Lag0042146 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0042146
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	DNA/RNA polymerases superfamily protein
Location	chr13: 37359765 .. 37361362 (-)
RNA-Seq Expression	Lag0042146
Synteny	Lag0042146

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGTACTTGGTAAGGCTAACGTAGTAGCAGATGCATTAAGTAGGAAGTCGAGACTTCCGAAGAGTGCCTTGTGTGGTATTCGAGCAACCTTGCTAAGTGAGTTAAGAGGTTTAAAGGCGGTTGTGACTACAGAAAGTTCAGGTAGTCTTTTAGCTCAATTTCAGATTAGGTCTTCTCTAGTAGCAGAGATTGTGAGAAGACAGCCAGAGGATGGTAACTTACAGAAGATGCTTGCAAAGTCCAAGCATGGCCTGAGGTAGAATTTGAGTTGAGAGCAGACGAAGCCATAGTTAAGCAGGGAAGACTATGTGTTCCAAGTATTAGTAAGCTTAAGGGTGCTATACTGGAGGAAGCTCACAGTTCAGCTTACGCTATGCATCCAGAAAGCACCAAGATGTACAGAACTATGAAGAAAACTTATTGGTGGCCTGGTATGAAGCGAGAGATAGCCGAATATGTTGATAGATGTTTGATCTACCAATATATTCTGCACAAAATAACTTCAAGGCATCCATTCTTCCAAATGGGTTAAAACATATAATATACGTCTAAAAGCAACCCTATTTAGCACAAAAGACACACAAAATACTAAAGAACTAAGGCCTAAATGGTACTGTCGTGGGTTGTGGGCATCAATCTATTTATGATGAAGTGAAGCCACACTGCCGGTTCTAGCTTCAACATGTCATGCCCCAAGCGCATCATGCTCTAGCACATAATTGGCCAAGCTTTTCCTGATGCAACAATATATTAGAATTAGTGCAGTTTTGTATGATTTTTAAAGATAATAATCAATATGAGCACATTAATACAAAAAATCAATATTACTGCATCTAGCATATAAATTAGTTAAAACTTGGGTATTTTCACTCTCTTGAGGCTCACAATAAGCTTAAATTAGACGCCTTATAGCTTGATATTTTCAAGTTATCAAACCCCCAAACTTAAATTATTGCTTGTCCTCAAGCAATACTACAACAACACTTTTTGCTTCTCAGATTGCCACAATGCCTCATGCCTCACTACAATTCCTTACCGCACTCTACAAAGATTTACCTCAGCAGCGCAAAATACCAACATCCAAATTTCTAAACCTAAGGTCAACTTTGCTTTTACTACCTCAAAATACCTTTTTCTCACTTATATGGATTTCTCTCATTTCTCCTTCCTACACTTCTTCCTCTTTACTAGCTTACTTCTAAATCAAAACTTGGATGCACTAACGTTTTTTTTTTAAATGTTTACTCATAGCGCTCACGTTGCCAGAATTTTTTTTTTCAGATGAGAATCATTTGAGATGTAGTGCCTTCGTTCTGGCTTGCCAACATTCGTGATGAAAGCATCCAACTACGAGCTCCTCATCTTTCAGGTTGCCGAGGCATGCTCATTTCTTTTCAGCACTTTCATGCAAAGGCAAACGATGGAATACAGAAACATGTGTTATGCACCCCCCCAAACTTAAAATGGACAATGTCCTCATTGGACCCCCAAACTTGTTTTGCACTATGCGGTAGGGGAAGAGTTTTTAAGAATGCGTGAGTCACATTACACAAGAAGATTTGGTGCATTGGCTAGTAGAGAAGAAGTAATGTAG

mRNA sequence

ATGACTGTACTTGGTAAGGCTAACGTAGTAGCAGATGCATTAAGTAGGAAGTCGAGACTTCCGAAGAGTGCCTTGTGTGGTATTCGAGCAACCTTGCTAAGTGAGTTAAGAGGTTTAAAGGCGGTTGTGACTACAGAAAGTTCAGAAGATGCTTGCAAAGTCCAAGCATGGCCTGAGGTAGAATTTGAGTTGAGAGCAGACGAAGCCATAGTTAAGCAGGGAAGACTATGTGTTCCAAGTATTAGTAAGCTTAAGGGTGCTATACTGGAGGAAGCTCACAGTTCAGCTTACGCTATGCATCCAGAAAGCACCAAGATGTACAGAACTATGAAGAAAACTTATTGGTGGCCTGTGCCTTCGTTCTGGCTTGCCAACATTCGTGATGAAAGCATCCAACTACGAGCTCCTCATCTTTCAGGGGAAGAGTTTTTAAGAATGCGTGAGTCACATTACACAAGAAGATTTGGTGCATTGGCTAGTAGAGAAGAAGTAATGTAG

Coding sequence (CDS)

ATGACTGTACTTGGTAAGGCTAACGTAGTAGCAGATGCATTAAGTAGGAAGTCGAGACTTCCGAAGAGTGCCTTGTGTGGTATTCGAGCAACCTTGCTAAGTGAGTTAAGAGGTTTAAAGGCGGTTGTGACTACAGAAAGTTCAGAAGATGCTTGCAAAGTCCAAGCATGGCCTGAGGTAGAATTTGAGTTGAGAGCAGACGAAGCCATAGTTAAGCAGGGAAGACTATGTGTTCCAAGTATTAGTAAGCTTAAGGGTGCTATACTGGAGGAAGCTCACAGTTCAGCTTACGCTATGCATCCAGAAAGCACCAAGATGTACAGAACTATGAAGAAAACTTATTGGTGGCCTGTGCCTTCGTTCTGGCTTGCCAACATTCGTGATGAAAGCATCCAACTACGAGCTCCTCATCTTTCAGGGGAAGAGTTTTTAAGAATGCGTGAGTCACATTACACAAGAAGATTTGGTGCATTGGCTAGTAGAGAAGAAGTAATGTAG

Protein sequence

MTVLGKANVVADALSRKSRLPKSALCGIRATLLSELRGLKAVVTTESSEDACKVQAWPEVEFELRADEAIVKQGRLCVPSISKLKGAILEEAHSSAYAMHPESTKMYRTMKKTYWWPVPSFWLANIRDESIQLRAPHLSGEEFLRMRESHYTRRFGALASREEVM

Homology

[Close]

BLAST of Lag0042146 vs. NCBI nr
Match: KAA0042035.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 169.1 bits (427), Expect = 3.2e-38
Identity = 94/142 (66.20%), Postives = 102/142 (71.83%), Query Frame = 0


Query: 4    LGKANVVADALSRKSRLPKSALCGIRATLLSELRGLKAVVTTESS--------------- 63
            LGKANVVADALSRKSRLPKSALCGIRA+LLSELRG KAV+  ESS               
Sbjct: 1053 LGKANVVADALSRKSRLPKSALCGIRASLLSELRGFKAVMIAESSGSLLAQFQLRSSLVA 1112

Query: 64   -------EDA------CKVQAWPEVEFELRADEAIVKQGRLCVPSISKLKGAILEEAHSS 118
                   ED+       K +  PE EFELR D AIVKQGRLCVP+IS+LKG ILEEAH+S
Sbjct: 1113 EIVGRQPEDSNLQKMLAKAKQGPEEEFELRTDGAIVKQGRLCVPNISELKGVILEEAHNS 1172

[Close]

BLAST of Lag0042146 vs. NCBI nr
Match: TYK17971.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 169.1 bits (427), Expect = 3.2e-38
Identity = 94/142 (66.20%), Postives = 102/142 (71.83%), Query Frame = 0


Query: 4    LGKANVVADALSRKSRLPKSALCGIRATLLSELRGLKAVVTTESS--------------- 63
            LGKANVVADALSRKSRLPKSALCGIRA+LLSELRG KAV+  ESS               
Sbjct: 1053 LGKANVVADALSRKSRLPKSALCGIRASLLSELRGFKAVMIAESSGSLLAQFQLRSSLVA 1112

Query: 64   -------EDA------CKVQAWPEVEFELRADEAIVKQGRLCVPSISKLKGAILEEAHSS 118
                   ED+       K +  PE EFELR D AIVKQGRLCVP+IS+LKG ILEEAH+S
Sbjct: 1113 EIVGRQPEDSNLQKMLAKAKQGPEEEFELRTDGAIVKQGRLCVPNISELKGVILEEAHNS 1172

[Close]

BLAST of Lag0042146 vs. NCBI nr
Match: KAA0037251.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 165.6 bits (418), Expect = 3.6e-37
Identity = 93/141 (65.96%), Postives = 102/141 (72.34%), Query Frame = 0


Query: 5    GKANVVADALSRKSRLPKSALCGIRATLLSELRGLKAVVTTESS---------------- 64
            GKANVVADALSRKSRLPKSALCGIR +LLSELRG KAV+T +SS                
Sbjct: 1313 GKANVVADALSRKSRLPKSALCGIRESLLSELRGFKAVMTAKSSGSLLAQFQVRSSLVAE 1372

Query: 65   ------EDA------CKVQAWPEVEFELRADEAIVKQGRLCVPSISKLKGAILEEAHSSA 118
                  ED+       KV+  PE EFELR D AIVKQGRLCVP+IS+LKGAILEEAH+SA
Sbjct: 1373 IVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSA 1432

[Close]

BLAST of Lag0042146 vs. NCBI nr
Match: TYK07530.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 165.6 bits (418), Expect = 3.6e-37
Identity = 93/141 (65.96%), Postives = 102/141 (72.34%), Query Frame = 0


Query: 5    GKANVVADALSRKSRLPKSALCGIRATLLSELRGLKAVVTTESS---------------- 64
            GKANVVADALSRKSRLPKSALCGIR +LLSELRG KAV+T +SS                
Sbjct: 1080 GKANVVADALSRKSRLPKSALCGIRESLLSELRGFKAVMTAKSSGSLLAQFQVRSSLVAE 1139

Query: 65   ------EDA------CKVQAWPEVEFELRADEAIVKQGRLCVPSISKLKGAILEEAHSSA 118
                  ED+       KV+  PE EFELR D AIVKQGRLCVP+IS+LKGAILEEAH+SA
Sbjct: 1140 IVGRQPEDSNLQKMLAKVKQGPETEFELRTDGAIVKQGRLCVPNISELKGAILEEAHNSA 1199

[Close]

BLAST of Lag0042146 vs. NCBI nr
Match: KAA0059550.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 165.2 bits (417), Expect = 4.7e-37
Identity = 88/112 (78.57%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 5    GKANVVADALSRKSRLPKSALCGIRATLLSELRGLKAVVTTESSEDACKVQAWPEVEFEL 64
            GKANVVADALSRKSRLPKSALCGIR  LL+ELRG K VVTT   ED+  + A  +VEFEL
Sbjct: 958  GKANVVADALSRKSRLPKSALCGIRVALLNELRGSKTVVTT---EDSGSLLAQFQVEFEL 1017

Query: 65   RADEAIVKQGRLCVPSISKLKGAILEEAHSSAYAMHPESTKMYRTMKKTYWW 117
            R D AIVKQ RLCVP+IS+LK AILEEAHSSAYAMHP STKMYRT+KKTYWW
Sbjct: 1018 RTDGAIVKQERLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTYWW 1066

The following BLAST results are available for this feature:

BLAST of Lag0042146 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042035.1	3.2e-38	66.20	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK17971.1	3.2e-38	66.20	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0037251.1	3.6e-37	65.96	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK07530.1	3.6e-37	65.96	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0059550.1	4.7e-37	78.57	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Lag0042146 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 83..117 e-value: 8.5E-7 score: 28.9
None	No IPR available	GENE3D	1.10.340.70		coord: 48..118 e-value: 5.4E-8 score: 35.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0042146.1	Lag0042146.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding