Lcy01g003350 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g003350
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	transcription factor MYB15-like
Location	Chr01: 4038486 .. 4039836 (+)
RNA-Seq Expression	Lcy01g003350
Synteny	Lcy01g003350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATCGAATTTTGACCAATTTTATTCAGAGCCATGGCCATAGCAATTGGCGAGCTCTTCCTAAACAAGCTGGTGAGTTATTGAGTTTTATTGAGATTTGAATTCAAAAGTTTTGAAATTTACTTTTTTTTTTCTTGATATTCAATAGAATAACAGAAACCCAGAAAAACCCATGTCTTAAATCTACTGATCTCGTCGAATTTTGAAAAAAGTTTGAATCTTTTTAACCCAATCTTCGAGATTTGCCTTAGTTTTTTTTCTGATCTTTTAATTTCTATGTGTAGGGCTTTTGAGATGTGGGAAGAGTTGCAGACTTCGCTGGACAAATTACTTGAGACCTGATATTAAAAGAGGCAACTTTACCAAAGAAGAAGAAGAAGCCATTATCAACCTACATGAATTGCTTGGCAATAGGTAAATTTTCAAAATTTAACCTAAAGTCAAATGCTCGGTCAACCTGAACATAGCTAGTAATCGTTAAAAAAATAAAAATAAAGGCCAAGCACATGCATATGCTTAAACACTTGATATAAATATTTTTTGGAACATTATGATTGAAAGAATAATTATTGTTTTCAAATGAAATGGGGCCTAACTTTTTTTACTTTTCTTTGTTACTATAGATGGTCAGCAATAGCAGCCAAGCTGCCGGGTCGGACAGACAATGAAATCAAGAATGTTTGGCACACCCACTTGAAGAAAAGGCTCGAAAAACACATCAAAACGACAGCTCCCAAATCTGAAAACAGAAGAAAAAAGCAAACAAAACCAAAAAAATCTTCAGATAATTCTTCATCCATTATTGATGTCACAAATCAAACCCATTTGGCCAATTATTCTTCAATGTCCCCTTCTTCACAACAATCTTCAAGCTGTGAGTTCTCTTCATCCTCGCTCACAGATGCTTACATGACTGAAAATGAGTACTACAGCTACCCGGCCGACGACACGGTGGCTCCGCCATTGATCGATGAGAGCTTTTGGTCCGAGGTAGCTGAGAATTCAAATTCAAATTCCAATTCCAATTCCAACTCCAATTCCAACTCGAGTTCCAACTCGAATTATTATAGTGAAGTGAAAATGGAATTTCCAGTCATGTCTGTGGACATGGTGGAATCAAATGAGGATAAGAGTTATGGTCAACGGGTTGTTGATGATGACATGGAATTTTGGTACGATGTTTTTGTCAGAGCTGGAGGAATTTCAGAATTGCCAGAATTTTGAGATCTTTTCAAATCATCAAAGAGGGTTTTGAATTCCCACGTACATGGAAAATTAAGATTATTGTTCCTGATTTTGAAATCCAACCCAATTTCAGAGAATTCACTCGAGGAGGAAGATTTTGGAGATGGG

mRNA sequence

GATCGAATTTTGACCAATTTTATTCAGAGCCATGGCCATAGCAATTGGCGAGCTCTTCCTAAACAAGCTGGGCTTTTGAGATGTGGGAAGAGTTGCAGACTTCGCTGGACAAATTACTTGAGACCTGATATTAAAAGAGGCAACTTTACCAAAGAAGAAGAAGAAGCCATTATCAACCTACATGAATTGCTTGGCAATAGATGGTCAGCAATAGCAGCCAAGCTGCCGGGTCGGACAGACAATGAAATCAAGAATGTTTGGCACACCCACTTGAAGAAAAGGCTCGAAAAACACATCAAAACGACAGCTCCCAAATCTGAAAACAGAAGAAAAAAGCAAACAAAACCAAAAAAATCTTCAGATAATTCTTCATCCATTATTGATGTCACAAATCAAACCCATTTGGCCAATTATTCTTCAATGTCCCCTTCTTCACAACAATCTTCAAGCTGTGAGTTCTCTTCATCCTCGCTCACAGATGCTTACATGACTGAAAATGAGTACTACAGCTACCCGGCCGACGACACGGTGGCTCCGCCATTGATCGATGAGAGCTTTTGGTCCGAGGTAGCTGAGAATTCAAATTCAAATTCCAATTCCAATTCCAACTCCAATTCCAACTCGAGTTCCAACTCGAATTATTATAGTGAAGTGAAAATGGAATTTCCAGTCATGTCTGTGGACATGGTGGAATCAAATGAGGATAAGAGTTATGGTCAACGGGTTGTTGATGATGACATGGAATTTTGGTACGATGTTTTTGTCAGAGCTGGAGGAATTTCAGAATTGCCAGAATTTTGAGATCTTTTCAAATCATCAAAGAGGGTTTTGAATTCCCACGTACATGGAAAATTAAGATTATTGTTCCTGATTTTGAAATCCAACCCAATTTCAGAGAATTCACTCGAGGAGGAAGATTTTGGAGATGGG

Coding sequence (CDS)

ATGTCCCCTTCTTCACAACAATCTTCAAGCTGTGAGTTCTCTTCATCCTCGCTCACAGATGCTTACATGACTGAAAATGAGTACTACAGCTACCCGGCCGACGACACGGTGGCTCCGCCATTGATCGATGAGAGCTTTTGGTCCGAGGTAGCTGAGAATTCAAATTCAAATTCCAATTCCAATTCCAACTCCAATTCCAACTCGAGTTCCAACTCGAATTATTATAGTGAAGTGAAAATGGAATTTCCAGTCATGTCTGTGGACATGGTGGAATCAAATGAGGATAAGAGTTATGGTCAACGGGTTGTTGATGATGACATGGAATTTTGGTACGATGTTTTTGTCAGAGCTGGAGGAATTTCAGAATTGCCAGAATTTTGA

Protein sequence

MSPSSQQSSSCEFSSSSLTDAYMTENEYYSYPADDTVAPPLIDESFWSEVAENSNSNSNSNSNSNSNSSSNSNYYSEVKMEFPVMSVDMVESNEDKSYGQRVVDDDMEFWYDVFVRAGGISELPEF

Homology

[Close]

BLAST of Lcy01g003350 vs. ExPASy TrEMBL
Match: A0A0A0LI77 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G174660 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 5.4e-31
Identity = 88/128 (68.75%), Postives = 102/128 (79.69%), Query Frame = 0


Query: 1   MSPSSQQSSSCEFSSSSLTDAYMTENEYYSYPADDTVAPPLIDESFWSEVAENSNSNSNS 60
           MSPSSQQSSSCE SSS     Y+TENEYYSY A+D + P  IDESFWSEV +    NS +
Sbjct: 1   MSPSSQQSSSCEISSSLTDHTYITENEYYSYTAEDAMPP--IDESFWSEVVD----NSMT 60

Query: 61  NSNSNSNSSSNSNYYSEVKM-EFPVMSVDMVESNEDKS-YGQRVVDDDMEFWYDVFVRAG 120
           NSNSNS+SSSNSNY SE KM EFP +S+DM+E++ DK  +GQ VVDDDMEFWY+VFV+AG
Sbjct: 61  NSNSNSDSSSNSNYDSEEKMEEFPPVSMDMMETDSDKRLHGQCVVDDDMEFWYNVFVKAG 120

Query: 121 GISELPEF 127
            ISELPEF
Sbjct: 121 EISELPEF 122

[Close]

BLAST of Lcy01g003350 vs. ExPASy TrEMBL
Match: A0A1S3CCG5 (myb-related protein Myb4-like OS=Cucumis melo OX=3656 GN=LOC103499420 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.8e-29
Identity = 83/127 (65.35%), Postives = 96/127 (75.59%), Query Frame = 0


Query: 1   MSPSSQQSSSCEFSSSSLTDAYMTENEYYSYPADDTVAPPLIDESFWSEVAENSNSNSNS 60
           MSPSSQQSSSCE SSS     YMTENEYYSY  +D + P  IDESFWS+V ENS +NSNS
Sbjct: 165 MSPSSQQSSSCEISSSLTDHTYMTENEYYSYTVEDAMPP--IDESFWSDVVENSMTNSNS 224

Query: 61  NSNSNSNSSSNSNYYSEVKMEFPVMSVDMVESNEDKS-YGQRVVDDDMEFWYDVFVRAGG 120
           +S+SNSN  S      E + EFP +S+DM E+N DK  +GQ VVDDDMEFWY+VFV+AG 
Sbjct: 225 DSSSNSNYDS-----EEKREEFPPVSMDMTETNSDKRLHGQCVVDDDMEFWYNVFVKAGE 284

Query: 121 ISELPEF 127
           ISELPEF
Sbjct: 285 ISELPEF 284

[Close]

BLAST of Lcy01g003350 vs. ExPASy TrEMBL
Match: A0A6J1C9P9 (transcription factor MYB13-like OS=Momordica charantia OX=3673 GN=LOC111009610 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 6.6e-29
Identity = 81/132 (61.36%), Postives = 97/132 (73.48%), Query Frame = 0


Query: 1   MSPSSQQSSSCEFSSSSLTDAYMTENEYYSYPADDTV-----APPLIDESFWSEVAENSN 60
           MSPSSQQSSSCE   SS+TD+Y+TENEYYSY A++       A PLIDESFWSEV     
Sbjct: 149 MSPSSQQSSSCEI--SSVTDSYVTENEYYSYEAEEDAVALVEALPLIDESFWSEVV---- 208

Query: 61  SNSNSNSNSNSNSSSNSNYYSEVKMEFPVMSVD-MVESNEDKSYGQRVVDDDMEFWYDVF 120
             +  N N N+ + SNSNYY EV+ EFP+MS+D MVE N+D     + +DDDMEFWYDVF
Sbjct: 209 IENEINENENNENGSNSNYYGEVQTEFPIMSMDHMVELNDDDKSNGQSLDDDMEFWYDVF 268

Query: 121 VRAGGISELPEF 127
           ++AGGISELPEF
Sbjct: 269 IKAGGISELPEF 274

[Close]

BLAST of Lcy01g003350 vs. ExPASy TrEMBL
Match: A0A6J1KWP0 (transcription factor MYB15-like OS=Cucurbita maxima OX=3661 GN=LOC111498915 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22
Identity = 74/125 (59.20%), Postives = 80/125 (64.00%), Query Frame = 0


Query: 2   SPSSQQSSSCEFSSSSLTDAYMTENEYYSYPADDTVAPPLIDESFWSEVAENSNSNSNSN 61
           SPSSQQSSSCE  SSSLTDA M ENEYYSYP + T APP IDESFWSEVAE+S       
Sbjct: 165 SPSSQQSSSCEI-SSSLTDASMAENEYYSYPDEGTEAPPPIDESFWSEVAEDS------- 224

Query: 62  SNSNSNSSSNSNYYSEVKMEFPVMSVDMVESNEDKSYGQRVVDDDMEFWYDVFVRAGGIS 121
             +NSNS                          DKS G+ VVDDDMEFWY+VFV+AGGIS
Sbjct: 225 --TNSNSM-------------------------DKSNGESVVDDDMEFWYNVFVQAGGIS 254

Query: 122 ELPEF 127
           ELPEF
Sbjct: 285 ELPEF 254

[Close]

BLAST of Lcy01g003350 vs. ExPASy TrEMBL
Match: A0A6J1H520 (transcription factor MYB15-like OS=Cucurbita moschata OX=3662 GN=LOC111460214 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22
Identity = 76/129 (58.91%), Postives = 82/129 (63.57%), Query Frame = 0


Query: 2   SPSSQQSSSCEFSSSSLTDAYMTENEYYSYPADDT----VAPPLIDESFWSEVAENSNSN 61
           SPSSQQSSSCE  SSSLTDA M ENEYYSYPA+ T     APP IDESFWSEVAE+S   
Sbjct: 165 SPSSQQSSSCEI-SSSLTDASMAENEYYSYPAEGTEAMPEAPPPIDESFWSEVAEDS--- 224

Query: 62  SNSNSNSNSNSSSNSNYYSEVKMEFPVMSVDMVESNEDKSYGQRVVDDDMEFWYDVFVRA 121
                 +NSNS                          DKSYG+ VVDDDMEFWY+VFV+A
Sbjct: 225 ------TNSNSM-------------------------DKSYGESVVDDDMEFWYNVFVQA 258

Query: 122 GGISELPEF 127
           GGISELPEF
Sbjct: 285 GGISELPEF 258

[Close]

BLAST of Lcy01g003350 vs. NCBI nr
Match: XP_004147145.1 (transcription factor MYB14 [Cucumis sativus] >KAE8651812.1 hypothetical protein Csa_006634 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 1.1e-30
Identity = 88/128 (68.75%), Postives = 102/128 (79.69%), Query Frame = 0


Query: 1   MSPSSQQSSSCEFSSSSLTDAYMTENEYYSYPADDTVAPPLIDESFWSEVAENSNSNSNS 60
           MSPSSQQSSSCE SSS     Y+TENEYYSY A+D + P  IDESFWSEV +    NS +
Sbjct: 165 MSPSSQQSSSCEISSSLTDHTYITENEYYSYTAEDAMPP--IDESFWSEVVD----NSMT 224

Query: 61  NSNSNSNSSSNSNYYSEVKM-EFPVMSVDMVESNEDKS-YGQRVVDDDMEFWYDVFVRAG 120
           NSNSNS+SSSNSNY SE KM EFP +S+DM+E++ DK  +GQ VVDDDMEFWY+VFV+AG
Sbjct: 225 NSNSNSDSSSNSNYDSEEKMEEFPPVSMDMMETDSDKRLHGQCVVDDDMEFWYNVFVKAG 284

Query: 121 GISELPEF 127
            ISELPEF
Sbjct: 285 EISELPEF 286

[Close]

BLAST of Lcy01g003350 vs. NCBI nr
Match: XP_038875538.1 (transcription factor MYB14-like [Benincasa hispida])

HSP 1 Score: 139.4 bits (350), Expect = 2.1e-29
Identity = 89/129 (68.99%), Postives = 99/129 (76.74%), Query Frame = 0


Query: 1   MSPSSQQSSSCEFSSSSLTD-AYMTENEYYSYPADDTVAPPLIDESFWSEVAENSNSNSN 60
           MSPSSQQSSSCE SSSSLTD  Y+TENEYYSY A++    P IDESFWSEV ENS +NSN
Sbjct: 164 MSPSSQQSSSCEISSSSLTDHTYITENEYYSYTAEE----PPIDESFWSEVVENSMTNSN 223

Query: 61  SNSNSNSNSSSNSNYYSEVKM-EFPVMSVDMVESNEDKSY-GQRVVDDDMEFWYDVFVRA 120
           SN        SN NY SE KM EFP++S+DMVE+N DK   GQ VVDDDMEFWY+VFV+A
Sbjct: 224 SN--------SNLNYDSEEKMEEFPLVSMDMVETNSDKRLNGQCVVDDDMEFWYNVFVKA 280

Query: 121 GGISELPEF 127
             ISELPEF
Sbjct: 284 EEISELPEF 280

[Close]

BLAST of Lcy01g003350 vs. NCBI nr
Match: XP_008460645.1 (PREDICTED: myb-related protein Myb4-like [Cucumis melo])

HSP 1 Score: 137.5 bits (345), Expect = 7.9e-29
Identity = 83/127 (65.35%), Postives = 96/127 (75.59%), Query Frame = 0


Query: 1   MSPSSQQSSSCEFSSSSLTDAYMTENEYYSYPADDTVAPPLIDESFWSEVAENSNSNSNS 60
           MSPSSQQSSSCE SSS     YMTENEYYSY  +D + P  IDESFWS+V ENS +NSNS
Sbjct: 165 MSPSSQQSSSCEISSSLTDHTYMTENEYYSYTVEDAMPP--IDESFWSDVVENSMTNSNS 224

Query: 61  NSNSNSNSSSNSNYYSEVKMEFPVMSVDMVESNEDKS-YGQRVVDDDMEFWYDVFVRAGG 120
           +S+SNSN  S      E + EFP +S+DM E+N DK  +GQ VVDDDMEFWY+VFV+AG 
Sbjct: 225 DSSSNSNYDS-----EEKREEFPPVSMDMTETNSDKRLHGQCVVDDDMEFWYNVFVKAGE 284

Query: 121 ISELPEF 127
           ISELPEF
Sbjct: 285 ISELPEF 284

[Close]

BLAST of Lcy01g003350 vs. NCBI nr
Match: XP_022138436.1 (transcription factor MYB13-like [Momordica charantia])

HSP 1 Score: 136.7 bits (343), Expect = 1.4e-28
Identity = 81/132 (61.36%), Postives = 97/132 (73.48%), Query Frame = 0


Query: 1   MSPSSQQSSSCEFSSSSLTDAYMTENEYYSYPADDTV-----APPLIDESFWSEVAENSN 60
           MSPSSQQSSSCE   SS+TD+Y+TENEYYSY A++       A PLIDESFWSEV     
Sbjct: 149 MSPSSQQSSSCEI--SSVTDSYVTENEYYSYEAEEDAVALVEALPLIDESFWSEVV---- 208

Query: 61  SNSNSNSNSNSNSSSNSNYYSEVKMEFPVMSVD-MVESNEDKSYGQRVVDDDMEFWYDVF 120
             +  N N N+ + SNSNYY EV+ EFP+MS+D MVE N+D     + +DDDMEFWYDVF
Sbjct: 209 IENEINENENNENGSNSNYYGEVQTEFPIMSMDHMVELNDDDKSNGQSLDDDMEFWYDVF 268

Query: 121 VRAGGISELPEF 127
           ++AGGISELPEF
Sbjct: 269 IKAGGISELPEF 274

[Close]

BLAST of Lcy01g003350 vs. NCBI nr
Match: XP_022959123.1 (transcription factor MYB15-like [Cucurbita moschata] >KAG7013487.1 Transcription factor MYB15, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115.5 bits (288), Expect = 3.2e-22
Identity = 76/129 (58.91%), Postives = 82/129 (63.57%), Query Frame = 0


Query: 2   SPSSQQSSSCEFSSSSLTDAYMTENEYYSYPADDT----VAPPLIDESFWSEVAENSNSN 61
           SPSSQQSSSCE  SSSLTDA M ENEYYSYPA+ T     APP IDESFWSEVAE+S   
Sbjct: 165 SPSSQQSSSCEI-SSSLTDASMAENEYYSYPAEGTEAMPEAPPPIDESFWSEVAEDS--- 224

Query: 62  SNSNSNSNSNSSSNSNYYSEVKMEFPVMSVDMVESNEDKSYGQRVVDDDMEFWYDVFVRA 121
                 +NSNS                          DKSYG+ VVDDDMEFWY+VFV+A
Sbjct: 225 ------TNSNSM-------------------------DKSYGESVVDDDMEFWYNVFVQA 258

Query: 122 GGISELPEF 127
           GGISELPEF
Sbjct: 285 GGISELPEF 258

The following BLAST results are available for this feature:

BLAST of Lcy01g003350 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy01g003350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI77	5.4e-31	68.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G174660 PE=4 SV=1	[more]
A0A1S3CCG5	3.8e-29	65.35	myb-related protein Myb4-like OS=Cucumis melo OX=3656 GN=LOC103499420 PE=4 SV=1	[more]
A0A6J1C9P9	6.6e-29	61.36	transcription factor MYB13-like OS=Momordica charantia OX=3673 GN=LOC111009610 P...	[more]
A0A6J1KWP0	1.6e-22	59.20	transcription factor MYB15-like OS=Cucurbita maxima OX=3661 GN=LOC111498915 PE=4...	[more]
A0A6J1H520	1.6e-22	58.91	transcription factor MYB15-like OS=Cucurbita moschata OX=3662 GN=LOC111460214 PE...	[more]

BLAST of Lcy01g003350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147145.1	1.1e-30	68.75	transcription factor MYB14 [Cucumis sativus] >KAE8651812.1 hypothetical protein ...	[more]
XP_038875538.1	2.1e-29	68.99	transcription factor MYB14-like [Benincasa hispida]	[more]
XP_008460645.1	7.9e-29	65.35	PREDICTED: myb-related protein Myb4-like [Cucumis melo]	[more]
XP_022138436.1	1.4e-28	61.36	transcription factor MYB13-like [Momordica charantia]	[more]
XP_022959123.1	3.2e-22	58.91	transcription factor MYB15-like [Cucurbita moschata] >KAG7013487.1 Transcription...	[more]

BLAST of Lcy01g003350 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g003350.1	Lcy01g003350.1	mRNA