Lcy01g001610 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy01g001610
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Peroxidase
Location	Chr01: 1881543 .. 1882341 (+)
RNA-Seq Expression	Lcy01g001610
Synteny	Lcy01g001610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAACCATTATTTTTTTTCCCCATATATTACTTCTCAAAACAAGTCCACCAAAATTGATCTGGTTTATTTATAATAATAATAATTATCATTTATGGACCAGATCAAAGATGCTTCTTCTTTCTTTCTTTGGGAAGACAGTGCAGATTCTGAGGTGGATAGATTATTATCTCTTCCTCATGAATTAGAATCTGCTGTGGATGATCAGGAGGATGCTCGCTCCACCAGCTGCGATGATTATTCTAGTGACCTAAGAGCCCTTGATTTCCAAGATGATGGGGATCATGACGTTGGAGATCAAGCCGTCGATTTGATCGGCGATGGTCGGTCCGACCAGGTCGATGGAAGGCGGCGGAGTGGGGCGGCGTTGGAGTACAATTTCGACGAGGAGGAGGAGGAAGAAGAGTCGAGTAATAATGTCGGTGTGATTCGGAATATGAATGAAATGGAAGATAGGGTCTTTTGGGACACTTGCATGGCGGGAGGGTATCCATGAATCTCGTCTATCGTTGTTTACAAGGTTTAAATCTCATTTTAGTTACGAACGATTAGGATTATCCAAAATTTTTATTTTGATCTCGAAAGAGAGTTTATTATATTCTATTTTGTTTATAAGCTTTTTAAATGTCTATTTTAGTTTTTGAATATAGACAAGAAAAAGTAACAATTTTGAATCTTGTTATTATTTTGTTGTTTATTAGTTAGTTGATAGAATCATGGAGCCAACAAGAGTATAGCTCAACTGGCATAAAGTTGTACTAATAACCACGAGGTCTGTGGTTCAAATCTCCCTATCCCA

mRNA sequence

AAAAAACCATTATTTTTTTTCCCCATATATTACTTCTCAAAACAAGTCCACCAAAATTGATCTGGTTTATTTATAATAATAATAATTATCATTTATGGACCAGATCAAAGATGCTTCTTCTTTCTTTCTTTGGGAAGACAGTGCAGATTCTGAGGTGGATAGATTATTATCTCTTCCTCATGAATTAGAATCTGCTGTGGATGATCAGGAGGATGCTCGCTCCACCAGCTGCGATGATTATTCTAGTGACCTAAGAGCCCTTGATTTCCAAGATGATGGGGATCATGACGTTGGAGATCAAGCCGTCGATTTGATCGGCGATGGTCGGTCCGACCAGGTCGATGGAAGGCGGCGGAGTGGGGCGGCGTTGGAGTACAATTTCGACGAGGAGGAGGAGGAAGAAGAGTCGAGTAATAATGTCGGTGTGATTCGGAATATGAATGAAATGGAAGATAGGGTCTTTTGGGACACTTGCATGGCGGGAGGGTATCCATGAATCTCGTCTATCGTTGTTTACAAGGTTTAAATCTCATTTTAGTTACGAACGATTAGGATTATCCAAAATTTTTATTTTGATCTCGAAAGAGAGTTTATTATATTCTATTTTGTTTATAAGCTTTTTAAATGTCTATTTTAGTTTTTGAATATAGACAAGAAAAAGTAACAATTTTGAATCTTGTTATTATTTTGTTGTTTATTAGTTAGTTGATAGAATCATGGAGCCAACAAGAGTATAGCTCAACTGGCATAAAGTTGTACTAATAACCACGAGGTCTGTGGTTCAAATCTCCCTATCCCA

Coding sequence (CDS)

ATGGACCAGATCAAAGATGCTTCTTCTTTCTTTCTTTGGGAAGACAGTGCAGATTCTGAGGTGGATAGATTATTATCTCTTCCTCATGAATTAGAATCTGCTGTGGATGATCAGGAGGATGCTCGCTCCACCAGCTGCGATGATTATTCTAGTGACCTAAGAGCCCTTGATTTCCAAGATGATGGGGATCATGACGTTGGAGATCAAGCCGTCGATTTGATCGGCGATGGTCGGTCCGACCAGGTCGATGGAAGGCGGCGGAGTGGGGCGGCGTTGGAGTACAATTTCGACGAGGAGGAGGAGGAAGAAGAGTCGAGTAATAATGTCGGTGTGATTCGGAATATGAATGAAATGGAAGATAGGGTCTTTTGGGACACTTGCATGGCGGGAGGGTATCCATGA

Protein sequence

MDQIKDASSFFLWEDSADSEVDRLLSLPHELESAVDDQEDARSTSCDDYSSDLRALDFQDDGDHDVGDQAVDLIGDGRSDQVDGRRRSGAALEYNFDEEEEEEESSNNVGVIRNMNEMEDRVFWDTCMAGGYP

Homology

[Close]

BLAST of Lcy01g001610 vs. ExPASy TrEMBL
Match: A0A5A7SSL9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G001140 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 6.0e-41
Identity = 106/143 (74.13%), Postives = 119/143 (83.22%), Query Frame = 0


Query: 1   MDQIKDASSFFLWEDSADSEVDRLLSLPHELESAV--DDQEDARSTSC--DDYS-SDLRA 60
           MDQIKDASSFFLWEDSADSEVD+LLS PHELESAV  DDQEDA S SC  +D+S  DLRA
Sbjct: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPHELESAVDDDDQEDACSCSCNNNDFSIDDLRA 60

Query: 61  LDFQDDGDH---DVGDQAVDLIGDGRSDQVDGRRRSGAALEYNF--DEEEEEEESSNNVG 120
           LDFQDDGD+   D+ DQ + LIGDG      GRRRSGAAL+Y +  +EEEEEEESS++VG
Sbjct: 61  LDFQDDGDNGDRDL-DQDICLIGDG------GRRRSGAALKYGYEEEEEEEEEESSDDVG 120

Query: 121 VIRNMNEMEDRVFWDTCMAGGYP 134
           VIRNMNEMED++FWDTCMAGGYP
Sbjct: 121 VIRNMNEMEDKLFWDTCMAGGYP 136

[Close]

BLAST of Lcy01g001610 vs. ExPASy TrEMBL
Match: A0A0A0KBF3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067420 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.0e-35
Identity = 99/140 (70.71%), Postives = 108/140 (77.14%), Query Frame = 0


Query: 1   MDQIKDASSFFLWEDSADSEVDRLLS-LPHELESAV---DDQEDARSTSCDDYSSDLRAL 60
           MDQIKDASSFFLWEDSADSEVD+LLS  PH+LESAV   DDQEDA S SC+  ++D    
Sbjct: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCN--NNDFSID 60

Query: 61  DFQD--DGDHDVGDQAVDLIGDGRSDQVDGRRRSGAALEYNFDEEEEEEESSNN-VGVIR 120
           DFQD  DGD+  GDQ + LIGDG      GRRRSGA   Y  +EEEEEEESSNN VG IR
Sbjct: 61  DFQDAYDGDNGDGDQDIGLIGDG------GRRRSGAG--YEEEEEEEEEESSNNDVGAIR 120

Query: 121 NMNEMEDRVFWDTCMAGGYP 134
           NMNEMED+VFWDTCMAGGYP
Sbjct: 121 NMNEMEDKVFWDTCMAGGYP 130

[Close]

BLAST of Lcy01g001610 vs. ExPASy TrEMBL
Match: A0A067G8N3 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g032474mg PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 5.5e-10
Identity = 55/139 (39.57%), Postives = 76/139 (54.68%), Query Frame = 0


Query: 6   DASSFFLWEDSADSEVDRLL--SLPHELESAVDDQEDARSTSCDDYSSDLRALDFQDDGD 65
           D SSF L E+SADSEVD L       +   A  D++DA S SCD        LD+    D
Sbjct: 8   DVSSFVLVEESADSEVDSLTCEMCLRDAVMATGDEDDAESCSCDTIEMQAEGLDY----D 67

Query: 66  HDVGDQAVDLIGDGRSDQVDGRRR----SGAALEYNFDEEEEEEESSNNVGVIRNM---- 125
           H++ ++  D  GDG S   D  R+    S   + +    ++EEE SS ++G+  N+    
Sbjct: 68  HELKNEEFDDDGDGSS--TDQHRQINWSSSCKIWWADGADDEEEYSSWDIGINNNISRKV 127

Query: 126 -NEMEDRVFWDTCMAGGYP 134
            +EMEDR+FW+TCMA GYP
Sbjct: 128 KDEMEDRLFWETCMAFGYP 140

[Close]

BLAST of Lcy01g001610 vs. ExPASy TrEMBL
Match: A0A2H5N748 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_020050 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.7e-09
Identity = 53/137 (38.69%), Postives = 75/137 (54.74%), Query Frame = 0


Query: 6   DASSFFLWEDSADSEVDRLL--SLPHELESAVDDQEDARSTSCDDYSSDLRALDFQDDGD 65
           D SSF L E+SADSEVD L       +   A  D++DA S SCD        LD+    D
Sbjct: 8   DVSSFVLVEESADSEVDSLTCEMCLRDAVMATGDEDDAESCSCDTIEMQAEGLDY----D 67

Query: 66  HDVGDQAVDLIGDGRSDQVDGRRRSGAALEYNFDE--EEEEEESSNNVGVIRNM-----N 125
           HD  ++  +  GDG S     +   G + +  + +  ++EEE SS ++G+  N+     +
Sbjct: 68  HDHKNEESNDDGDGSSTDQHRQINWGGSCKIWWADAADDEEEYSSWDIGINNNISRKVKD 127

Query: 126 EMEDRVFWDTCMAGGYP 134
           EMEDR+FW+TCMA GYP
Sbjct: 128 EMEDRLFWETCMAFGYP 140

[Close]

BLAST of Lcy01g001610 vs. ExPASy TrEMBL
Match: A0A2C9UD61 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G018300 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.2e-06
Identity = 52/139 (37.41%), Postives = 70/139 (50.36%), Query Frame = 0


Query: 4   IKDASSFFLWEDSADSEVD-RLLSLPHELESAVD-DQEDARSTSCDDYSSDLRALDFQDD 63
           + D SSF L E SADSE D  LL L  ++  A D D EDA S SCD   S L   D+   
Sbjct: 15  VVDVSSFLLVEGSADSEADCGLLKLCEDVIMACDYDDEDAESCSCDTVDS-LEVFDYDGT 74

Query: 64  GDHDVGDQAVDLIGDGRSDQVDGRRRSG-------AALEYNFDEEEEEEESSNNVGVIRN 123
           G    GDQ      + ++++     R+        A LEY   E  EEE  ++       
Sbjct: 75  G----GDQDCSGYDEAKANKECAEERNWCRLWLGVAGLEYMSTENGEEESKADAKWSKEV 134

Query: 124 MNEMEDRVFWDTCMAGGYP 134
           +++MED +FW+TC+A GYP
Sbjct: 135 IDQMEDSLFWETCLAVGYP 148

[Close]

BLAST of Lcy01g001610 vs. NCBI nr
Match: KAA0033453.1 (hypothetical protein E6C27_scaffold111G001140 [Cucumis melo var. makuwa])

HSP 1 Score: 176.8 bits (447), Expect = 1.2e-40
Identity = 106/143 (74.13%), Postives = 119/143 (83.22%), Query Frame = 0


Query: 1   MDQIKDASSFFLWEDSADSEVDRLLSLPHELESAV--DDQEDARSTSC--DDYS-SDLRA 60
           MDQIKDASSFFLWEDSADSEVD+LLS PHELESAV  DDQEDA S SC  +D+S  DLRA
Sbjct: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPHELESAVDDDDQEDACSCSCNNNDFSIDDLRA 60

Query: 61  LDFQDDGDH---DVGDQAVDLIGDGRSDQVDGRRRSGAALEYNF--DEEEEEEESSNNVG 120
           LDFQDDGD+   D+ DQ + LIGDG      GRRRSGAAL+Y +  +EEEEEEESS++VG
Sbjct: 61  LDFQDDGDNGDRDL-DQDICLIGDG------GRRRSGAALKYGYEEEEEEEEEESSDDVG 120

Query: 121 VIRNMNEMEDRVFWDTCMAGGYP 134
           VIRNMNEMED++FWDTCMAGGYP
Sbjct: 121 VIRNMNEMEDKLFWDTCMAGGYP 136

[Close]

BLAST of Lcy01g001610 vs. NCBI nr
Match: KAG6575041.1 (hypothetical protein SDJN03_25680, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 165.6 bits (418), Expect = 2.9e-37
Identity = 91/132 (68.94%), Postives = 106/132 (80.30%), Query Frame = 0


Query: 4   IKDASSFFLWEDSADSEVDRLLSLPHELESAVDDQEDARSTSCDDYSSDLRALDFQDDGD 63
           + +ASS FLWED+ADSEVDRLLS PH+LESAVDD EDARS SCDDY++D  A+D QDDGD
Sbjct: 1   MNNASSLFLWEDTADSEVDRLLSHPHQLESAVDDPEDARSCSCDDYATDRSAVDLQDDGD 60

Query: 64  HDVGDQAVDLIG-DGRSDQVDGRRRSGAALEYNFDE-EEEEEESSNNVGVIRNMNEMEDR 123
            D  D+AV   G D RS  +D  R SGA LEY+ +E EEEEEES+NNVG IR+MNEMED+
Sbjct: 61  GD-EDRAVGSTGDDARSSHLDETRPSGATLEYSSEEDEEEEEESNNNVGAIRDMNEMEDK 120

Query: 124 VFWDTCMAGGYP 134
           +FWDTCM GGYP
Sbjct: 121 LFWDTCMEGGYP 131

[Close]

BLAST of Lcy01g001610 vs. NCBI nr
Match: KAE8646684.1 (hypothetical protein Csa_005604 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 3.9e-26
Identity = 84/125 (67.20%), Postives = 93/125 (74.40%), Query Frame = 0


Query: 16  SADSEVDRLLS-LPHELESAV---DDQEDARSTSCDDYSSDLRALDFQD--DGDHDVGDQ 75
           SADSEVD+LLS  PH+LESAV   DDQEDA S SC+  ++D    DFQD  DGD+  GDQ
Sbjct: 31  SADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCN--NNDFSIDDFQDAYDGDNGDGDQ 90

Query: 76  AVDLIGDGRSDQVDGRRRSGAALEYNFDEEEEEEESSNN-VGVIRNMNEMEDRVFWDTCM 134
            + LIGDG      GRRRSGA   Y  +EEEEEEESSNN VG IRNMNEMED+VFWDTCM
Sbjct: 91  DIGLIGDG------GRRRSGAG--YEEEEEEEEEESSNNDVGAIRNMNEMEDKVFWDTCM 145

[Close]

BLAST of Lcy01g001610 vs. NCBI nr
Match: KDO74975.1 (hypothetical protein CISIN_1g032474mg [Citrus sinensis])

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-09
Identity = 55/139 (39.57%), Postives = 76/139 (54.68%), Query Frame = 0


Query: 6   DASSFFLWEDSADSEVDRLL--SLPHELESAVDDQEDARSTSCDDYSSDLRALDFQDDGD 65
           D SSF L E+SADSEVD L       +   A  D++DA S SCD        LD+    D
Sbjct: 8   DVSSFVLVEESADSEVDSLTCEMCLRDAVMATGDEDDAESCSCDTIEMQAEGLDY----D 67

Query: 66  HDVGDQAVDLIGDGRSDQVDGRRR----SGAALEYNFDEEEEEEESSNNVGVIRNM---- 125
           H++ ++  D  GDG S   D  R+    S   + +    ++EEE SS ++G+  N+    
Sbjct: 68  HELKNEEFDDDGDGSS--TDQHRQINWSSSCKIWWADGADDEEEYSSWDIGINNNISRKV 127

Query: 126 -NEMEDRVFWDTCMAGGYP 134
            +EMEDR+FW+TCMA GYP
Sbjct: 128 KDEMEDRLFWETCMAFGYP 140

[Close]

BLAST of Lcy01g001610 vs. NCBI nr
Match: GAY36063.1 (hypothetical protein CUMW_020050 [Citrus unshiu])

HSP 1 Score: 70.9 bits (172), Expect = 9.6e-09
Identity = 53/137 (38.69%), Postives = 75/137 (54.74%), Query Frame = 0


Query: 6   DASSFFLWEDSADSEVDRLL--SLPHELESAVDDQEDARSTSCDDYSSDLRALDFQDDGD 65
           D SSF L E+SADSEVD L       +   A  D++DA S SCD        LD+    D
Sbjct: 8   DVSSFVLVEESADSEVDSLTCEMCLRDAVMATGDEDDAESCSCDTIEMQAEGLDY----D 67

Query: 66  HDVGDQAVDLIGDGRSDQVDGRRRSGAALEYNFDE--EEEEEESSNNVGVIRNM-----N 125
           HD  ++  +  GDG S     +   G + +  + +  ++EEE SS ++G+  N+     +
Sbjct: 68  HDHKNEESNDDGDGSSTDQHRQINWGGSCKIWWADAADDEEEYSSWDIGINNNISRKVKD 127

Query: 126 EMEDRVFWDTCMAGGYP 134
           EMEDR+FW+TCMA GYP
Sbjct: 128 EMEDRLFWETCMAFGYP 140

The following BLAST results are available for this feature:

BLAST of Lcy01g001610 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy01g001610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SSL9	6.0e-41	74.13	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0KBF3	1.0e-35	70.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067420 PE=4 SV=1	[more]
A0A067G8N3	5.5e-10	39.57	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g032474mg PE=4 SV=1	[more]
A0A2H5N748	4.7e-09	38.69	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_020050 PE=4 SV=1	[more]
A0A2C9UD61	2.2e-06	37.41	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G018300 PE=4 SV=...	[more]

BLAST of Lcy01g001610 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033453.1	1.2e-40	74.13	hypothetical protein E6C27_scaffold111G001140 [Cucumis melo var. makuwa]	[more]
KAG6575041.1	2.9e-37	68.94	hypothetical protein SDJN03_25680, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8646684.1	3.9e-26	67.20	hypothetical protein Csa_005604 [Cucumis sativus]	[more]
KDO74975.1	1.1e-09	39.57	hypothetical protein CISIN_1g032474mg [Citrus sinensis]	[more]
GAY36063.1	9.6e-09	38.69	hypothetical protein CUMW_020050 [Citrus unshiu]	[more]

BLAST of Lcy01g001610 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..112
None	No IPR available	PANTHER	PTHR35726:SF5	SUBFAMILY NOT NAMED	coord: 2..133
None	No IPR available	PANTHER	PTHR35726	GLUTAMIC ACID-RICH PROTEIN-LIKE	coord: 2..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy01g001610.1	Lcy01g001610.1	mRNA