Lag0042178 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0042178
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionprotein SHOOT GRAVITROPISM 6
Locationchr13: 37970534 .. 37971254 (-)
RNA-Seq ExpressionLag0042178
SyntenyLag0042178
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTTCCATTGCTTCCTGGTTGTTTCATCTAAAGAAATGTTTGTTGAGTTTCTTGTGAGTCTCACTGCCATCAAAATTGAAGACAGAAATGATCCTAAAAGTTTAAAGGACTTAGCTGGGTTGAAAGACTTGAAAGAGAACTTGATAAAGGTGCTGCAAAAGCTGTATTAGAGCTTTATGAGGTTGTTATGCATGAGCTGTTTTCATCAGTTTTGAGGGAGCAGTTTGACATGGAATATTTTGGTGAGGGTTTTAAATGAAGGTTGCTTTTTTCTCGGATAGATTGGCTGAAGGATCTTGAAATTAAAGAACTCGAATCATCTTTCCCATGAATCAAGGGTTTGAGTTATCTCTAGAATCAAGGGCACAAGCTGACTTAAAGTTTACCTATGTTGTTTCCTGTCAAATATATGGGCAACAAAAGCAGAGAAAAGCTCCAGAGGTTACTGATATTGCTTTCTTGCTGCAAAGAATTTTCAGATGTGAATAAGGACATCAATTGGGTTATATCTCTTGAAAATGCTTTCAGCAATCAATATGAACTTTATGTCTTGATCATTGATGATGATTATTCTGCCCTTCTTCACAGCTTGGTTTGGCAAAAGAAATGGGATTGGTTGCAACATCCCATTTGGATACGATATTGGAAAAGCTGAAAGACATTCTAGTTAATGTGGAGCATAGTTTTTTTCCTGAGATTCCTGTTCTGCTGCTCTGA

mRNA sequence

ATGGTGTTCCATTGCTTCCTGGTTGTTTCATCTAAAGAAATGTTTGTTGAGTTTCTTGTGAGTCTCACTGCCATCAAAATTGAAGACAGAAATGATCCTAAAAGTTTAAAGGACTTAGCTGGGTTGAAAGACTTGAAAGAGAACTTGATAAAGCTTGGTTTGGCAAAAGAAATGGGATTGGTTGCAACATCCCATTTGGATACGATATTGGAAAAGCTGAAAGACATTCTAGTTAATGTGGAGCATAGTTTTTTTCCTGAGATTCCTGTTCTGCTGCTCTGA

Coding sequence (CDS)

ATGGTGTTCCATTGCTTCCTGGTTGTTTCATCTAAAGAAATGTTTGTTGAGTTTCTTGTGAGTCTCACTGCCATCAAAATTGAAGACAGAAATGATCCTAAAAGTTTAAAGGACTTAGCTGGGTTGAAAGACTTGAAAGAGAACTTGATAAAGCTTGGTTTGGCAAAAGAAATGGGATTGGTTGCAACATCCCATTTGGATACGATATTGGAAAAGCTGAAAGACATTCTAGTTAATGTGGAGCATAGTTTTTTTCCTGAGATTCCTGTTCTGCTGCTCTGA

Protein sequence

MVFHCFLVVSSKEMFVEFLVSLTAIKIEDRNDPKSLKDLAGLKDLKENLIKLGLAKEMGLVATSHLDTILEKLKDILVNVEHSFFPEIPVLLL
Homology
[Close]
BLAST of Lag0042178 vs. NCBI nr
Match: KAG8374197.1 (hypothetical protein BUALT_Bualt11G0106000 [Buddleja alternifolia])

HSP 1 Score: 58.9 bits (141), Expect = 2.6e-05
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 0 

Query: 26  KIEDRNDPKSLKDLAGLK-DLKENLIKLGLAKEMGLVATSHLDTILEKLKDILVNVEHSF 85
           K+ DR   ++  DL  ++ D+   + ++GLAK MGLVA SHLDT+LEKLKDIL NV HS 
Sbjct: 76  KVRDRTYVRAKIDLMYMQADIALPVNRVGLAKAMGLVAASHLDTVLEKLKDILDNVGHSI 135

Query: 86  FPEI 89
           F  I
Sbjct: 136 FQRI 139

[Close]
BLAST of Lag0042178 vs. NCBI nr
Match: XP_022143882.1 (protein SHOOT GRAVITROPISM 6 [Momordica charantia])

HSP 1 Score: 57.4 bits (137), Expect = 7.7e-05
Identity = 40/92 (43.48%), Postives = 51/92 (55.43%), Query Frame = 0 

Query: 1   MVFHCFLVVSSKEMFVEFLVSLTAIKIEDRNDPKSLKDLAGLK------DLKENLIKLGL 60
           M  HC+LV SS EMFVE+LV   AIKIEDR+DP S K+LAGL         K   +K+G 
Sbjct: 426 MASHCYLVGSSGEMFVEYLVRHCAIKIEDRSDPGSSKELAGLNGAYVPFQYKRMEVKIGA 485

Query: 61  AKEMGLVATSHLDTILEKLKDILVNVEHSFFP 87
              + L A S    +L  L   +  +EH  +P
Sbjct: 486 VSPIQLRAISEKSLLL--LTITIPEMEHILWP 515

[Close]
BLAST of Lag0042178 vs. NCBI nr
Match: XP_008462510.1 (PREDICTED: protein SHOOT GRAVITROPISM 6 [Cucumis melo])

HSP 1 Score: 57.4 bits (137), Expect = 7.7e-05
Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 0 

Query: 25  IKIEDRNDPKSLKDLAGLKDLKENLI----KLGLAKEMGLVATSHLDTILEKLKDILVNV 84
           I ++  ND   + D   L   + N+     +LGLAK MGLVA+SHLDT+LEKLKDIL N+
Sbjct: 683 ILLQKINDRPYVHDKIDLMYKQANIAVPTNRLGLAKAMGLVASSHLDTVLEKLKDILDNM 742

Query: 85  EHSFF 86
            HSFF
Sbjct: 743 GHSFF 747

[Close]
BLAST of Lag0042178 vs. NCBI nr
Match: TYK07351.1 (protein SHOOT GRAVITROPISM 6 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 7.7e-05
Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 0 

Query: 25  IKIEDRNDPKSLKDLAGLKDLKENLI----KLGLAKEMGLVATSHLDTILEKLKDILVNV 84
           I ++  ND   + D   L   + N+     +LGLAK MGLVA+SHLDT+LEKLKDIL N+
Sbjct: 625 ILLQKINDRPYVHDKIDLMYKQANIAVPTNRLGLAKAMGLVASSHLDTVLEKLKDILDNM 684

Query: 85  EHSFF 86
            HSFF
Sbjct: 685 GHSFF 689

[Close]
BLAST of Lag0042178 vs. NCBI nr
Match: CDP15300.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-04
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 51  KLGLAKEMGLVATSHLDTILEKLKDILVNVEHSFFPEI 89
           +LGLAK MGLVA SHLDT+LEKLKDIL NV  SFF  I
Sbjct: 711 RLGLAKAMGLVAASHLDTVLEKLKDILDNVGQSFFQRI 748

[Close]
BLAST of Lag0042178 vs. ExPASy Swiss-Prot
Match: F4IP13 (Protein SHOOT GRAVITROPISM 6 OS=Arabidopsis thaliana OX=3702 GN=SGR6 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.6e-05
Identity = 26/38 (68.42%), Postives = 29/38 (76.32%), Query Frame = 0 

Query: 51  KLGLAKEMGLVATSHLDTILEKLKDILVNVEHSFFPEI 89
           +LGLAK MGLVA SHLDT+LEKLK I+ NV  S F  I
Sbjct: 705 RLGLAKAMGLVAASHLDTVLEKLKIIVDNVGQSIFQRI 742

The following BLAST results are available for this feature:
BLAST of Lag0042178 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG8374197.12.6e-0553.13hypothetical protein BUALT_Bualt11G0106000 [Buddleja alternifolia][more]
XP_022143882.17.7e-0543.48protein SHOOT GRAVITROPISM 6 [Momordica charantia][more]
XP_008462510.17.7e-0552.31PREDICTED: protein SHOOT GRAVITROPISM 6 [Cucumis melo][more]
TYK07351.17.7e-0552.31protein SHOOT GRAVITROPISM 6 [Cucumis melo var. makuwa][more]
CDP15300.11.0e-0476.32unnamed protein product [Coffea canephora][more]
BLAST of Lag0042178 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4IP131.6e-0568.42Protein SHOOT GRAVITROPISM 6 OS=Arabidopsis thaliana OX=3702 GN=SGR6 PE=2 SV=1[more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0042178.1Lag0042178.1mRNA