Lcy01g002020 (gene) Sponge gourd (P93075) v1

Overview
NameLcy01g002020
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr01: 2394849 .. 2396086 (+)
RNA-Seq ExpressionLcy01g002020
SyntenyLcy01g002020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTCTTTTTCCTATTTAAATCTCTAGTTGAAATGAAGCTAACCAAGTAGAGTTGTTTTTTGAGTTCCCTTCTCCTTTTTGGGGTTTGTTCTTGCCTTTCTAAGGCTTTGTTGGGGAGAAGTTGAGATGCAAATGGAAGTAGAAGATGATGATTTGTTGTTTGCTGAGCTTACGAGACGGATTTCGCTTCTCATTATGGACGACGACGAGCTTCCGCTTGTTGATACGGTTCGTTTCGCCTTCTCGATCTTTAGCCATTCACTTCTTTTTATTAGGCTTTGAACTTTTAAACTTAGTGTTTGTTTAATGTTTGATAGGTCTATGTTGTTAATATTGTTTGTTTGTGCTACTAAACACTTTTCGAAGTCTAATGTGATCTGTTGGAGTTTAAAAATCGCGAATAGTGAAACGTGACATTAAAAGTTTAAAGAGAGGTTAGAAATTTTTTGAAGTATTTTGATTGGATAGCTAACATTGCTGAAGTTTAGTTACCTTTTTTTCAAAATACAAGTTTGAGTGTGTAGTGAACTACTCTTCAATTCTATCGGTTTCTCTAATCAAACTCAAATTTGACAATTCATTTCTTAAACATTCATTAGATTGAGAAGTTAAACTCACAACTTAAAGTTCCGACCCCTAAAAAATTTTAGGAAGTGTTTAGTCCAAGGAGTTGTTGTGGGACCTACAAAGACACTCTGTTGTGGGTCTCACAAACTTATTAATTACTACTTTAACTCCTGTGACAAAACAATTCTAGATTTCATAATTTCAACTCTTTAGATTAAACTGAGATCAAATTTGTAACTAAACATATCATTAATGTTTCAGGATTTGACTCGGGCAGTACACCGAGTCCGACCTAGACAGTTGCCATTAATGGTGGATTACGAGCACAACTTTGTAAGGGAGAGCAAAGGCACTGGAGTTTTCATTCCGGCACGGTTGCCGCCGCCGAGGAGGAAGCAGAGGAATGCCGCCGCCGCCGCCTACAGAATCAAGTCGGAAAATAAGAGGCTCAATTCTCAACCATCTTCAACCTATTATTTTAAGCCCAGAAAGGGCTGAGCTTATAATTTTCTTATCCTTTCTAATTATTTCAAGTTTTAGTTCTATATTAACATTTAATTTTTTAATAATTCATGTGTGACAGTGATATGTTAGTTATGTCACTTATGAAATAAAGCTATCTAGAACCTTGATTGTCTATTTTTTTTGGATTAATAAAAAGACTTAGATTT

mRNA sequence

TTTTCTTTTTCCTATTTAAATCTCTAGTTGAAATGAAGCTAACCAAGTAGAGTTGTTTTTTGAGTTCCCTTCTCCTTTTTGGGGTTTGTTCTTGCCTTTCTAAGGCTTTGTTGGGGAGAAGTTGAGATGCAAATGGAAGTAGAAGATGATGATTTGTTGTTTGCTGAGCTTACGAGACGGATTTCGCTTCTCATTATGGACGACGACGAGCTTCCGCTTGTTGATACGGATTTGACTCGGGCAGTACACCGAGTCCGACCTAGACAGTTGCCATTAATGGTGGATTACGAGCACAACTTTGTAAGGGAGAGCAAAGGCACTGGAGTTTTCATTCCGGCACGGTTGCCGCCGCCGAGGAGGAAGCAGAGGAATGCCGCCGCCGCCGCCTACAGAATCAAGTCGGAAAATAAGAGGCTCAATTCTCAACCATCTTCAACCTATTATTTTAAGCCCAGAAAGGGCTGAGCTTATAATTTTCTTATCCTTTCTAATTATTTCAAGTTTTAGTTCTATATTAACATTTAATTTTTTAATAATTCATGTGTGACAGTGATATGTTAGTTATGTCACTTATGAAATAAAGCTATCTAGAACCTTGATTGTCTATTTTTTTTGGATTAATAAAAAGACTTAGATTT

Coding sequence (CDS)

ATGCAAATGGAAGTAGAAGATGATGATTTGTTGTTTGCTGAGCTTACGAGACGGATTTCGCTTCTCATTATGGACGACGACGAGCTTCCGCTTGTTGATACGGATTTGACTCGGGCAGTACACCGAGTCCGACCTAGACAGTTGCCATTAATGGTGGATTACGAGCACAACTTTGTAAGGGAGAGCAAAGGCACTGGAGTTTTCATTCCGGCACGGTTGCCGCCGCCGAGGAGGAAGCAGAGGAATGCCGCCGCCGCCGCCTACAGAATCAAGTCGGAAAATAAGAGGCTCAATTCTCAACCATCTTCAACCTATTATTTTAAGCCCAGAAAGGGCTGA

Protein sequence

MQMEVEDDDLLFAELTRRISLLIMDDDELPLVDTDLTRAVHRVRPRQLPLMVDYEHNFVRESKGTGVFIPARLPPPRRKQRNAAAAAYRIKSENKRLNSQPSSTYYFKPRKG
Homology
BLAST of Lcy01g002020 vs. ExPASy TrEMBL
Match: A0A6J1EQJ8 (uncharacterized protein LOC111436898 OS=Cucurbita moschata OX=3662 GN=LOC111436898 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.9e-40
Identity = 90/111 (81.08%), Postives = 96/111 (86.49%), Query Frame = 0

Query: 1   MQMEVEDDDLLFAELTRRISLLIMDDDELPLVDTDLTRAVHRVRPRQLPLMVDYEHNFVR 60
           M+ EV DDDLLFAELTRRISLLIMDDDELP V TDL+R +HRVRP QLPLMVDYE+ FVR
Sbjct: 1   METEVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGQLPLMVDYENGFVR 60

Query: 61  ESKGTGVFIPARLPPPRRKQRNAAAAAYRIKSENKRLNSQPSSTYYFKPRK 112
           ESKGTGVFIP RLP P+RK RN     YRIKSENKRLNSQPSSTYYFKP+K
Sbjct: 61  ESKGTGVFIPTRLPSPKRKHRN--VVGYRIKSENKRLNSQPSSTYYFKPKK 109

BLAST of Lcy01g002020 vs. ExPASy TrEMBL
Match: A0A6J1KEC6 (uncharacterized protein LOC111494227 OS=Cucurbita maxima OX=3661 GN=LOC111494227 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.1e-38
Identity = 87/111 (78.38%), Postives = 95/111 (85.59%), Query Frame = 0

Query: 1   MQMEVEDDDLLFAELTRRISLLIMDDDELPLVDTDLTRAVHRVRPRQLPLMVDYEHNFVR 60
           M+ EV+DDDLLFAELTRRISLLIMDDDELP V TDL+R +HRVRP QLPLMVDY++ FVR
Sbjct: 24  METEVDDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGQLPLMVDYKNGFVR 83

Query: 61  ESKGTGVFIPARLPPPRRKQRNAAAAAYRIKSENKRLNSQPSSTYYFKPRK 112
           ESKGTGVFIP RLP P+RK RN     YRIKS N RLNSQPSSTYYFKP+K
Sbjct: 84  ESKGTGVFIPTRLPSPKRKHRN--VVGYRIKSGNTRLNSQPSSTYYFKPKK 132

BLAST of Lcy01g002020 vs. ExPASy TrEMBL
Match: A0A0A0KGT1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G153490 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.4e-38
Identity = 85/110 (77.27%), Postives = 96/110 (87.27%), Query Frame = 0

Query: 1   MQMEVEDDDLLFAELTRRISLLIMDDDELPLVDTDLTRAVHRVRPRQLPLMVDYEHNFVR 60
           M+MEVE DDLLFAELTRRISLLIMDDDELP+  T+ TR VH++RPR+LPLM+DYE+ FVR
Sbjct: 1   MEMEVESDDLLFAELTRRISLLIMDDDELPIAHTNFTRTVHQLRPRELPLMMDYENGFVR 60

Query: 61  ESKGTGVFIPARLPPPRRKQRNAAAAAYRIKSENKRLNSQPSSTYYFKPR 111
           ESKGTGVFIPARLPP +RKQ+N   A YRIKSENKRLN QPS TYY KP+
Sbjct: 61  ESKGTGVFIPARLPPRKRKQKN-VTAGYRIKSENKRLNGQPSPTYYCKPK 109

BLAST of Lcy01g002020 vs. ExPASy TrEMBL
Match: A0A5A7SW60 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G00710 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.2e-36
Identity = 83/110 (75.45%), Postives = 96/110 (87.27%), Query Frame = 0

Query: 3   MEVEDDDLLFAELTRRISLLIMDDDELPLVDTDLTRAVHRVRPRQLPLMVDYEHNFVRES 62
           MEVE+DDLLFAELTRRISLLIMDDDELP+V+T+ TR VH++RPR+LPL +DYE+ FVRES
Sbjct: 1   MEVENDDLLFAELTRRISLLIMDDDELPIVNTNFTRTVHQLRPRELPLTMDYENGFVRES 60

Query: 63  KGTGVFIPARLPPPRRKQRNAAAAAYRIKSENKRLNS--QPSSTYYFKPR 111
           KGTGVFIP RLPPP+RKQ+N A   YRIKSENKRLN+  QPS  YY KP+
Sbjct: 61  KGTGVFIPTRLPPPKRKQKN-ATVGYRIKSENKRLNNNRQPSPMYYCKPK 109

BLAST of Lcy01g002020 vs. ExPASy TrEMBL
Match: A0A1S3C8R0 (uncharacterized protein LOC103497931 OS=Cucumis melo OX=3656 GN=LOC103497931 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.2e-36
Identity = 83/110 (75.45%), Postives = 96/110 (87.27%), Query Frame = 0

Query: 3   MEVEDDDLLFAELTRRISLLIMDDDELPLVDTDLTRAVHRVRPRQLPLMVDYEHNFVRES 62
           MEVE+DDLLFAELTRRISLLIMDDDELP+V+T+ TR VH++RPR+LPL +DYE+ FVRES
Sbjct: 1   MEVENDDLLFAELTRRISLLIMDDDELPIVNTNFTRTVHQLRPRELPLTMDYENGFVRES 60

Query: 63  KGTGVFIPARLPPPRRKQRNAAAAAYRIKSENKRLNS--QPSSTYYFKPR 111
           KGTGVFIP RLPPP+RKQ+N A   YRIKSENKRLN+  QPS  YY KP+
Sbjct: 61  KGTGVFIPTRLPPPKRKQKN-ATVGYRIKSENKRLNNNRQPSPMYYCKPK 109

BLAST of Lcy01g002020 vs. NCBI nr
Match: XP_022930457.1 (uncharacterized protein LOC111436898 [Cucurbita moschata])

HSP 1 Score: 174.9 bits (442), Expect = 4.0e-40
Identity = 90/111 (81.08%), Postives = 96/111 (86.49%), Query Frame = 0

Query: 1   MQMEVEDDDLLFAELTRRISLLIMDDDELPLVDTDLTRAVHRVRPRQLPLMVDYEHNFVR 60
           M+ EV DDDLLFAELTRRISLLIMDDDELP V TDL+R +HRVRP QLPLMVDYE+ FVR
Sbjct: 1   METEVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGQLPLMVDYENGFVR 60

Query: 61  ESKGTGVFIPARLPPPRRKQRNAAAAAYRIKSENKRLNSQPSSTYYFKPRK 112
           ESKGTGVFIP RLP P+RK RN     YRIKSENKRLNSQPSSTYYFKP+K
Sbjct: 61  ESKGTGVFIPTRLPSPKRKHRN--VVGYRIKSENKRLNSQPSSTYYFKPKK 109

BLAST of Lcy01g002020 vs. NCBI nr
Match: XP_023521928.1 (uncharacterized protein LOC111785772 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.1 bits (440), Expect = 6.8e-40
Identity = 89/111 (80.18%), Postives = 96/111 (86.49%), Query Frame = 0

Query: 1   MQMEVEDDDLLFAELTRRISLLIMDDDELPLVDTDLTRAVHRVRPRQLPLMVDYEHNFVR 60
           M+ EV+DDDLLFAELTRRISLLIMDDDE P V TDL+R +HRVRP QLPLMVDYE+ FVR
Sbjct: 1   METEVDDDDLLFAELTRRISLLIMDDDEFPSVHTDLSRTIHRVRPGQLPLMVDYENGFVR 60

Query: 61  ESKGTGVFIPARLPPPRRKQRNAAAAAYRIKSENKRLNSQPSSTYYFKPRK 112
           ESKGTGVFIP RLP P+RK RN     YRIKSENKRLNSQPSSTYYFKP+K
Sbjct: 61  ESKGTGVFIPTRLPSPKRKHRN--VVGYRIKSENKRLNSQPSSTYYFKPKK 109

BLAST of Lcy01g002020 vs. NCBI nr
Match: KAG6593910.1 (hypothetical protein SDJN03_13386, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 173.3 bits (438), Expect = 1.2e-39
Identity = 89/111 (80.18%), Postives = 96/111 (86.49%), Query Frame = 0

Query: 1   MQMEVEDDDLLFAELTRRISLLIMDDDELPLVDTDLTRAVHRVRPRQLPLMVDYEHNFVR 60
           M+ EV DDDLLFAELTRRISLLIMDDDELP V TDL+R +HRVRP +LPLMVDYE+ FVR
Sbjct: 1   METEVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGKLPLMVDYENGFVR 60

Query: 61  ESKGTGVFIPARLPPPRRKQRNAAAAAYRIKSENKRLNSQPSSTYYFKPRK 112
           ESKGTGVFIP RLP P+RK RN     YRIKSENKRLNSQPSSTYYFKP+K
Sbjct: 61  ESKGTGVFIPTRLPSPKRKHRN--VVGYRIKSENKRLNSQPSSTYYFKPKK 109

BLAST of Lcy01g002020 vs. NCBI nr
Match: XP_023515111.1 (uncharacterized protein LOC111779237 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.6 bits (436), Expect = 2.0e-39
Identity = 88/111 (79.28%), Postives = 95/111 (85.59%), Query Frame = 0

Query: 1   MQMEVEDDDLLFAELTRRISLLIMDDDELPLVDTDLTRAVHRVRPRQLPLMVDYEHNFVR 60
           M+ EV+DDDLLFAELTRRISLLIMDDDE P V TDL+R +HRVRP QLPLMVDYE+ F R
Sbjct: 1   METEVDDDDLLFAELTRRISLLIMDDDEFPSVHTDLSRTIHRVRPGQLPLMVDYENGFAR 60

Query: 61  ESKGTGVFIPARLPPPRRKQRNAAAAAYRIKSENKRLNSQPSSTYYFKPRK 112
           ESKGTGVFIP RLP P+RK RN     YRIKSENKRLNSQPSSTYYFKP+K
Sbjct: 61  ESKGTGVFIPTRLPSPKRKHRN--VVGYRIKSENKRLNSQPSSTYYFKPKK 109

BLAST of Lcy01g002020 vs. NCBI nr
Match: KAG7026252.1 (Peroxiredoxin-2F, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 170.6 bits (431), Expect = 7.5e-39
Identity = 88/111 (79.28%), Postives = 95/111 (85.59%), Query Frame = 0

Query: 1   MQMEVEDDDLLFAELTRRISLLIMDDDELPLVDTDLTRAVHRVRPRQLPLMVDYEHNFVR 60
           M+ EV DDDLLFAELTRRISLLIMDDDELP V TDL+R +HRVRP +LPLMVDYE+ FVR
Sbjct: 1   METEVNDDDLLFAELTRRISLLIMDDDELPSVHTDLSRTIHRVRPGKLPLMVDYENGFVR 60

Query: 61  ESKGTGVFIPARLPPPRRKQRNAAAAAYRIKSENKRLNSQPSSTYYFKPRK 112
           ESKGTGVFIP RLP P+RK  N     YRIKSENKRLNSQPSSTYYFKP+K
Sbjct: 61  ESKGTGVFIPTRLPSPKRKHGN--VVGYRIKSENKRLNSQPSSTYYFKPKK 109

BLAST of Lcy01g002020 vs. TAIR 10
Match: AT3G06070.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19190.1); Has 33 Blast hits to 33 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 8.1e-07
Identity = 37/91 (40.66%), Postives = 56/91 (61.54%), Query Frame = 0

Query: 1  MQMEVE-DDDLLFAELTRRISLLIMDDDE---LPLVDTDLTRAVHR--VRPRQLPLMVDY 60
          M ME+E DDD+ FA+++++++LLI D+DE   + L  +   + + R   +    P M+  
Sbjct: 1  MAMELELDDDVFFADISKQLNLLITDEDEQNPISLSSSVSFQGLFRGNYQTSATPYMMYN 60

Query: 61 E---HNFVRESKGTGVFIPARLPPPRRKQRN 83
          E   +N +RESKGTGVFIP R   PRRK  +
Sbjct: 61 EQINYNVIRESKGTGVFIP-RSSQPRRKHNH 90

BLAST of Lcy01g002020 vs. TAIR 10
Match: AT5G19190.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 5.2e-06
Identity = 37/96 (38.54%), Postives = 52/96 (54.17%), Query Frame = 0

Query: 1  MQMEVE-DDDLLFAELTRRISLLIMDDDE------LPLVDTDLT-RAVHRVRPRQLPLMV 60
          M ME+E DDD+ FA+++++ISLLIMD+DE      L    + L+ + + R   +  P M 
Sbjct: 1  MAMELELDDDVFFADISKQISLLIMDEDEHLNPVSLSSSSSSLSFQGLFRGGYQTAPYMY 60

Query: 61 DYEHNFVRESKGTGVFIPARLPPPRRKQRNAAAAAY 89
            E     +SKGTGVFIP    P RR   +     Y
Sbjct: 61 QQE-----QSKGTGVFIPKSSQPRRRPHHHQKQGRY 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EQJ81.9e-4081.08uncharacterized protein LOC111436898 OS=Cucurbita moschata OX=3662 GN=LOC1114368... [more]
A0A6J1KEC61.1e-3878.38uncharacterized protein LOC111494227 OS=Cucurbita maxima OX=3661 GN=LOC111494227... [more]
A0A0A0KGT11.4e-3877.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G153490 PE=4 SV=1[more]
A0A5A7SW602.2e-3675.45Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3C8R02.2e-3675.45uncharacterized protein LOC103497931 OS=Cucumis melo OX=3656 GN=LOC103497931 PE=... [more]
Match NameE-valueIdentityDescription
XP_022930457.14.0e-4081.08uncharacterized protein LOC111436898 [Cucurbita moschata][more]
XP_023521928.16.8e-4080.18uncharacterized protein LOC111785772 [Cucurbita pepo subsp. pepo][more]
KAG6593910.11.2e-3980.18hypothetical protein SDJN03_13386, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023515111.12.0e-3979.28uncharacterized protein LOC111779237 [Cucurbita pepo subsp. pepo][more]
KAG7026252.17.5e-3979.28Peroxiredoxin-2F, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
AT3G06070.18.1e-0740.66unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G19190.15.2e-0638.54unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..112
NoneNo IPR availablePANTHERPTHR34956:SF2OS05G0397300 PROTEINcoord: 1..100
NoneNo IPR availablePANTHERPTHR34956OS05G0397300 PROTEINcoord: 1..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy01g002020.1Lcy01g002020.1mRNA