Lcy01g003500 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g003500
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr01: 4191792 .. 4192673 (-)
RNA-Seq Expression	Lcy01g003500
Synteny	Lcy01g003500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATATTCTCCACTTTAGATTTAAGGTTTTTTTTTTTAATCATTAAATCTTAAAAAAAAAAACGTCACATACATCAAAGATGTATTAGATATAAAATTGAAAATTCAAAGTCATATTGAACCTGACATTTATTTTTAAAAGTAAGGGACCAGATAACACAAATCTGAAACTTGACGAACTTATTAGACACAAACTCGAAACTTGAATTACTTAACTGTATTTGAGCGGACGAAAAAACTCATCCTCATCGGAAAATTTTCAAAATTAACCCAAATAGATTTTTAAAAACCCAAAAATTTTTGTTAGTTTTGACAATTTCCCATCCTCATCCCATTTCTTTTTTACCTCTGACTTCGTGGTCGAGGGTACATGCCAATTACTGCTAAGCTAATCAACATGGTTAAAATCACCCAATTAAAAACCCTGAAATTAGAGGCTGGTTAAGCTGCATTGCCGGATTCCTCAAAATCAAAACAAACAACACAAGCAAATCCCCAATTTAAAACCCTAAATTCGTCTCCCCAAAATTTCTCCTAATCGAAACCCTCTCTCCGTCTTCTTCCTCCTCCTCTGTAACATGAGTCTGAATTGCCTCTCCTGTCAACTCTTGCAGAGAACACACTCCGACAGAGACCTCGACCAGCGAGATTACTTCTCCCGTCGCTTCGATTCGCCGGAGAGAAGCTGATCCGGCCACCTCTCTTTCCGGCCTCCCAATCCCCCGAACAGAGGAGTCCTGCCGGAGAGCAAGGTCGCTCCCATGGGCCACCACCGTCGCCTTCGGCGGCCCTGGTAATGAGCCGAGGTCGATTAGAAGCTCGGGGATGAGAAGGGATTGGAGCTTTGAGGGTCTCAGCACAAAATCCGAAACGACGACGTAG

mRNA sequence

ATGATATTCTCCACTTTAGATTTAAGAGAACACACTCCGACAGAGACCTCGACCAGCGAGATTACTTCTCCCGTCGCTTCGATTCGCCGGAGAGAAGCTGATCCGGCCACCTCTCTTTCCGGCCTCCCAATCCCCCGAACAGAGGAGTCCTGCCGGAGAGCAAGGTCGCTCCCATGGGCCACCACCGTCGCCTTCGGCGGCCCTGGTAATGAGCCGAGGTCGATTAGAAGCTCGGGGATGAGAAGGGATTGGAGCTTTGAGGGTCTCAGCACAAAATCCGAAACGACGACGTAG

Coding sequence (CDS)

ATGATATTCTCCACTTTAGATTTAAGAGAACACACTCCGACAGAGACCTCGACCAGCGAGATTACTTCTCCCGTCGCTTCGATTCGCCGGAGAGAAGCTGATCCGGCCACCTCTCTTTCCGGCCTCCCAATCCCCCGAACAGAGGAGTCCTGCCGGAGAGCAAGGTCGCTCCCATGGGCCACCACCGTCGCCTTCGGCGGCCCTGGTAATGAGCCGAGGTCGATTAGAAGCTCGGGGATGAGAAGGGATTGGAGCTTTGAGGGTCTCAGCACAAAATCCGAAACGACGACGTAG

Protein sequence

MIFSTLDLREHTPTETSTSEITSPVASIRRREADPATSLSGLPIPRTEESCRRARSLPWATTVAFGGPGNEPRSIRSSGMRRDWSFEGLSTKSETTT

Homology

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BLAST of Lcy01g003500 vs. ExPASy TrEMBL
Match: A0A6J1GL99 (uncharacterized protein LOC111454968 OS=Cucurbita moschata OX=3662 GN=LOC111454968 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 9.6e-04
Identity = 25/35 (71.43%), Postives = 26/35 (74.29%), Query Frame = 0


Query: 55  RSLPWATTVAFGGPGNEPRSIRSSGMRRDWSFEGL 90
           R L     VAFGGPG EPR IRS+GMRRDWSFE L
Sbjct: 69  RRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDL 103

The following BLAST results are available for this feature:

BLAST of Lcy01g003500 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy01g003500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GL99	9.6e-04	71.43	uncharacterized protein LOC111454968 OS=Cucurbita moschata OX=3662 GN=LOC1114549...	[more]

BLAST of Lcy01g003500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of Lcy01g003500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 93..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g003500.1	Lcy01g003500.1	mRNA