Lcy01g003520 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g003520
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	splicing factor U2af large subunit B-like
Location	Chr01: 4220090 .. 4220794 (-)
RNA-Seq Expression	Lcy01g003520
Synteny	Lcy01g003520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATTTTGTAGGTTTGGGATGGTTAAATCCATGAATGTTGCAAAGCCATGCCGTGGCTGTGTCAGTGCTGAAGAAGACTACAAGAGTGATGTGACTGGTGTGGAGATCAAACATGAGATTCAGGAAAACAGCACATTAGTGATTTCAAAAAATGATAATGACCTTGAAGATAATAAAGCCAACCTTGATAATTGCCCCGATGACACTTCTCAGAAGCAAGGTAATTGCCCTGGCAATGGTAGACACCAAAACGAAGTTGTGGAGGACAAATTGTGTCAAATGGGTAATGATGATGCTATTTGTTTTGAAGACGTGGCTTGTGAGCAGGGGAGCAGCCCAGTAAATGAACTTCATGACAAAGAAGTAGCTGAAATAGCTGAAACTGATGAAACTGGCTCAGATAAGAAGTCAATGCATCTAGATGATTCAACTACAGTGGTGGCTGATAGTGAGAAGAAAGTTCTAAATGGATTGGATCCCATGGTGAGAACAGATTCTGACACATCTAAAAAGAGCGAAAAGAAGGATCCTAATAATAATCTGGATAGTTTATTTGTGTTGGGGAGTGTTTTTGTTGAGTTCGGTAGAATGGAAGCCTCGTATACGGCTGCACACTCTTTACATGGAAGGATTTATGATGGACAAGAGATTAGCATCGAGTACATTCCTCATGATCTCTATCGTAAGAGGTTTCCTAAATGA

mRNA sequence

ATGCAATTTTGTAGGTTTGGGATGGTTAAATCCATGAATGTTGCAAAGCCATGCCGTGGCTGTGTCAGTGCTGAAGAAGACTACAAGAGTGATGTGACTGGTGTGGAGATCAAACATGAGATTCAGGAAAACAGCACATTAGTGATTTCAAAAAATGATAATGACCTTGAAGATAATAAAGCCAACCTTGATAATTGCCCCGATGACACTTCTCAGAAGCAAGGTAATTGCCCTGGCAATGGTAGACACCAAAACGAAGTTGTGGAGGACAAATTGTGTCAAATGGGTAATGATGATGCTATTTGTTTTGAAGACGTGGCTTGTGAGCAGGGGAGCAGCCCAGTAAATGAACTTCATGACAAAGAAGTAGCTGAAATAGCTGAAACTGATGAAACTGGCTCAGATAAGAAGTCAATGCATCTAGATGATTCAACTACAGTGGTGGCTGATAGTGAGAAGAAAGTTCTAAATGGATTGGATCCCATGGTGAGAACAGATTCTGACACATCTAAAAAGAGCGAAAAGAAGGATCCTAATAATAATCTGGATAGTTTATTTGTGTTGGGGAGTGTTTTTGTTGAGTTCGGTAGAATGGAAGCCTCGTATACGGCTGCACACTCTTTACATGGAAGGATTTATGATGGACAAGAGATTAGCATCGAGTACATTCCTCATGATCTCTATCGTAAGAGGTTTCCTAAATGA

Coding sequence (CDS)

ATGCAATTTTGTAGGTTTGGGATGGTTAAATCCATGAATGTTGCAAAGCCATGCCGTGGCTGTGTCAGTGCTGAAGAAGACTACAAGAGTGATGTGACTGGTGTGGAGATCAAACATGAGATTCAGGAAAACAGCACATTAGTGATTTCAAAAAATGATAATGACCTTGAAGATAATAAAGCCAACCTTGATAATTGCCCCGATGACACTTCTCAGAAGCAAGGTAATTGCCCTGGCAATGGTAGACACCAAAACGAAGTTGTGGAGGACAAATTGTGTCAAATGGGTAATGATGATGCTATTTGTTTTGAAGACGTGGCTTGTGAGCAGGGGAGCAGCCCAGTAAATGAACTTCATGACAAAGAAGTAGCTGAAATAGCTGAAACTGATGAAACTGGCTCAGATAAGAAGTCAATGCATCTAGATGATTCAACTACAGTGGTGGCTGATAGTGAGAAGAAAGTTCTAAATGGATTGGATCCCATGGTGAGAACAGATTCTGACACATCTAAAAAGAGCGAAAAGAAGGATCCTAATAATAATCTGGATAGTTTATTTGTGTTGGGGAGTGTTTTTGTTGAGTTCGGTAGAATGGAAGCCTCGTATACGGCTGCACACTCTTTACATGGAAGGATTTATGATGGACAAGAGATTAGCATCGAGTACATTCCTCATGATCTCTATCGTAAGAGGTTTCCTAAATGA

Protein sequence

MQFCRFGMVKSMNVAKPCRGCVSAEEDYKSDVTGVEIKHEIQENSTLVISKNDNDLEDNKANLDNCPDDTSQKQGNCPGNGRHQNEVVEDKLCQMGNDDAICFEDVACEQGSSPVNELHDKEVAEIAETDETGSDKKSMHLDDSTTVVADSEKKVLNGLDPMVRTDSDTSKKSEKKDPNNNLDSLFVLGSVFVEFGRMEASYTAAHSLHGRIYDGQEISIEYIPHDLYRKRFPK

Homology

[Close]

BLAST of Lcy01g003520 vs. ExPASy TrEMBL
Match: A0A1S3CD15 (splicing factor U2af large subunit B isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499435 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 2.5e-82
Identity = 166/244 (68.03%), Postives = 190/244 (77.87%), Query Frame = 0


Query: 5    RFGMVKSMNVAKPCRGCVSAEEDYK--SDVTGVEIKHEIQENSTLVISKNDNDLEDNKAN 64
            RFG VKSMN  KPC G V+ EE++K  SD++ VEIKHEIQENS  VI +N NDLEDN AN
Sbjct: 772  RFGTVKSMNFVKPCNGGVNTEEEHKKISDISDVEIKHEIQENSKTVILRNSNDLEDNNAN 831

Query: 65   LDNCPDDTSQKQGNCPGNGRHQNEVVEDKLCQMGNDDAICFEDVAC------------EQ 124
            LD+CP DT+QKQ NC GNGRHQ+E VEDKLCQMGN DA CFE  AC            EQ
Sbjct: 832  LDSCPSDTNQKQANCSGNGRHQDEAVEDKLCQMGNTDATCFEVAACENASERIRQVLSEQ 891

Query: 125  GSSPVNELHDKEVAEIAETDETGSDKKSMHLDDSTTVVADSEKKVLNGLDPMVRTDSDTS 184
             SSP N+  + +V EI ETDETG DKK + ++ S+ +VAD+EKK LNGLDP+VR  S+  
Sbjct: 892  RSSPENDFQNAKVTEIIETDETGLDKKLVCVEASSMMVADNEKKSLNGLDPVVRIASNAV 951

Query: 185  KKSEKKDPNNNLDSLFVLGSVFVEFGRMEASYTAAHSLHGRIYDGQEISIEYIPHDLYRK 235
            +KSEKKDP+NN +SLFVLGSVFVEFGR+EAS  AAHSLHGRIYDGQEISIEYIPHDLYRK
Sbjct: 952  EKSEKKDPDNNQESLFVLGSVFVEFGRIEASCMAAHSLHGRIYDGQEISIEYIPHDLYRK 1011

[Close]

BLAST of Lcy01g003520 vs. ExPASy TrEMBL
Match: A0A5A7U8K0 (Splicing factor U2af large subunit B isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold772G00410 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 2.5e-82
Identity = 166/244 (68.03%), Postives = 190/244 (77.87%), Query Frame = 0


Query: 5    RFGMVKSMNVAKPCRGCVSAEEDYK--SDVTGVEIKHEIQENSTLVISKNDNDLEDNKAN 64
            RFG VKSMN  KPC G V+ EE++K  SD++ VEIKHEIQENS  VI +N NDLEDN AN
Sbjct: 787  RFGTVKSMNFVKPCNGGVNTEEEHKKISDISDVEIKHEIQENSKTVILRNSNDLEDNNAN 846

Query: 65   LDNCPDDTSQKQGNCPGNGRHQNEVVEDKLCQMGNDDAICFEDVAC------------EQ 124
            LD+CP DT+QKQ NC GNGRHQ+E VEDKLCQMGN DA CFE  AC            EQ
Sbjct: 847  LDSCPSDTNQKQANCSGNGRHQDEAVEDKLCQMGNTDATCFEVAACENASERIRQVLSEQ 906

Query: 125  GSSPVNELHDKEVAEIAETDETGSDKKSMHLDDSTTVVADSEKKVLNGLDPMVRTDSDTS 184
             SSP N+  + +V EI ETDETG DKK + ++ S+ +VAD+EKK LNGLDP+VR  S+  
Sbjct: 907  RSSPENDFQNAKVTEIIETDETGLDKKLVCVEASSMMVADNEKKSLNGLDPVVRIASNAV 966

Query: 185  KKSEKKDPNNNLDSLFVLGSVFVEFGRMEASYTAAHSLHGRIYDGQEISIEYIPHDLYRK 235
            +KSEKKDP+NN +SLFVLGSVFVEFGR+EAS  AAHSLHGRIYDGQEISIEYIPHDLYRK
Sbjct: 967  EKSEKKDPDNNQESLFVLGSVFVEFGRIEASCMAAHSLHGRIYDGQEISIEYIPHDLYRK 1026

[Close]

BLAST of Lcy01g003520 vs. ExPASy TrEMBL
Match: A0A1S3CCY4 (splicing factor U2af large subunit B isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499435 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 2.5e-82
Identity = 166/244 (68.03%), Postives = 190/244 (77.87%), Query Frame = 0


Query: 5    RFGMVKSMNVAKPCRGCVSAEEDYK--SDVTGVEIKHEIQENSTLVISKNDNDLEDNKAN 64
            RFG VKSMN  KPC G V+ EE++K  SD++ VEIKHEIQENS  VI +N NDLEDN AN
Sbjct: 757  RFGTVKSMNFVKPCNGGVNTEEEHKKISDISDVEIKHEIQENSKTVILRNSNDLEDNNAN 816

Query: 65   LDNCPDDTSQKQGNCPGNGRHQNEVVEDKLCQMGNDDAICFEDVAC------------EQ 124
            LD+CP DT+QKQ NC GNGRHQ+E VEDKLCQMGN DA CFE  AC            EQ
Sbjct: 817  LDSCPSDTNQKQANCSGNGRHQDEAVEDKLCQMGNTDATCFEVAACENASERIRQVLSEQ 876

Query: 125  GSSPVNELHDKEVAEIAETDETGSDKKSMHLDDSTTVVADSEKKVLNGLDPMVRTDSDTS 184
             SSP N+  + +V EI ETDETG DKK + ++ S+ +VAD+EKK LNGLDP+VR  S+  
Sbjct: 877  RSSPENDFQNAKVTEIIETDETGLDKKLVCVEASSMMVADNEKKSLNGLDPVVRIASNAV 936

Query: 185  KKSEKKDPNNNLDSLFVLGSVFVEFGRMEASYTAAHSLHGRIYDGQEISIEYIPHDLYRK 235
            +KSEKKDP+NN +SLFVLGSVFVEFGR+EAS  AAHSLHGRIYDGQEISIEYIPHDLYRK
Sbjct: 937  EKSEKKDPDNNQESLFVLGSVFVEFGRIEASCMAAHSLHGRIYDGQEISIEYIPHDLYRK 996

[Close]

BLAST of Lcy01g003520 vs. ExPASy TrEMBL
Match: A0A6J1HJZ8 (splicing factor U2af large subunit A-like OS=Cucurbita moschata OX=3662 GN=LOC111464254 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 4.7e-81
Identity = 169/244 (69.26%), Postives = 190/244 (77.87%), Query Frame = 0


Query: 5   RFGMVKSMNVAKPCRGCVSAEEDYKS--DVTGVEIKHEIQENSTLVISKNDNDLEDNKAN 64
           RFG VKSMNVAK C  CVSAEE+YKS  DVT VEIKHEIQE ST+VIS+ND D +     
Sbjct: 676 RFGTVKSMNVAKSCTSCVSAEEEYKSICDVTDVEIKHEIQEISTIVISRNDTDHD----- 735

Query: 65  LDNCPDDTSQKQGNCPGNGRHQNEVVEDKLCQMGNDDAICFEDV------------ACEQ 124
            DNCPDDT Q+QGN P NGRH+NEVVEDKLC MG  DA CFEDV             C++
Sbjct: 736 -DNCPDDTYQEQGNYPHNGRHKNEVVEDKLCHMGIKDATCFEDVVCKSASETIPRGCCDK 795

Query: 125 GSSPVNELHDKEVAEIAETDETGSDKKSMHLDDSTTVVADSEKKVLNGLDPMVRTDSDTS 184
            SSP NELHD +VA+I    ETGSD+K + L DSTTVVAD EKKVL+G+DPMVRTDSDTS
Sbjct: 796 QSSPGNELHDVKVAKII---ETGSDEKPVLLGDSTTVVADDEKKVLHGMDPMVRTDSDTS 855

Query: 185 KKSEKKDPNNNLDSLFVLGSVFVEFGRMEASYTAAHSLHGRIYDGQEISIEYIPHDLYRK 235
           +K EKK+ NNNL+S F +GSVFVEFGR+EAS  AAHSLHGRIYDGQEIS+EYIPHDLY +
Sbjct: 856 EKREKKERNNNLESSFAVGSVFVEFGRLEASCMAAHSLHGRIYDGQEISVEYIPHDLYHR 910

[Close]

BLAST of Lcy01g003520 vs. ExPASy TrEMBL
Match: A0A0A0LLH4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G172520 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 1.3e-78
Identity = 163/244 (66.80%), Postives = 188/244 (77.05%), Query Frame = 0


Query: 5    RFGMVKSMNVAKPCRGCVSAEEDYK--SDVTGVEIKHEIQENSTLVISKNDNDLEDNKAN 64
            RFG VKS+N  KP   C+SAEE+YK  SD+T V+IKHEIQENST VIS+N NDLEDN AN
Sbjct: 787  RFGTVKSVNFVKP---CISAEEEYKQISDITDVDIKHEIQENSTTVISRNSNDLEDNNAN 846

Query: 65   LDNCPDDTSQKQGNCPGNGRHQNEVVEDKLCQMGNDDAICFEDVAC------------EQ 124
            LDNCP D++QKQ NCP NGRHQ+E VEDKLCQMGN DA CFE   C            EQ
Sbjct: 847  LDNCPSDSNQKQANCPDNGRHQDEAVEDKLCQMGNTDATCFEVADCENASERTGHVLSEQ 906

Query: 125  GSSPVNELHDKEVAEIAETDETGSDKKSMHLDDSTTVVADSEKKVLNGLDPMVRTDSDTS 184
             SSP N+  D +V EI    ETG DKK + ++ S++++AD+EKK LNGLDP+VR  S+  
Sbjct: 907  RSSPENDFQDAKVTEII---ETGLDKKLVCVEASSSMMADNEKKSLNGLDPVVRIASNAV 966

Query: 185  KKSEKKDPNNNLDSLFVLGSVFVEFGRMEASYTAAHSLHGRIYDGQEISIEYIPHDLYRK 235
            +KSEKKDP+NN +SLFVLGSVFVEFGR+EAS  AAHSLHGRIYDGQEISIEYIPH LYRK
Sbjct: 967  EKSEKKDPDNNQESLFVLGSVFVEFGRIEASCMAAHSLHGRIYDGQEISIEYIPHGLYRK 1024

[Close]

BLAST of Lcy01g003520 vs. NCBI nr
Match: XP_008460661.1 (PREDICTED: splicing factor U2af large subunit B isoform X1 [Cucumis melo] >XP_008460662.1 PREDICTED: splicing factor U2af large subunit B isoform X1 [Cucumis melo] >XP_008460664.1 PREDICTED: splicing factor U2af large subunit B isoform X1 [Cucumis melo])

HSP 1 Score: 315.1 bits (806), Expect = 5.2e-82
Identity = 166/244 (68.03%), Postives = 190/244 (77.87%), Query Frame = 0


Query: 5    RFGMVKSMNVAKPCRGCVSAEEDYK--SDVTGVEIKHEIQENSTLVISKNDNDLEDNKAN 64
            RFG VKSMN  KPC G V+ EE++K  SD++ VEIKHEIQENS  VI +N NDLEDN AN
Sbjct: 772  RFGTVKSMNFVKPCNGGVNTEEEHKKISDISDVEIKHEIQENSKTVILRNSNDLEDNNAN 831

Query: 65   LDNCPDDTSQKQGNCPGNGRHQNEVVEDKLCQMGNDDAICFEDVAC------------EQ 124
            LD+CP DT+QKQ NC GNGRHQ+E VEDKLCQMGN DA CFE  AC            EQ
Sbjct: 832  LDSCPSDTNQKQANCSGNGRHQDEAVEDKLCQMGNTDATCFEVAACENASERIRQVLSEQ 891

Query: 125  GSSPVNELHDKEVAEIAETDETGSDKKSMHLDDSTTVVADSEKKVLNGLDPMVRTDSDTS 184
             SSP N+  + +V EI ETDETG DKK + ++ S+ +VAD+EKK LNGLDP+VR  S+  
Sbjct: 892  RSSPENDFQNAKVTEIIETDETGLDKKLVCVEASSMMVADNEKKSLNGLDPVVRIASNAV 951

Query: 185  KKSEKKDPNNNLDSLFVLGSVFVEFGRMEASYTAAHSLHGRIYDGQEISIEYIPHDLYRK 235
            +KSEKKDP+NN +SLFVLGSVFVEFGR+EAS  AAHSLHGRIYDGQEISIEYIPHDLYRK
Sbjct: 952  EKSEKKDPDNNQESLFVLGSVFVEFGRIEASCMAAHSLHGRIYDGQEISIEYIPHDLYRK 1011

[Close]

BLAST of Lcy01g003520 vs. NCBI nr
Match: KAA0050717.1 (splicing factor U2af large subunit B isoform X1 [Cucumis melo var. makuwa] >TYK01450.1 splicing factor U2af large subunit B isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 315.1 bits (806), Expect = 5.2e-82
Identity = 166/244 (68.03%), Postives = 190/244 (77.87%), Query Frame = 0


Query: 5    RFGMVKSMNVAKPCRGCVSAEEDYK--SDVTGVEIKHEIQENSTLVISKNDNDLEDNKAN 64
            RFG VKSMN  KPC G V+ EE++K  SD++ VEIKHEIQENS  VI +N NDLEDN AN
Sbjct: 787  RFGTVKSMNFVKPCNGGVNTEEEHKKISDISDVEIKHEIQENSKTVILRNSNDLEDNNAN 846

Query: 65   LDNCPDDTSQKQGNCPGNGRHQNEVVEDKLCQMGNDDAICFEDVAC------------EQ 124
            LD+CP DT+QKQ NC GNGRHQ+E VEDKLCQMGN DA CFE  AC            EQ
Sbjct: 847  LDSCPSDTNQKQANCSGNGRHQDEAVEDKLCQMGNTDATCFEVAACENASERIRQVLSEQ 906

Query: 125  GSSPVNELHDKEVAEIAETDETGSDKKSMHLDDSTTVVADSEKKVLNGLDPMVRTDSDTS 184
             SSP N+  + +V EI ETDETG DKK + ++ S+ +VAD+EKK LNGLDP+VR  S+  
Sbjct: 907  RSSPENDFQNAKVTEIIETDETGLDKKLVCVEASSMMVADNEKKSLNGLDPVVRIASNAV 966

Query: 185  KKSEKKDPNNNLDSLFVLGSVFVEFGRMEASYTAAHSLHGRIYDGQEISIEYIPHDLYRK 235
            +KSEKKDP+NN +SLFVLGSVFVEFGR+EAS  AAHSLHGRIYDGQEISIEYIPHDLYRK
Sbjct: 967  EKSEKKDPDNNQESLFVLGSVFVEFGRIEASCMAAHSLHGRIYDGQEISIEYIPHDLYRK 1026

[Close]

BLAST of Lcy01g003520 vs. NCBI nr
Match: XP_008460665.1 (PREDICTED: splicing factor U2af large subunit B isoform X2 [Cucumis melo])

HSP 1 Score: 315.1 bits (806), Expect = 5.2e-82
Identity = 166/244 (68.03%), Postives = 190/244 (77.87%), Query Frame = 0


Query: 5    RFGMVKSMNVAKPCRGCVSAEEDYK--SDVTGVEIKHEIQENSTLVISKNDNDLEDNKAN 64
            RFG VKSMN  KPC G V+ EE++K  SD++ VEIKHEIQENS  VI +N NDLEDN AN
Sbjct: 757  RFGTVKSMNFVKPCNGGVNTEEEHKKISDISDVEIKHEIQENSKTVILRNSNDLEDNNAN 816

Query: 65   LDNCPDDTSQKQGNCPGNGRHQNEVVEDKLCQMGNDDAICFEDVAC------------EQ 124
            LD+CP DT+QKQ NC GNGRHQ+E VEDKLCQMGN DA CFE  AC            EQ
Sbjct: 817  LDSCPSDTNQKQANCSGNGRHQDEAVEDKLCQMGNTDATCFEVAACENASERIRQVLSEQ 876

Query: 125  GSSPVNELHDKEVAEIAETDETGSDKKSMHLDDSTTVVADSEKKVLNGLDPMVRTDSDTS 184
             SSP N+  + +V EI ETDETG DKK + ++ S+ +VAD+EKK LNGLDP+VR  S+  
Sbjct: 877  RSSPENDFQNAKVTEIIETDETGLDKKLVCVEASSMMVADNEKKSLNGLDPVVRIASNAV 936

Query: 185  KKSEKKDPNNNLDSLFVLGSVFVEFGRMEASYTAAHSLHGRIYDGQEISIEYIPHDLYRK 235
            +KSEKKDP+NN +SLFVLGSVFVEFGR+EAS  AAHSLHGRIYDGQEISIEYIPHDLYRK
Sbjct: 937  EKSEKKDPDNNQESLFVLGSVFVEFGRIEASCMAAHSLHGRIYDGQEISIEYIPHDLYRK 996

[Close]

BLAST of Lcy01g003520 vs. NCBI nr
Match: XP_038906743.1 (splicing factor U2af large subunit B [Benincasa hispida])

HSP 1 Score: 314.3 bits (804), Expect = 8.8e-82
Identity = 172/244 (70.49%), Postives = 191/244 (78.28%), Query Frame = 0


Query: 5   RFGMVKSMNVAKPCRGCVSAEEDYK--SDVTGVEIKHEIQENSTLVISKNDNDLEDNKAN 64
           RFG VKS+N  KPC GC+SAEE+YK  SDVT VE+KHEIQENST+VIS+N NDLEDN  N
Sbjct: 678 RFGTVKSLNFVKPCNGCISAEEEYKKISDVTDVEVKHEIQENSTMVISRNSNDLEDNNPN 737

Query: 65  LDNCPDDTSQKQGNCPGNGRHQNEVVEDKLCQMGNDDAICFEDVACEQGS---------- 124
           LDNCP+DT+QKQGN     RHQ+E VE K CQMGND+A CFE V CE  S          
Sbjct: 738 LDNCPNDTNQKQGN-----RHQDEGVEGKFCQMGNDNASCFE-VGCENASERIPQEISEQ 797

Query: 125 --SPVNELHDKEVAEIAETDETGSDKKSMHLDDSTTVVADSEKKVLNGLDPMVRTDSDTS 184
             SP  EL + + AEI ETDETGSDKK +  DDS+ VVAD+EKK LNGLDPMVRT S   
Sbjct: 798 RRSPEIELQNAK-AEIIETDETGSDKKLVCPDDSSMVVADNEKKALNGLDPMVRTGSGAF 857

Query: 185 KKSEKKDPNNNLDSLFVLGSVFVEFGRMEASYTAAHSLHGRIYDGQEISIEYIPHDLYRK 235
           +KSEKKDP NN++SLFVLGSVFVEFGRMEA+  AAHSLHGRIYDGQEISIEYIPHDLYRK
Sbjct: 858 EKSEKKDPGNNVESLFVLGSVFVEFGRMEAACMAAHSLHGRIYDGQEISIEYIPHDLYRK 914

[Close]

BLAST of Lcy01g003520 vs. NCBI nr
Match: KAG6593827.1 (Splicing factor U2AF 65 kDa subunit, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 312.0 bits (798), Expect = 4.4e-81
Identity = 168/244 (68.85%), Postives = 191/244 (78.28%), Query Frame = 0


Query: 5   RFGMVKSMNVAKPCRGCVSAEEDYKS--DVTGVEIKHEIQENSTLVISKNDNDLEDNKAN 64
           RFG VKSMNVAKPC  C+SAEE+YKS  DVT VEIKHEIQE ST+VIS+ND D +     
Sbjct: 676 RFGTVKSMNVAKPCTSCISAEEEYKSICDVTDVEIKHEIQEISTIVISRNDTDHD----- 735

Query: 65  LDNCPDDTSQKQGNCPGNGRHQNEVVEDKLCQMGNDDAICFEDVA------------CEQ 124
            DNCPDDT Q++GN P NGRH+NEVVEDKLC MG  DA CFEDV             C++
Sbjct: 736 -DNCPDDTYQEKGNYPHNGRHKNEVVEDKLCHMGIKDATCFEDVVCKSASETIPQGYCDK 795

Query: 125 GSSPVNELHDKEVAEIAETDETGSDKKSMHLDDSTTVVADSEKKVLNGLDPMVRTDSDTS 184
            SSP NELHD +VA+I    ETGSD+K + L DSTTVVAD EKKVL+G+DPMVRTDSDTS
Sbjct: 796 QSSPGNELHDVKVAKII---ETGSDEKPVLLGDSTTVVADDEKKVLHGMDPMVRTDSDTS 855

Query: 185 KKSEKKDPNNNLDSLFVLGSVFVEFGRMEASYTAAHSLHGRIYDGQEISIEYIPHDLYRK 235
           +K EKK+ NNNL+S F +GSVFVEFGR+EAS  AAHSLHGRIYDGQEIS+EYIPHDLY +
Sbjct: 856 EKREKKERNNNLESSFAVGSVFVEFGRLEASCMAAHSLHGRIYDGQEISVEYIPHDLYHR 910

[Close]

BLAST of Lcy01g003520 vs. TAIR 10
Match: AT2G33440.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-11
Identity = 60/234 (25.64%), Postives = 115/234 (49.15%), Query Frame = 0


Query: 1   MQFCRFGMVKSMNVAKPCRGCVSAEEDYKSDVTGVEIKHEIQENSTLVISKNDNDLEDNK 60
           ++  RFG++KS+N+           E    D+T       + E + L+  ++ +  E N 
Sbjct: 121 LECARFGVIKSINIL----------EHKSKDIT-------VSETNPLLNLESTDSKEMNV 180

Query: 61  ANLDNCPDDTSQKQGNCPGNGRHQNEVVEDKLCQMGNDDAICFEDVACEQGSSPVNELHD 120
           + ++   D+ S+K  +   N           L ++   D++  ED  CE  S    E   
Sbjct: 181 SVIEE-KDEGSEKAEDIADN---------VDLAEVVMPDSLTGEDKLCEPCSDTAAETST 240

Query: 121 KEVAEIAETDETGSDKKSMHLDDSTTVVADSEKKVLNGLDPMVRTDS-DTSKKSEKKDPN 180
           +E  ++  T++   +K    +++S    A++ ++V +      R D+ D  ++ +++DP 
Sbjct: 241 QENEDLHSTEQEHCEK---IVEESAQAEAENPQEVASVRTVKTRWDAGDKIEEEQEEDP- 300

Query: 181 NNLDSLFVLGSVFVEFGRMEASYTAAHSLHGRIYDGQEISIEYIPHDLYRKRFP 234
              + +F  G +F+E+ R EA+  AAHSLHGR+YD + +  EY+  +LY+ RFP
Sbjct: 301 ---EDVFETGCIFIEYRRPEATCDAAHSLHGRLYDNRIVKAEYVSKELYQIRFP 320

The following BLAST results are available for this feature:

BLAST of Lcy01g003520 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy01g003520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CD15	2.5e-82	68.03	splicing factor U2af large subunit B isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7U8K0	2.5e-82	68.03	Splicing factor U2af large subunit B isoform X1 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3CCY4	2.5e-82	68.03	splicing factor U2af large subunit B isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1HJZ8	4.7e-81	69.26	splicing factor U2af large subunit A-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A0A0LLH4	1.3e-78	66.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G172520 PE=4 SV=1	[more]

BLAST of Lcy01g003520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460661.1	5.2e-82	68.03	PREDICTED: splicing factor U2af large subunit B isoform X1 [Cucumis melo] >XP_00...	[more]
KAA0050717.1	5.2e-82	68.03	splicing factor U2af large subunit B isoform X1 [Cucumis melo var. makuwa] >TYK0...	[more]
XP_008460665.1	5.2e-82	68.03	PREDICTED: splicing factor U2af large subunit B isoform X2 [Cucumis melo]	[more]
XP_038906743.1	8.8e-82	70.49	splicing factor U2af large subunit B [Benincasa hispida]	[more]
KAG6593827.1	4.4e-81	68.85	Splicing factor U2AF 65 kDa subunit, partial [Cucurbita argyrosperma subsp. soro...	[more]

BLAST of Lcy01g003520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33440.1	1.3e-11	25.64	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 114..234 e-value: 5.3E-9 score: 38.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..179
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..179
None	No IPR available	PANTHER	PTHR23139:SF56	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 4..231
None	No IPR available	PANTHER	PTHR23139	RNA-BINDING PROTEIN	coord: 4..231
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 187..231

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g003520.1	Lcy01g003520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding