Lag0041691 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0041691
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionHTH myb-type domain-containing protein
Locationchr13: 24110891 .. 24111993 (-)
RNA-Seq ExpressionLag0041691
SyntenyLag0041691
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGACAGTACATAAGATCCAAAACGCCGCGTTTAAGATGGACTCCTCAACTCCATCACTCTTTCCTTCTCGCCATTCAAACCCTTGGTGGCCATCAAAGTATTTTTTTTTTTTTTCTCTCTTTCTCTCTCTAGAATTATTTATTTTAAATTTTTTTTTTTTTTTTTTGCAGAGGCAACTCCCAAGCTTGTGCTTCAGTTGATGGATGTGAAAGGCCTCTCTATATCACATGTTAAGAGCCATCTTCAGGTCTTCACTTCTGTCAACTTTGATTTAGTATTTTTTTTTTATTATTATTTTTCTTTTTTCTTCTTATTATATATATTCTTTGAATTATGCAGATGTATAGGAGTATGAGAGGTGACTTTATTGGAACACATGCAGGTACGTATAAATATTGGTTTGTTTCAGAATTTTCCAATTAGTTTAGAATTAGTAAATTTTGATGTTTATTGTGATGAATTCAATATATAACATTATTCCGTGTATTAATTTTTTCTTCTTTCCCCAAAGTTTTTCCATTCTGTACGGCAATCAATATAGCTCAATATTTTATCTTTATGAAAATATAAAGAGATCTGTTGTTTCTAATAAACTAGTGTGAATCATGTTATATTGAAATACCAAGCAATTCACTAGTTTACTTAAAGATAACCCATTATTTAAAGAAAAACAAAATTCTAGATGTTATGATAAATCTAGTACAATACTATATGAACTTAATTATTGCCAAAACGAGCATAACTCAGCTGTCCCTCAAATGTTGATACATCTCAAAATATATATTAGGTGCATATAATCAACATTTAATCCACCCTAAAAAATCAAAATAGATCAAATATCAAATTACTCACTAGTTCCTCTACATTATATATGTATAATGTATCCTAAGTTTAAATCTTAATTTTGGTTATTTCCAAGAATATATATATATATATATATGTGAATTGGAATTTGACTGTGGGCATGTGTGTGGGTTGCAGAAAGAAGTAGAAAACCAAGTTTTGAAGAAGAAAATCTGAAAGTCTTACATTCATCAATGAGACTTTCTAAGGAATCAAAATCAGAGGGCGTTGGCAGCACTCAACACTCTAGAAGGTAA

mRNA sequence

ATGAGACAGTACATAAGATCCAAAACGCCGCGTTTAAGATGGACTCCTCAACTCCATCACTCTTTCCTTCTCGCCATTCAAACCCTTGGTGGCCATCAAAAGGCAACTCCCAAGCTTGTGCTTCAGTTGATGGATGTGAAAGGCCTCTCTATATCACATGTTAAGAGCCATCTTCAGATGTATAGGAGTATGAGAGGTGACTTTATTGGAACACATGCAGAAAGAAGTAGAAAACCAAGTTTTGAAGAAGAAAATCTGAAAGTCTTACATTCATCAATGAGACTTTCTAAGGAATCAAAATCAGAGGGCGTTGGCAGCACTCAACACTCTAGAAGGTAA

Coding sequence (CDS)

ATGAGACAGTACATAAGATCCAAAACGCCGCGTTTAAGATGGACTCCTCAACTCCATCACTCTTTCCTTCTCGCCATTCAAACCCTTGGTGGCCATCAAAAGGCAACTCCCAAGCTTGTGCTTCAGTTGATGGATGTGAAAGGCCTCTCTATATCACATGTTAAGAGCCATCTTCAGATGTATAGGAGTATGAGAGGTGACTTTATTGGAACACATGCAGAAAGAAGTAGAAAACCAAGTTTTGAAGAAGAAAATCTGAAAGTCTTACATTCATCAATGAGACTTTCTAAGGAATCAAAATCAGAGGGCGTTGGCAGCACTCAACACTCTAGAAGGTAA

Protein sequence

MRQYIRSKTPRLRWTPQLHHSFLLAIQTLGGHQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMRGDFIGTHAERSRKPSFEEENLKVLHSSMRLSKESKSEGVGSTQHSRR
Homology
BLAST of Lag0041691 vs. NCBI nr
Match: XP_022991492.1 (putative Myb family transcription factor At1g14600 [Cucurbita maxima])

HSP 1 Score: 134.0 bits (336), Expect = 7.8e-28
Identity = 63/74 (85.14%), Postives = 71/74 (95.95%), Query Frame = 0

Query: 1  MRQYIRSKTPRLRWTPQLHHSFLLAIQTLGGHQKATPKLVLQLMDVKGLSISHVKSHLQM 60
          +RQY+RSKTPRLRWTPQLH+SFLLAIQ+LGGHQKATPKL+LQLMDVKG+SISHVKSHLQM
Sbjct: 5  VRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLQLMDVKGVSISHVKSHLQM 64

Query: 61 YRSMRGDFIGTHAE 75
          YRSMRG+ +  HAE
Sbjct: 65 YRSMRGEDVRRHAE 78

BLAST of Lag0041691 vs. NCBI nr
Match: XP_023516803.1 (putative Myb family transcription factor At1g14600 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.5 bits (332), Expect = 2.3e-27
Identity = 62/74 (83.78%), Postives = 70/74 (94.59%), Query Frame = 0

Query: 1  MRQYIRSKTPRLRWTPQLHHSFLLAIQTLGGHQKATPKLVLQLMDVKGLSISHVKSHLQM 60
          +RQY+RSKTPRLRWTPQLH+SFLLAIQ+LGGHQKATPKL+LQLMDVKG+SISHVKSHLQM
Sbjct: 5  VRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLQLMDVKGVSISHVKSHLQM 64

Query: 61 YRSMRGDFIGTHAE 75
          YRSMRG+ +  H E
Sbjct: 65 YRSMRGEDVRRHGE 78

BLAST of Lag0041691 vs. NCBI nr
Match: XP_022929947.1 (myb family transcription factor PHL6-like [Cucurbita moschata])

HSP 1 Score: 132.1 bits (331), Expect = 3.0e-27
Identity = 61/74 (82.43%), Postives = 70/74 (94.59%), Query Frame = 0

Query: 1  MRQYIRSKTPRLRWTPQLHHSFLLAIQTLGGHQKATPKLVLQLMDVKGLSISHVKSHLQM 60
          +RQY+RSKTPRLRWTPQLH+SFLLAIQ+LGGHQKATPKL+LQLMDVKG+S+SHVKSHLQM
Sbjct: 5  VRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLQLMDVKGVSVSHVKSHLQM 64

Query: 61 YRSMRGDFIGTHAE 75
          YRSMRG+ +  H E
Sbjct: 65 YRSMRGEDVRRHGE 78

BLAST of Lag0041691 vs. NCBI nr
Match: XP_022158770.1 (putative Myb family transcription factor At1g14600 [Momordica charantia] >XP_022158771.1 putative Myb family transcription factor At1g14600 [Momordica charantia])

HSP 1 Score: 132.1 bits (331), Expect = 3.0e-27
Identity = 68/89 (76.40%), Postives = 74/89 (83.15%), Query Frame = 0

Query: 1   MRQYIRSKTPRLRWTPQLHHSFLLAIQTLGGHQKATPKLVLQLMDVKGLSISHVKSHLQM 60
           +RQY+RSK PRLRWTP+LHHSF+LAIQTLGGHQKATPKLVLQLMDVKGL+ISHVKSHLQM
Sbjct: 14  VRQYVRSKVPRLRWTPELHHSFVLAIQTLGGHQKATPKLVLQLMDVKGLTISHVKSHLQM 73

Query: 61  YRSMRGDFIGTHAERS----RKPSFEEEN 86
           YRSMRGD        S    RK S EEE+
Sbjct: 74  YRSMRGDMGRQDRSSSITLQRKLSLEEED 102

BLAST of Lag0041691 vs. NCBI nr
Match: KAG7032464.1 (putative Myb family transcription factor [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.3 bits (329), Expect = 5.1e-27
Identity = 61/74 (82.43%), Postives = 70/74 (94.59%), Query Frame = 0

Query: 1  MRQYIRSKTPRLRWTPQLHHSFLLAIQTLGGHQKATPKLVLQLMDVKGLSISHVKSHLQM 60
          +RQY+RSKTPRLRWTPQLH+SFLLAIQ+LGGHQKATPKL+L+LMDVKG+SISHVKSHLQM
Sbjct: 5  VRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLELMDVKGVSISHVKSHLQM 64

Query: 61 YRSMRGDFIGTHAE 75
          YRSMRG+ +  H E
Sbjct: 65 YRSMRGEDVRRHGE 78

BLAST of Lag0041691 vs. ExPASy Swiss-Prot
Match: Q700D9 (Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana OX=3702 GN=At1g14600 PE=2 SV=2)

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-21
Identity = 53/93 (56.99%), Postives = 65/93 (69.89%), Query Frame = 0

Query: 1   MRQYIRSKTPRLRWTPQLHHSFLLAIQTLGGHQKATPKLVLQLMDVKGLSISHVKSHLQM 60
           +R Y+RS  PRLRWTP+LH SF+ A+  LGG  KATPKLVL++MDVKGL+ISHVKSHLQM
Sbjct: 15  VRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQM 74

Query: 61  YRSMRGDFIGTHAE-------RSRKPSFEEENL 87
           YR  R   +G   E       R R+   EE++L
Sbjct: 75  YRGSRITLLGKPEESSSPSSRRRRRQDNEEDHL 107

BLAST of Lag0041691 vs. ExPASy Swiss-Prot
Match: A3AWH5 (Myb family transcription factor MOF1 OS=Oryza sativa subsp. japonica OX=39947 GN=MOF1 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.3e-21
Identity = 52/85 (61.18%), Postives = 62/85 (72.94%), Query Frame = 0

Query: 1  MRQYIRSKTPRLRWTPQLHHSFLLAIQTLGGHQKATPKLVLQLMDVKGLSISHVKSHLQM 60
          +RQYIRSK PRLRWT +LH SF+ AI+ LGG  KATPKL+LQLM VKGL+ISHVKSHLQM
Sbjct: 14 VRQYIRSKVPRLRWTGELHCSFVQAIEFLGGQDKATPKLILQLMGVKGLTISHVKSHLQM 73

Query: 61 YRSMRGDFIGTHAERSRKPSFEEEN 86
          YR  R    GT      +P  + ++
Sbjct: 74 YRCSRLGSHGTGRRSEMQPQLQRKH 98

BLAST of Lag0041691 vs. ExPASy Swiss-Prot
Match: A0A0P0X0C0 (Myb family transcription factor MPH1 OS=Oryza sativa subsp. japonica OX=39947 GN=MPH1 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 9.9e-18
Identity = 40/63 (63.49%), Postives = 52/63 (82.54%), Query Frame = 0

Query: 1  MRQYIRSKTPRLRWTPQLHHSFLLAIQTLGGHQKATPKLVLQLMDVKGLSISHVKSHLQM 60
          +RQY RS+ PR+RWT ++H  F+ A++ LGG  +ATPK +LQLM VKG+SISH+KSHLQM
Sbjct: 9  VRQYNRSEVPRMRWTEEMHRQFVEAVECLGGQDEATPKRILQLMGVKGVSISHIKSHLQM 68

Query: 61 YRS 64
          YRS
Sbjct: 69 YRS 71

BLAST of Lag0041691 vs. ExPASy Swiss-Prot
Match: Q93WJ9 (Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.7e-15
Identity = 35/58 (60.34%), Postives = 49/58 (84.48%), Query Frame = 0

Query: 8   KTPRLRWTPQLHHSFLLAIQTLGGHQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMR 66
           + PR+RWT  LH  F+ A++ LGGH++ATPK VL+LMDVK L+++HVKSHLQMYR+++
Sbjct: 218 RAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 275

BLAST of Lag0041691 vs. ExPASy Swiss-Prot
Match: Q9C616 (Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.5e-15
Identity = 35/58 (60.34%), Postives = 49/58 (84.48%), Query Frame = 0

Query: 8   KTPRLRWTPQLHHSFLLAIQTLGGHQKATPKLVLQLMDVKGLSISHVKSHLQMYRSMR 66
           + PR+RWT  LH  F+ A++ LGGH++ATPK VL+LMDVK L+++HVKSHLQMYR+++
Sbjct: 212 RAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 269

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022991492.17.8e-2885.14putative Myb family transcription factor At1g14600 [Cucurbita maxima][more]
XP_023516803.12.3e-2783.78putative Myb family transcription factor At1g14600 [Cucurbita pepo subsp. pepo][more]
XP_022929947.13.0e-2782.43myb family transcription factor PHL6-like [Cucurbita moschata][more]
XP_022158770.13.0e-2776.40putative Myb family transcription factor At1g14600 [Momordica charantia] >XP_022... [more]
KAG7032464.15.1e-2782.43putative Myb family transcription factor [Cucurbita argyrosperma subsp. argyrosp... [more]
Match NameE-valueIdentityDescription
Q700D92.5e-2156.99Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana OX=37... [more]
A3AWH53.3e-2161.18Myb family transcription factor MOF1 OS=Oryza sativa subsp. japonica OX=39947 GN... [more]
A0A0P0X0C09.9e-1863.49Myb family transcription factor MPH1 OS=Oryza sativa subsp. japonica OX=39947 GN... [more]
Q93WJ92.7e-1560.34Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1[more]
Q9C6163.5e-1560.34Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 ... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.10.60coord: 9..65
e-value: 7.9E-25
score: 88.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..112
NoneNo IPR availablePANTHERPTHR31314:SF93OS02G0672300 PROTEINcoord: 2..93
IPR017930Myb domainPFAMPF00249Myb_DNA-bindingcoord: 12..62
e-value: 5.6E-6
score: 26.4
IPR006447Myb domain, plantsTIGRFAMTIGR01557TIGR01557coord: 10..63
e-value: 1.2E-22
score: 78.0
IPR044848PHR1-likePANTHERPTHR31314MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKEcoord: 2..93
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 7..64

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0041691.1Lag0041691.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity