Lag0042096 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0042096
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr13: 36356167 .. 36356577 (-)
RNA-Seq ExpressionLag0042096
SyntenyLag0042096
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGATCAAGGCAATTCATTTAGTAAAGCTATGACAGAAAACAAAATGGTTCAACAAAATCCTGTAAACAAAGGCAAACAAGTGGAAACTAATGTTTCCCGAGAGATCAAGAATTCGGAAGGATTGAACAACAAGCGAGCTTCCAGTACATACGCCAGGCCAACCCTTGGTAAATGCTTTCATTGCAATCAGACCGGTCATTTGTCCAACGAATGCCCTCAAAGACAGACCTTTTTAATTGCTGACAATGTGGATTATCAAGATGATGACGATGAGCATGACACAGACGACAACACTGATTTTCTTGAACCTGATGAAGGGGAGCCAATTTCCTTAGTAATTCAACAACTCCTTGCTCCAAAATCTGACCCAAGCTACCAACGCCACGCCTTGTTCAAGACTCGATGA

mRNA sequence

ATGGGAGATCAAGGCAATTCATTTAGTAAAGCTATGACAGAAAACAAAATGGTTCAACAAAATCCTGTAAACAAAGGCAAACAAGTGGAAACTAATGTTTCCCGAGAGATCAAGAATTCGGAAGGATTGAACAACAAGCGAGCTTCCAGTACATACGCCAGGCCAACCCTTGGTAAATGCTTTCATTGCAATCAGACCGGTCATTTGTCCAACGAATGCCCTCAAAGACAGACCTTTTTAATTGCTGACAATGTGGATTATCAAGATGATGACGATGAGCATGACACAGACGACAACACTGATTTTCTTGAACCTGATGAAGGGGAGCCAATTTCCTTAGTAATTCAACAACTCCTTGCTCCAAAATCTGACCCAAGCTACCAACGCCACGCCTTGTTCAAGACTCGATGA

Coding sequence (CDS)

ATGGGAGATCAAGGCAATTCATTTAGTAAAGCTATGACAGAAAACAAAATGGTTCAACAAAATCCTGTAAACAAAGGCAAACAAGTGGAAACTAATGTTTCCCGAGAGATCAAGAATTCGGAAGGATTGAACAACAAGCGAGCTTCCAGTACATACGCCAGGCCAACCCTTGGTAAATGCTTTCATTGCAATCAGACCGGTCATTTGTCCAACGAATGCCCTCAAAGACAGACCTTTTTAATTGCTGACAATGTGGATTATCAAGATGATGACGATGAGCATGACACAGACGACAACACTGATTTTCTTGAACCTGATGAAGGGGAGCCAATTTCCTTAGTAATTCAACAACTCCTTGCTCCAAAATCTGACCCAAGCTACCAACGCCACGCCTTGTTCAAGACTCGATGA

Protein sequence

MGDQGNSFSKAMTENKMVQQNPVNKGKQVETNVSREIKNSEGLNNKRASSTYARPTLGKCFHCNQTGHLSNECPQRQTFLIADNVDYQDDDDEHDTDDNTDFLEPDEGEPISLVIQQLLAPKSDPSYQRHALFKTR
Homology
BLAST of Lag0042096 vs. NCBI nr
Match: KAA0059834.1 (uncharacterized protein E6C27_scaffold108G001170 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 2.9e-16
Identity = 51/133 (38.35%), Postives = 80/133 (60.15%), Query Frame = 0

Query: 7   SFSKAMTENKMVQQNPVNK--GKQVETNVSREIKNSEGLNNKRASSTYARPTLGKCFHCN 66
           +FSK  + +    + P     GK  + +     K  +  +  ++ +TY RP+L KCF C 
Sbjct: 158 NFSKKQSYSSRTNEQPSTSVGGKSKDVDTQDAAKKKDNTDKGKSQNTYTRPSLEKCFRCG 217

Query: 67  QTGHLSNECPQRQTFLIADNVDYQDDDDEHDTDDNTDFLEPDEGEPISLVIQQ-LLAPKS 126
           Q+GHLSN CPQR+T  +AD       +D+ + ++  +F+E D+G+ IS VIQ+ L+APK 
Sbjct: 218 QSGHLSNNCPQRETISLADKESNSISEDDKEEEEEAEFIEADDGDRISYVIQRVLIAPKE 277

Query: 127 DPSYQRHALFKTR 137
           + + QRH+LFKTR
Sbjct: 278 ETNPQRHSLFKTR 290

BLAST of Lag0042096 vs. NCBI nr
Match: KAA0031954.1 (zf-CCHC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-15
Identity = 51/132 (38.64%), Postives = 77/132 (58.33%), Query Frame = 0

Query: 6   NSFSKAMTENKMVQQNPVNKGKQVETNVSREIKNSEGLNNKRASSTYARPTLGKCFHCNQ 65
           N F+KA  +     Q    KGK+V+T      K  E  N  ++ + Y  P+LGKCF C Q
Sbjct: 181 NYFNKASDQPSTSLQ---GKGKEVDTQELNSEKRKETANRSKSQNNYTHPSLGKCFRCGQ 240

Query: 66  TGHLSNECPQRQTFLIADNVDYQDDDDEHDTDDNTDFLEPDEGEPISLVIQQ-LLAPKSD 125
           TGHLSN CPQ++T  +AD  +    ++  D ++  + +E D G+ +S ++Q+ LLAP+ +
Sbjct: 241 TGHLSNTCPQQKTIALADEEEDSKSENSKDAEEEVELIEADNGDRVSCILQRVLLAPREE 300

Query: 126 PSYQRHALFKTR 137
              QRH+ FKTR
Sbjct: 301 RDPQRHSRFKTR 309

BLAST of Lag0042096 vs. NCBI nr
Match: XP_031745468.1 (uncharacterized protein LOC116405837 [Cucumis sativus] >XP_031745508.1 uncharacterized protein LOC116405854 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 3.2e-15
Identity = 50/113 (44.25%), Postives = 71/113 (62.83%), Query Frame = 0

Query: 25  KGKQVETNVSREIKNSEGLNNKRASSTYARPTLGKCFHCNQTGHLSNECPQRQTFLIADN 84
           KGK+++       +  E        + Y+RP+LGKCF C QTGHLSN CPQR+T  IA++
Sbjct: 126 KGKEIDNQEVAVERKKEQTFKPSGQNNYSRPSLGKCFRCGQTGHLSNNCPQRKTIAIAED 185

Query: 85  VDYQDDDDEHDTDDNTDFLEPDEGEPISLVIQQLL-APKSDPSYQRHALFKTR 137
              Q  +D  + ++ T+ +E D+GE +S VIQ+LL  PK + + QRH LFKTR
Sbjct: 186 -GGQTSEDSIEAEEETELIEADDGERVSCVIQRLLITPKEEKNLQRHCLFKTR 237

BLAST of Lag0042096 vs. NCBI nr
Match: XP_031743026.1 (uncharacterized protein LOC116404533 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 4.1e-15
Identity = 50/113 (44.25%), Postives = 70/113 (61.95%), Query Frame = 0

Query: 25  KGKQVETNVSREIKNSEGLNNKRASSTYARPTLGKCFHCNQTGHLSNECPQRQTFLIADN 84
           KGK+++       +  E        + Y+RP+LGKCF C QTGHLSN CPQR+T  IA+ 
Sbjct: 371 KGKEIDNQEVAVERKKEQTFKPSGQNNYSRPSLGKCFRCGQTGHLSNNCPQRKTIAIAEE 430

Query: 85  VDYQDDDDEHDTDDNTDFLEPDEGEPISLVIQQLL-APKSDPSYQRHALFKTR 137
              Q  +D  + ++ T+ +E D+GE +S VIQ+LL  PK + + QRH LFKTR
Sbjct: 431 -GGQTSEDSIEAEEETELIEADDGERVSCVIQRLLITPKEEKNLQRHCLFKTR 482

BLAST of Lag0042096 vs. NCBI nr
Match: XP_022138328.1 (uncharacterized protein LOC111009540 isoform X2 [Momordica charantia])

HSP 1 Score: 91.7 bits (226), Expect = 5.4e-15
Identity = 43/92 (46.74%), Postives = 64/92 (69.57%), Query Frame = 0

Query: 44  NNKRASSTYARPTLGKCFHCNQTGHLSNECPQRQTFLIADNVDYQDDDDEHDTDDNTDFL 103
           ++KR ++ Y RPTLGKCF C Q  HLSNECPQR+   + D  D  + D +  T+D+  ++
Sbjct: 369 SSKRGTNPYIRPTLGKCFRCGQVDHLSNECPQRRALALVDQDDLLETDIDLPTEDDPTYV 428

Query: 104 EPDEGEPISLVIQQLLAPKSDPSYQRHALFKT 136
           EPDEG+ +S V+Q++L PK +   QR++LF+T
Sbjct: 429 EPDEGDLLSCVVQKVLTPKVEVQPQRNSLFRT 460

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0059834.12.9e-1638.35uncharacterized protein E6C27_scaffold108G001170 [Cucumis melo var. makuwa][more]
KAA0031954.11.1e-1538.64zf-CCHC domain-containing protein [Cucumis melo var. makuwa][more]
XP_031745468.13.2e-1544.25uncharacterized protein LOC116405837 [Cucumis sativus] >XP_031745508.1 uncharact... [more]
XP_031743026.14.1e-1544.25uncharacterized protein LOC116404533 [Cucumis sativus][more]
XP_022138328.15.4e-1546.74uncharacterized protein LOC111009540 isoform X2 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 59..75
e-value: 2.0E-4
score: 30.7
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 58..75
e-value: 1.2E-6
score: 28.3
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 59..75
score: 10.163686
NoneNo IPR availableGENE3D4.10.60.10coord: 53..78
e-value: 3.9E-8
score: 34.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..105
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 55..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0042096.1Lag0042096.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding