Lag0042055 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0042055
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr13: 35598385 .. 35598987 (+)
RNA-Seq Expression	Lag0042055
Synteny	Lag0042055

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCTTCAACAAACAAGACGATACCAGATCTCTCAAATTTCTCTCAATCTTCAAAAATAGAAAACCCAGGCCATAAAACTACCTCGGTTAAACTTGATGAAGAGAACTTCCTCCTGTGGAAACTTCAGGTGCTTACCAAGCTTCGAGGATATGGATTGGAACAATTTCTTGATAACGATTCTGCAATTCCTCCTAAATCCATTGCTTCTACAAATGCTGCAACGTTTGAACAAACTTTAAATCCTGATTATCAGTATTGGATTCGCCAAGACAGCTTGATTACGACGTGGCTCTTGGGTTCTATGACGAACTCACTCCTGTCTGAGATGTTAGACTGCAAAACTGCTCGTGAGGTATGGAAAATTCTTAATGCCCGTTTTTCTTCGTGCAATATGGCTAGAGTTATGGACCTTAAATCAAAACTTGAGACAATGAAGAAAGGTAGTTTAAAGCTTGAAGAATATTTTTTGAAAATTAAGAATCTTGTGGACTCACTAACAGCAGCTGGTCGAAAAATATCACATGAGGATCACATAATGCACATTTTAGCAAGATTGGGGCCGAAATATGATTCTACAGTATCAGTCAGAAAAAGATGA

mRNA sequence

ATGGAGTCTTCAACAAACAAGACGATACCAGATCTCTCAAATTTCTCTCAATCTTCAAAAATAGAAAACCCAGGCCATAAAACTACCTCGGTTAAACTTGATGAAGAGAACTTCCTCCTGTGGAAACTTCAGGTGCTTACCAAGCTTCGAGGATATGGATTGGAACAATTTCTTGATAACGATTCTGCAATTCCTCCTAAATCCATTGCTTCTACAAATGCTGCAACGTTTGAACAAACTTTAAATCCTGATTATCAGTATTGGATTCGCCAAGACAGCTTGATTACGACGTGGCTCTTGGGTTCTATGACGAACTCACTCCTGTCTGAGATGTTAGACTGCAAAACTGCTCGTGAGGTATGGAAAATTCTTAATGCCCGTTTTTCTTCGTGCAATATGGCTAGAGTTATGGACCTTAAATCAAAACTTGAGACAATGAAGAAAGGTAGTTTAAAGCTTGAAGAATATTTTTTGAAAATTAAGAATCTTGTGGACTCACTAACAGCAGCTGGTCGAAAAATATCACATGAGGATCACATAATGCACATTTTAGCAAGATTGGGGCCGAAATATGATTCTACAGTATCAGTCAGAAAAAGATGA

Coding sequence (CDS)

ATGGAGTCTTCAACAAACAAGACGATACCAGATCTCTCAAATTTCTCTCAATCTTCAAAAATAGAAAACCCAGGCCATAAAACTACCTCGGTTAAACTTGATGAAGAGAACTTCCTCCTGTGGAAACTTCAGGTGCTTACCAAGCTTCGAGGATATGGATTGGAACAATTTCTTGATAACGATTCTGCAATTCCTCCTAAATCCATTGCTTCTACAAATGCTGCAACGTTTGAACAAACTTTAAATCCTGATTATCAGTATTGGATTCGCCAAGACAGCTTGATTACGACGTGGCTCTTGGGTTCTATGACGAACTCACTCCTGTCTGAGATGTTAGACTGCAAAACTGCTCGTGAGGTATGGAAAATTCTTAATGCCCGTTTTTCTTCGTGCAATATGGCTAGAGTTATGGACCTTAAATCAAAACTTGAGACAATGAAGAAAGGTAGTTTAAAGCTTGAAGAATATTTTTTGAAAATTAAGAATCTTGTGGACTCACTAACAGCAGCTGGTCGAAAAATATCACATGAGGATCACATAATGCACATTTTAGCAAGATTGGGGCCGAAATATGATTCTACAGTATCAGTCAGAAAAAGATGA

Protein sequence

MESSTNKTIPDLSNFSQSSKIENPGHKTTSVKLDEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIASTNAATFEQTLNPDYQYWIRQDSLITTWLLGSMTNSLLSEMLDCKTAREVWKILNARFSSCNMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTVSVRKR

Homology

[Close]

BLAST of Lag0042055 vs. NCBI nr
Match: XP_022154487.1 (uncharacterized protein LOC111021757 [Momordica charantia])

HSP 1 Score: 205.7 bits (522), Expect = 3.8e-49
Identity = 100/189 (52.91%), Postives = 136/189 (71.96%), Query Frame = 0


Query: 11  DLSNFSQSSKIENPGHKTTSVKLDEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIA 70
           D +   Q+SK  NPG K + V+L+++N LLWK Q+ T L+G GLE ++D++   P + + 
Sbjct: 11  DAARIIQASKTINPGSKVSIVRLNDDNXLLWKFQIRTALQGNGLESYIDSNEDTPAQFVQ 70

Query: 71  STNAATFEQTL--NPDYQYWIRQDSLITTWLLGSMTNSLLSEMLDCKTAREVWKILNARF 130
           +T   +   +L  NP Y  WI+QD LI+ WLLGSM   +LS+MLDCK+ARE+W +L   F
Sbjct: 71  TTEDESSSSSLQQNPAYFEWIKQDKLISAWLLGSMNEDILSQMLDCKSAREIWTVLECMF 130

Query: 131 SSCNMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLG 190
           +S  +ARVM LK KLE  KKG+L L++YFLKIKNLVDSL  AG+K+S EDHIMHILA LG
Sbjct: 131 ASRTLARVMQLKLKLENFKKGNLSLKDYFLKIKNLVDSLAIAGKKLSTEDHIMHILAGLG 190

Query: 191 PKYDSTVSV 198
           P++D+ +SV
Sbjct: 191 PEFDAIISV 199

[Close]

BLAST of Lag0042055 vs. NCBI nr
Match: XP_022156747.1 (uncharacterized protein LOC111023586 [Momordica charantia])

HSP 1 Score: 188.3 bits (477), Expect = 6.2e-44
Identity = 90/158 (56.96%), Postives = 120/158 (75.95%), Query Frame = 0


Query: 42  KLQVLTKLRGYGLEQFLDNDSAIPPKSIASTNAATFEQTL--NPDYQYWIRQDSLITTWL 101
           K QVLT ++G+GLEQ++D+D   P + I + +  T   T   NP+Y +WI+QD LI+ WL
Sbjct: 19  KFQVLTAIQGHGLEQYIDSDIEPPSRFIQNGDGVTSSTTQQPNPEYFHWIKQDKLISLWL 78

Query: 102 LGSMTNSLLSEMLDCKTAREVWKILNARFSSCNMARVMDLKSKLETMKKGSLKLEEYFLK 161
           LGSM+  +LS+MLDC+  +E+W +L   F+S N+ARVM LKSKLE MKKGS+ L+ YFLK
Sbjct: 79  LGSMSEEILSQMLDCRMVKEIWTLLECTFASRNLARVMQLKSKLENMKKGSMNLKNYFLK 138

Query: 162 IKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTVSV 198
           IKNLVDSL  AG+++  +DHIMHILARLGP++DS VSV
Sbjct: 139 IKNLVDSLATAGKRLPTDDHIMHILARLGPEFDSIVSV 176

[Close]

BLAST of Lag0042055 vs. NCBI nr
Match: KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 172.9 bits (437), Expect = 2.7e-39
Identity = 90/199 (45.23%), Postives = 132/199 (66.33%), Query Frame = 0


Query: 4   STNKTIPDLSNFSQSSKIE---NPGHKTTSVKLDEENFLLWKLQVLTKLRGYGLEQFLDN 63
           S+  ++  + N   SS I      G+K + VKL+++ FLLWK Q+LT L  Y LE FL++
Sbjct: 2   SSTSSLLGVENTEASSPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLES 61

Query: 64  DSAIPPKSIAST--NAATFEQTLNPDYQYWIRQDSLITTWLLGSMTNSLLSEMLDCKTAR 123
           +S  P K + ST  ++A+   T NP Y+ W RQD LI++WLLGSM+  +L++ML CK+A+
Sbjct: 62  ESEPPSKYLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAK 121

Query: 124 EVWKILNARFSSCNMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHED 183
           E+W+ L   FSS  +A+ M  K+KL  +KKGS+ L+EYFLKI   VD+L +  + +S +D
Sbjct: 122 EIWETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDD 181

Query: 184 HIMHILARLGPKYDSTVSV 198
           HI++ILA LG  Y S +SV
Sbjct: 182 HILYILAGLGSDYQSMISV 200

[Close]

BLAST of Lag0042055 vs. NCBI nr
Match: TYK10642.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 172.9 bits (437), Expect = 2.7e-39
Identity = 90/199 (45.23%), Postives = 132/199 (66.33%), Query Frame = 0


Query: 4   STNKTIPDLSNFSQSSKIE---NPGHKTTSVKLDEENFLLWKLQVLTKLRGYGLEQFLDN 63
           S+  ++  + N   SS I      G+K + VKL+++ FLLWK Q+LT L  Y LE FL++
Sbjct: 2   SSTSSLLGVENTEASSPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLES 61

Query: 64  DSAIPPKSIAST--NAATFEQTLNPDYQYWIRQDSLITTWLLGSMTNSLLSEMLDCKTAR 123
           +S  P K + ST  ++A+   T NP Y+ W RQD LI++WLLGSM+  +L++ML CK+A+
Sbjct: 62  ESEPPSKYLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAK 121

Query: 124 EVWKILNARFSSCNMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHED 183
           E+W+ L   FSS  +A+ M  K+KL  +KKGS+ L+EYFLKI   VD+L +  + +S +D
Sbjct: 122 EIWETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDD 181

Query: 184 HIMHILARLGPKYDSTVSV 198
           HI++ILA LG  Y S +SV
Sbjct: 182 HILYILAGLGSDYQSMISV 200

[Close]

BLAST of Lag0042055 vs. NCBI nr
Match: KAA0067213.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 170.6 bits (431), Expect = 1.3e-38
Identity = 89/199 (44.72%), Postives = 132/199 (66.33%), Query Frame = 0


Query: 4   STNKTIPDLSNFSQSSKIE---NPGHKTTSVKLDEENFLLWKLQVLTKLRGYGLEQFLDN 63
           S+  ++  + N   SS I       +K + VKL ++NFLLWK Q+LT L  Y LE FL++
Sbjct: 2   SSTSSLLGVENTEASSPINQIFGSSNKISLVKLSDDNFLLWKFQILTALEAYDLENFLES 61

Query: 64  DSAIPPKSIAST--NAATFEQTLNPDYQYWIRQDSLITTWLLGSMTNSLLSEMLDCKTAR 123
           +S  P K + ST  ++A+  +T NP Y+ W RQD LI++WLLGSM+  +L++ML CK+A+
Sbjct: 62  ESEPPSKYLISTGSSSASATRTPNPTYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAK 121

Query: 124 EVWKILNARFSSCNMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHED 183
           E+W  L   FSS  +A+ M  K+KL  +KK S+ L+EYFLKI++ VD+L +  + +S +D
Sbjct: 122 EIWGTLQGIFSSRYLAQAMKFKNKLHNIKKESMPLKEYFLKIQHRVDALASINKPVSSDD 181

Query: 184 HIMHILARLGPKYDSTVSV 198
           HI++ILA LG  Y S +SV
Sbjct: 182 HILYILAGLGSDYQSMISV 200

[Close]

BLAST of Lag0042055 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 8.0e-18
Identity = 49/164 (29.88%), Postives = 87/164 (53.05%), Query Frame = 0


Query: 32  KLDEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIASTNAATFEQTLNPDYQYWIRQ 91
           KL   N+L+W  QV     GY L  FLD  + +PP +I  T+AA     +NPDY  W RQ
Sbjct: 25  KLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATI-GTDAA---PRVNPDYTRWKRQ 84

Query: 92  DSLITTWLLGSMTNSLLSEMLDCKTAREVWKILNARFSSCNMARVMDLKSKLETMKKGSL 151
           D LI + +LG+++ S+   +    TA ++W+ L   +++ +   V  L+++L+   KG+ 
Sbjct: 85  DKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTK 144

Query: 152 KLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTV 196
            +++Y   +    D L   G+ + H++ +  +L  L  +Y   +
Sbjct: 145 TIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVI 184

[Close]

BLAST of Lag0042055 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.5e-11
Identity = 44/164 (26.83%), Postives = 73/164 (44.51%), Query Frame = 0


Query: 32  KLDEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIASTNAATFEQTLNPDYQYWIRQ 91
           KL   N+L+W  QV     GY L  FLD  + +PP +I  T+A      +NPDY  W RQ
Sbjct: 25  KLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATI-GTDAV---PRVNPDYTRWRRQ 84

Query: 92  DSLITTWLLGSMTNSLLSEMLDCKTAREVWKILNARFSSCNMARVMDLKSKLETMKKGSL 151
           D LI + +LG+++ S+   +    TA ++W+ L   +++ +   V               
Sbjct: 85  DKLIYSAILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQ------------- 144

Query: 152 KLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTV 196
                 L+     D L   G+ + H++ +  +L  L   Y   +
Sbjct: 145 ------LRFITRFDQLALLGKPMDHDEQVERVLENLPDDYKPVI 165

[Close]

BLAST of Lag0042055 vs. ExPASy TrEMBL
Match: A0A6J1DLT9 (uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021757 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.8e-49
Identity = 100/189 (52.91%), Postives = 136/189 (71.96%), Query Frame = 0


Query: 11  DLSNFSQSSKIENPGHKTTSVKLDEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIA 70
           D +   Q+SK  NPG K + V+L+++N LLWK Q+ T L+G GLE ++D++   P + + 
Sbjct: 11  DAARIIQASKTINPGSKVSIVRLNDDNXLLWKFQIRTALQGNGLESYIDSNEDTPAQFVQ 70

Query: 71  STNAATFEQTL--NPDYQYWIRQDSLITTWLLGSMTNSLLSEMLDCKTAREVWKILNARF 130
           +T   +   +L  NP Y  WI+QD LI+ WLLGSM   +LS+MLDCK+ARE+W +L   F
Sbjct: 71  TTEDESSSSSLQQNPAYFEWIKQDKLISAWLLGSMNEDILSQMLDCKSAREIWTVLECMF 130

Query: 131 SSCNMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLG 190
           +S  +ARVM LK KLE  KKG+L L++YFLKIKNLVDSL  AG+K+S EDHIMHILA LG
Sbjct: 131 ASRTLARVMQLKLKLENFKKGNLSLKDYFLKIKNLVDSLAIAGKKLSTEDHIMHILAGLG 190

Query: 191 PKYDSTVSV 198
           P++D+ +SV
Sbjct: 191 PEFDAIISV 199

[Close]

BLAST of Lag0042055 vs. ExPASy TrEMBL
Match: A0A6J1DSS1 (uncharacterized protein LOC111023586 OS=Momordica charantia OX=3673 GN=LOC111023586 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 3.0e-44
Identity = 90/158 (56.96%), Postives = 120/158 (75.95%), Query Frame = 0


Query: 42  KLQVLTKLRGYGLEQFLDNDSAIPPKSIASTNAATFEQTL--NPDYQYWIRQDSLITTWL 101
           K QVLT ++G+GLEQ++D+D   P + I + +  T   T   NP+Y +WI+QD LI+ WL
Sbjct: 19  KFQVLTAIQGHGLEQYIDSDIEPPSRFIQNGDGVTSSTTQQPNPEYFHWIKQDKLISLWL 78

Query: 102 LGSMTNSLLSEMLDCKTAREVWKILNARFSSCNMARVMDLKSKLETMKKGSLKLEEYFLK 161
           LGSM+  +LS+MLDC+  +E+W +L   F+S N+ARVM LKSKLE MKKGS+ L+ YFLK
Sbjct: 79  LGSMSEEILSQMLDCRMVKEIWTLLECTFASRNLARVMQLKSKLENMKKGSMNLKNYFLK 138

Query: 162 IKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTVSV 198
           IKNLVDSL  AG+++  +DHIMHILARLGP++DS VSV
Sbjct: 139 IKNLVDSLATAGKRLPTDDHIMHILARLGPEFDSIVSV 176

[Close]

BLAST of Lag0042055 vs. ExPASy TrEMBL
Match: A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.3e-39
Identity = 90/199 (45.23%), Postives = 132/199 (66.33%), Query Frame = 0


Query: 4   STNKTIPDLSNFSQSSKIE---NPGHKTTSVKLDEENFLLWKLQVLTKLRGYGLEQFLDN 63
           S+  ++  + N   SS I      G+K + VKL+++ FLLWK Q+LT L  Y LE FL++
Sbjct: 2   SSTSSLLGVENTEASSPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLES 61

Query: 64  DSAIPPKSIAST--NAATFEQTLNPDYQYWIRQDSLITTWLLGSMTNSLLSEMLDCKTAR 123
           +S  P K + ST  ++A+   T NP Y+ W RQD LI++WLLGSM+  +L++ML CK+A+
Sbjct: 62  ESEPPSKYLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAK 121

Query: 124 EVWKILNARFSSCNMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHED 183
           E+W+ L   FSS  +A+ M  K+KL  +KKGS+ L+EYFLKI   VD+L +  + +S +D
Sbjct: 122 EIWETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDD 181

Query: 184 HIMHILARLGPKYDSTVSV 198
           HI++ILA LG  Y S +SV
Sbjct: 182 HILYILAGLGSDYQSMISV 200

[Close]

BLAST of Lag0042055 vs. ExPASy TrEMBL
Match: A0A5D3CH97 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00040 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.3e-39
Identity = 90/199 (45.23%), Postives = 132/199 (66.33%), Query Frame = 0


Query: 4   STNKTIPDLSNFSQSSKIE---NPGHKTTSVKLDEENFLLWKLQVLTKLRGYGLEQFLDN 63
           S+  ++  + N   SS I      G+K + VKL+++ FLLWK Q+LT L  Y LE FL++
Sbjct: 2   SSTSSLLGVENTEASSPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLES 61

Query: 64  DSAIPPKSIAST--NAATFEQTLNPDYQYWIRQDSLITTWLLGSMTNSLLSEMLDCKTAR 123
           +S  P K + ST  ++A+   T NP Y+ W RQD LI++WLLGSM+  +L++ML CK+A+
Sbjct: 62  ESEPPSKYLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAK 121

Query: 124 EVWKILNARFSSCNMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHED 183
           E+W+ L   FSS  +A+ M  K+KL  +KKGS+ L+EYFLKI   VD+L +  + +S +D
Sbjct: 122 EIWETLQGIFSSRYLAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDD 181

Query: 184 HIMHILARLGPKYDSTVSV 198
           HI++ILA LG  Y S +SV
Sbjct: 182 HILYILAGLGSDYQSMISV 200

[Close]

BLAST of Lag0042055 vs. ExPASy TrEMBL
Match: A0A5D3D5T2 (Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001330 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 6.5e-39
Identity = 89/199 (44.72%), Postives = 132/199 (66.33%), Query Frame = 0


Query: 4   STNKTIPDLSNFSQSSKIE---NPGHKTTSVKLDEENFLLWKLQVLTKLRGYGLEQFLDN 63
           S+  ++  + N   SS I       +K + VKL ++NFLLWK Q+LT L  Y LE FL++
Sbjct: 2   SSTSSLLGVENTEASSPINQIFGSSNKISLVKLSDDNFLLWKFQILTALEAYDLENFLES 61

Query: 64  DSAIPPKSIAST--NAATFEQTLNPDYQYWIRQDSLITTWLLGSMTNSLLSEMLDCKTAR 123
           +S  P K + ST  ++A+  +T NP Y+ W RQD LI++WLLGSM+  +L++ML CK+A+
Sbjct: 62  ESEPPSKYLISTGSSSASATRTPNPTYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAK 121

Query: 124 EVWKILNARFSSCNMARVMDLKSKLETMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHED 183
           E+W  L   FSS  +A+ M  K+KL  +KK S+ L+EYFLKI++ VD+L +  + +S +D
Sbjct: 122 EIWGTLQGIFSSRYLAQAMKFKNKLHNIKKESMPLKEYFLKIQHRVDALASINKPVSSDD 181

Query: 184 HIMHILARLGPKYDSTVSV 198
           HI++ILA LG  Y S +SV
Sbjct: 182 HILYILAGLGSDYQSMISV 200

[Close]

BLAST of Lag0042055 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 66.2 bits (160), Expect = 3.3e-11
Identity = 41/175 (23.43%), Postives = 82/175 (46.86%), Query Frame = 0


Query: 26  HKTTSVKLDEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIASTNAATFEQTLNPDY 85
           H    + ++E N+  W+   LT    + +   +D        ++  TNA           
Sbjct: 19  HIPVMLDIEESNYDAWRELFLTHCLSFDVMGHIDG-------TLLPTNANDVN------- 78

Query: 86  QYWIRQDSLITTWLLGSMT-NSLLSEMLDCKTAREVWKILNARFSSCNMARVMDLKSKLE 145
             W ++D ++   L G++T        +   T+R++W  +  +F +   AR + L S+L 
Sbjct: 79  --WQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELR 138

Query: 146 TMKKGSLKLEEYFLKIKNLVDSLTAAGRKISHEDHIMHILARLGPKYDSTVSVRK 200
           T   G +++ +Y+ K+K L DSL      ++  + +M++L  L PK+D+ ++V K
Sbjct: 139 TKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIK 177

[Close]

BLAST of Lag0042055 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.5 bits (158), Expect = 5.7e-11
Identity = 36/130 (27.69%), Postives = 67/130 (51.54%), Query Frame = 0


Query: 34  DEENFLLWKLQVLTKLRGYGLEQFLDNDSAIPPKSIASTNAATFEQTLNPDYQYWIRQDS 93
           DE+N++ WK++  + LR      F+D     P                +P YQ W + ++
Sbjct: 38  DEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKP-------------DPFSPLYQPWEQCNA 97

Query: 94  LITTWLLGSMTNSLLSEMLDCKTAREVWKILNARFSSCNMARVMDLKSKLETMKKGSLKL 153
           ++  WL+ SMT+ LL  ++  +TA ++W+ L   F  C   ++  L+ +L T+++G   +
Sbjct: 98  MVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQGGDSV 154

Query: 154 EEYFLKIKNL 164
           EEYF K+  +
Sbjct: 158 EEYFGKLSKV 154

The following BLAST results are available for this feature:

BLAST of Lag0042055 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154487.1	3.8e-49	52.91	uncharacterized protein LOC111021757 [Momordica charantia]	[more]
XP_022156747.1	6.2e-44	56.96	uncharacterized protein LOC111023586 [Momordica charantia]	[more]
KAA0048297.1	2.7e-39	45.23	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK10642.1	2.7e-39	45.23	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0067213.1	1.3e-38	44.72	keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]	[more]

BLAST of Lag0042055 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	8.0e-18	29.88	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	5.5e-11	26.83	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of Lag0042055 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DLT9	1.8e-49	52.91	uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6J1DSS1	3.0e-44	56.96	uncharacterized protein LOC111023586 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A5A7U233	1.3e-39	45.23	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CH97	1.3e-39	45.23	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3D5T2	6.5e-39	44.72	Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of Lag0042055 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G34070.1	3.3e-11	23.43	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]
AT1G21280.1	5.7e-11	27.69	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 88..196 e-value: 6.9E-18 score: 64.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 33..196
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 33..196

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0042055.1	Lag0042055.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034641	cellular nitrogen compound metabolic process
biological_process	GO:0071704	organic substance metabolic process