L14 )

HSP 1 Score: 68.2 bits (165), Expect = 6.1e-12
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 0


Query: 26  VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVLPAVIV 85
           +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIV
Sbjct: 8   LNVADNSGARELMCIRIIGASNR----RYAHIGDVIVAVIKEAIPNTPLERSEVIRAVIV 67

Query: 86  RQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 141
           R  K  +R +G  + ++DNA V+++ +G  KG+ + G I +E   L + +I S A  ++
Sbjct: 68  RTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122

The following BLAST results are available for this feature:

BLAST of Lcy01g003650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49690	6.5e-75	98.57	60S ribosomal protein L23 OS=Arabidopsis thaliana OX=3702 GN=RPL23A PE=2 SV=3	[more]
Q07760	3.2e-74	97.14	60S ribosomal protein L23 OS=Nicotiana tabacum OX=4097 GN=RPL23 PE=2 SV=1	[more]
Q9XEK8	3.4e-68	90.71	60S ribosomal protein L23 OS=Syntrichia ruralis OX=38588 GN=RPL23 PE=2 SV=1	[more]
Q6PC14	2.0e-63	85.61	60S ribosomal protein L23 OS=Danio rerio OX=7955 GN=rpl23 PE=2 SV=1	[more]
Q3T057	4.4e-63	84.89	60S ribosomal protein L23 OS=Bos taurus OX=9913 GN=RPL23 PE=2 SV=2	[more]

BLAST of Lcy01g003650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HWG1	4.8e-73	100.00	60S ribosomal protein L23 OS=Cucurbita maxima OX=3661 GN=LOC111466895 PE=3 SV=1	[more]
M5WP13	4.8e-73	100.00	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G047000 PE=3 SV=1	[more]
A0A6A5ND05	4.8e-73	100.00	Putative ribosomal protein L14P OS=Lupinus albus OX=3870 GN=Lal_00022109 PE=3 SV...	[more]
A0A5N5FNP6	4.8e-73	100.00	60S ribosomal protein L23-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 ...	[more]
A0A7J6G5C7	4.8e-73	100.00	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_009005 PE=3 SV=1	[more]

BLAST of Lcy01g003650 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF4364815.1	1.0e-72	100.00	hypothetical protein G4B88_025534 [Cannabis sativa]	[more]
XP_004296407.1	1.0e-72	100.00	PREDICTED: 60S ribosomal protein L23 [Fragaria vesca subsp. vesca] >XP_004486225...	[more]
KAF4371318.1	1.0e-72	100.00	hypothetical protein G4B88_003788 [Cannabis sativa]	[more]
KAF5465863.1	1.0e-72	100.00	hypothetical protein F2P56_015830, partial [Juglans regia]	[more]
KAF4351629.1	1.0e-72	100.00	hypothetical protein F8388_003282 [Cannabis sativa]	[more]

BLAST of Lcy01g003650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04480.1	4.6e-76	98.57	Ribosomal protein L14p/L23e family protein	[more]
AT2G33370.1	4.6e-76	98.57	Ribosomal protein L14p/L23e family protein	[more]
AT3G04400.1	4.6e-76	98.57	Ribosomal protein L14p/L23e family protein	[more]
AT3G04400.2	3.5e-68	100.00	Ribosomal protein L14p/L23e family protein	[more]
ATCG00780.1	6.1e-12	33.61	ribosomal protein L14	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000218	Ribosomal protein L14P	SMART	SM01374	Ribosomal_L14_2	coord: 19..140 e-value: 3.2E-60 score: 216.1
IPR000218	Ribosomal protein L14P	PFAM	PF00238	Ribosomal_L14	coord: 22..140 e-value: 6.5E-36 score: 123.0
IPR000218	Ribosomal protein L14P	PANTHER	PTHR11761	50S/60S RIBOSOMAL PROTEIN L14/L23	coord: 1..140
IPR000218	Ribosomal protein L14P	HAMAP	MF_01367	Ribosomal_L14	coord: 19..140 score: 19.384665
IPR036853	Ribosomal protein L14 superfamily	GENE3D	2.40.150.20	Ribosomal protein L14	coord: 1..140 e-value: 5.9E-56 score: 190.0
IPR036853	Ribosomal protein L14 superfamily	SUPERFAMILY	50193	Ribosomal protein L14	coord: 11..140
None	No IPR available	PANTHER	PTHR11761:SF19	60S RIBOSOMAL PROTEIN L23	coord: 1..140
IPR019972	Ribosomal protein L14P, conserved site	PROSITE	PS00049	RIBOSOMAL_L14	coord: 79..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g003650.1	Lcy01g003650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0070180	large ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome