Lag0042158 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0042158
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionprotein FAR-RED ELONGATED HYPOCOTYL 3-like
Locationchr13: 37575394 .. 37575735 (+)
RNA-Seq ExpressionLag0042158
SyntenyLag0042158
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGAGGGTCGTTACTTCAATCATGTGTTCATGGCACTTGGGTCTTCGATCAGAGGGTTCTTGAACTCTATTTGCCCGGTTTTGGTAGTAGATGGGACCCACATGAGGGGAAAGTTCAATGGAAAGCTCCTAATTGCAGTAGGCATCGATGACAACAACCAAATATACCCTGTAGGGTTTGGCATCGGGACTGGAGAAATAGATGAATCGTGGACCTACTTTTTCCGACAAATGGAGTGTGCTATTGGTCAACTTAATCCTCTAGTGATTGTATTAGATACACACAAGAGCATATGCAAGGCAGTACGAACTGTATTTCTGATGCGAGCGGTGGACTGA

mRNA sequence

ATGGACGAGGGTCGTTACTTCAATCATGTGTTCATGGCACTTGGGTCTTCGATCAGAGGGTTCTTGAACTCTATTTGCCCGGTTTTGGTAGTAGATGGGACCCACATGAGGGGAAAGTTCAATGGAAAGCTCCTAATTGCAGTAGGCATCGATGACAACAACCAAATATACCCTGTAGGGTTTGGCATCGGGACTGGAGAAATAGATGAATCGTGGACCTACTTTTTCCGACAAATGGAGTGTGCTATTGGTCAACTTAATCCTCTAGTGATTGTATTAGATACACACAAGAGCATATGCAAGGCAGTACGAACTGTATTTCTGATGCGAGCGGTGGACTGA

Coding sequence (CDS)

ATGGACGAGGGTCGTTACTTCAATCATGTGTTCATGGCACTTGGGTCTTCGATCAGAGGGTTCTTGAACTCTATTTGCCCGGTTTTGGTAGTAGATGGGACCCACATGAGGGGAAAGTTCAATGGAAAGCTCCTAATTGCAGTAGGCATCGATGACAACAACCAAATATACCCTGTAGGGTTTGGCATCGGGACTGGAGAAATAGATGAATCGTGGACCTACTTTTTCCGACAAATGGAGTGTGCTATTGGTCAACTTAATCCTCTAGTGATTGTATTAGATACACACAAGAGCATATGCAAGGCAGTACGAACTGTATTTCTGATGCGAGCGGTGGACTGA

Protein sequence

MDEGRYFNHVFMALGSSIRGFLNSICPVLVVDGTHMRGKFNGKLLIAVGIDDNNQIYPVGFGIGTGEIDESWTYFFRQMECAIGQLNPLVIVLDTHKSICKAVRTVFLMRAVD
Homology
BLAST of Lag0042158 vs. NCBI nr
Match: XP_038882416.1 (protein FAR1-RELATED SEQUENCE 8-like [Benincasa hispida])

HSP 1 Score: 146.7 bits (369), Expect = 1.2e-31
Identity = 66/107 (61.68%), Postives = 85/107 (79.44%), Query Frame = 0

Query: 1   MDEGRYFNHVFMALGSSIRGFLNSICPVLVVDGTHMRGKFNGKLLIAVGIDDNNQIYPVG 60
           + E +YF HVFMAL +SIRGFLN I P+L+V GTH+RGK++GKLL+A G+D NNQIYPV 
Sbjct: 166 LQEDKYFKHVFMALNASIRGFLNCIRPILIVGGTHLRGKYSGKLLLATGVDGNNQIYPVT 225

Query: 61  FGIGTGEIDESWTYFFRQMECAIGQLNPLVIVLDTHKSICKAVRTVF 108
           FGI +GE +ESW +F +Q+ CAIGQ++ +VIV D H SI K + TVF
Sbjct: 226 FGISSGETNESWVWFLQQLICAIGQVHDVVIVSDRHPSIKKVIITVF 272

BLAST of Lag0042158 vs. NCBI nr
Match: XP_038887209.1 (uncharacterized protein LOC120077397 [Benincasa hispida])

HSP 1 Score: 132.9 bits (333), Expect = 1.8e-27
Identity = 63/107 (58.88%), Postives = 80/107 (74.77%), Query Frame = 0

Query: 1   MDEGRYFNHVFMALGSSIRGFLNSICPVLVVDGTHMRGKFNGKLLIAVGIDDNNQIYPVG 60
           + E +YF +VFMALG+SIR FLN I PVL+VDGT +R K++GKLL+A+ +D+NNQIY V 
Sbjct: 315 LQEDKYFKYVFMALGASIRVFLNCIQPVLIVDGTRLRDKYSGKLLLAIEVDENNQIYSVA 374

Query: 61  FGIGTGEIDESWTYFFRQMECAIGQLNPLVIVLDTHKSICKAVRTVF 108
           FGI   E DESW +F +Q+ C IGQ+  LVIV D H SI K + TVF
Sbjct: 375 FGIFGRETDESWVWFLQQLRCVIGQVYNLVIVSDRHPSIKKEIITVF 421

BLAST of Lag0042158 vs. NCBI nr
Match: XP_038885923.1 (uncharacterized protein LOC120076231 [Benincasa hispida])

HSP 1 Score: 125.6 bits (314), Expect = 2.8e-25
Identity = 59/96 (61.46%), Postives = 74/96 (77.08%), Query Frame = 0

Query: 12  MALGSSIRGFLNSICPVLVVDGTHMRGKFNGKLLIAVGIDDNNQIYPVGFGIGTGEIDES 71
           MA G++IRGFLN I PVL+VD TH+R K++GKLL+A  +D NNQIY V F I +GE DES
Sbjct: 1   MAFGATIRGFLNCIRPVLIVDVTHLRDKYSGKLLLATRVDGNNQIYQVAFDISSGETDES 60

Query: 72  WTYFFRQMECAIGQLNPLVIVLDTHKSICKAVRTVF 108
           W +F +Q+ CAIGQ++ LVIV D H SI KA+ TVF
Sbjct: 61  WVWFLQQLRCAIGQVHDLVIVSDRHPSIKKAIITVF 96

BLAST of Lag0042158 vs. NCBI nr
Match: XP_022157605.1 (protein FAR1-RELATED SEQUENCE 4-like [Momordica charantia])

HSP 1 Score: 124.8 bits (312), Expect = 4.8e-25
Identity = 59/107 (55.14%), Postives = 75/107 (70.09%), Query Frame = 0

Query: 1   MDEGRYFNHVFMALGSSIRGFLNSICPVLVVDGTHMRGKFNGKLLIAVGIDDNNQIYPVG 60
           + +G+YF +VFMALG  IRGFL  I PVLVVDG H++GKF G LL A G + NNQIYPV 
Sbjct: 56  LKDGKYFKYVFMALGQLIRGFLACIRPVLVVDGAHLKGKFRGVLLTAFGSNANNQIYPVA 115

Query: 61  FGIGTGEIDESWTYFFRQMECAIGQLNPLVIVLDTHKSICKAVRTVF 108
           F I  GE   SW +F  Q++ A+G +N LV V D H++ICKA+  +F
Sbjct: 116 FAIVDGETVASWVWFMTQLKGALGVVNNLVFVSDRHQTICKAIDKIF 162

BLAST of Lag0042158 vs. NCBI nr
Match: XP_022146373.1 (uncharacterized protein LOC111015601 [Momordica charantia])

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-24
Identity = 59/108 (54.63%), Postives = 75/108 (69.44%), Query Frame = 0

Query: 1   MDEGRYFNHVFMALGSSIRGFLNSICPVLVVDGTHMRGKFNGKLLIAVGIDDNNQIYPVG 60
           ++ G+YF +VFM LG SIR FL  I PVLVVDG H++GKF G LL A G+D NNQIYPV 
Sbjct: 56  LEGGKYFKYVFMTLGQSIRDFLGCIRPVLVVDGAHLKGKFRGVLLSAFGVDANNQIYPVA 115

Query: 61  FGIGTGEIDESWTYFFRQMECAIGQLNPLVIVLDTHKSICKAVRTVFL 109
           F I  GE   SW +F  Q++ A+  ++ LV V D H++ICKA+  VFL
Sbjct: 116 FAIVDGETVASWVWFMTQIKRALAGVDNLVFVSDRHQTICKAIDKVFL 163

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038882416.11.2e-3161.68protein FAR1-RELATED SEQUENCE 8-like [Benincasa hispida][more]
XP_038887209.11.8e-2758.88uncharacterized protein LOC120077397 [Benincasa hispida][more]
XP_038885923.12.8e-2561.46uncharacterized protein LOC120076231 [Benincasa hispida][more]
XP_022157605.14.8e-2555.14protein FAR1-RELATED SEQUENCE 4-like [Momordica charantia][more]
XP_022146373.11.1e-2454.63uncharacterized protein LOC111015601 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018289MULE transposase domainPFAMPF10551MULEcoord: 28..107
e-value: 1.9E-15
score: 57.1
NoneNo IPR availablePANTHERPTHR31973:SF135SUBFAMILY NOT NAMEDcoord: 5..102
NoneNo IPR availablePANTHERPTHR31973POLYPROTEIN, PUTATIVE-RELATEDcoord: 5..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0042158.1Lag0042158.1mRNA