Lag0041690 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0041690
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionmyb family transcription factor PHL6-like
Locationchr13: 24105616 .. 24109048 (-)
RNA-Seq ExpressionLag0041690
SyntenyLag0041690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCAGCGCAGCCAAGGAATATCAGATCATCCTGTCTCACCTTTCTCTCTGTCAATTTCACAGGTCTTTCTCTCTCTCTCTCTCTCTCTAGCTTTTTTAAAAGGGAAATTGATGGAGGGTTGACTATTATTTCTACACCAAACCCTTTTTTTTTCTTGGTTTATAAGTTTGATTTTATAAATTGAAGAGACAACAAAAAAGGAAGCTAAGATAATTGAAATTTGAGTGGATGGAGCCAAATGGTTATTTGTAATATTTTTCTAGGGTGATACTGGTTTAAATCTCATTTTAGTCTATGAACTTTTAAATTTGTTCTATTTTAGCCGTCTTTAAACTTTCAAAACGTTCATTTTGGTCTTTAAAAATTTCAAATTTATTCTATTCTAGTCTACGAACTTTCAAAATGTCTATTTTGATCTCTAAACTTTGAAAAAAATAATCATTTTGGTCATCGTTATGTTATTTTTATATTTCATATCCGTTTATGCCTAATGTTCGTCTTTAATTTATTTGATTTGAAATCATGCTCGTATTAACAATCTAATGCACACACAAAAAGCTATGTCGTTAATTTGTTAAAATTGAAATAAAAGTAAGAACCAAAATAGTTTTTTTCTAAAGTTCAGGGACTAAAATAGACATTTTAAAAGCTTAGGGACTAAAATAATGGAACAAACTTGAAAGTTCAGGACTAAAACGAACATTTTGATAATTCAGGGACCAAAATAGAATAATCCTAAAAGTTTAGAACCAAAATAGGATTTAATTTTTTTCTTTTTTATTGTCTTATACAATTGTTTCCCTAAGGAAAGTAGGCCTTTAAAAAGTTTATATTTCTGCCCTTGTATAAATGGTAATAAAAACAATGAAAATCTTCCTTATAAAAGATACCAAAATTATACACAATTTATTTTTTTAAAAAATAGGAAATAATAACCTACCAACTTAAGTAACTCAACTGACATAAATAGCGTTTCTTTTGGGCTCCACCACTACATTTGTGATTCTATATTCTAAAATAAGTTTTAGAAATAAAAATCCTAACTAAAATGAATATACAACTAACCATAATTAAACTTTATAATATTTTTAAATTACACAAAATATATACAATTTCCCAATAAATACACCATAAAAGATGAACAATTTTTTTAATTAATTAATTAATTATTTTTAGTTCAACAACATTTGTGGTGGATGCATTCAAATCCATGACCTTTTAATCATAAACACACCTTTTATGCTAATTGAACTATACTGTGTAATAAAAAAATGGATTATATATAGATTAATATTTTATATAAATATTTAAAGATAAATTTATACAAACTTTTACCTTGAATAAAAAATTTAGAGAAAAGAAAAGATAAATTCGAGGTTGAAAATTTTCAAAAGTAAGCCAAAATTTTATATTTGAAATATATTGTACATACAATCTTAATTTTAAACATTAAAGTGAGCAATTTAGGATAGAATTTAATACCTGTAATTTTAAAATTAGAATTTTGTCCTTATGGTTTGATAAAACTTCATTAATTATCCGTATCGATGGAAGTAACTAACGAATTGAGTACGTGGATATTGAAAGTCACCAACGGATTGAGTATGTGGTAGAATAAGAACAAAATTCCAACGGGTTGAGTATGTGATAAGGACTGCTTAATAGGTTTTATCTCACCATAATGACAAAATTCTAATTTTAAAATCATAGGGACTAAATACTAACTTTCACCAAATTATATAGGGGCCAAATTTATAATTTAATTTAGTTTTTTTTACAAAACTTACCAATCAATGAACTTTTATATTCGTGTTCGTATCATAAAGGAAAAAACTTATTAAGATCTTTAAGTTCTAAGAATTTCAAATAGATCTTTAAACTTTCAATTTCACGTGTTTTTTCATATCCCAAGTTAAATTTTGTTTTGTTACACAGATTTTGAGAAATTTGTTAGTGCAGGAGAATATTAATATAACATGGTCTTGAAACTGGAGAATGATAAGCTATTTTGTATTTTTGCCAATGTCCCATCTCATTTTTCCACTTTTTTTAGACCAAGATTCAGAAATTCTCTCAACCCTTTTCCTTATCAGCCATTTATAAAGCAGTATTTGAAAAGAAATGATTGTGATGTGTATTTGCAATTTTTATTGTTTTCTAATATTGTTTTTTGAAACTTATTTGTAAAATATTTCTAATCATTATTTCAAAAATATTATAGATTTTAATAATGTTGAGAGTAAGTCATCTCTTCACAAGATAACTTTGTGATAGAATCTTACTATAAAAAAAAAAAAAAAAAAAAAAAAAACTTTGTGATAGAATAAAAAAATTTTACTTAATTATTAAAAGAGATAAAGATTGTTAATGTGAGAGAGTGAAGAGAGGGATTAATAAGAGATAATCTTTCATTAATCTATTTTCTTGTTCTCCCTCTCAATAATCTCTCTTGGTATCTCTCTCCTTCCCTCCCTAGTCCCTACCCCTCCTTTTCTCTATCTCATAAAAAATATAATTTTTTTATAAATAATTATCAAAAAATAAAATTTGATAATTGAATTACTCATATTTGTAAAATTAAAAAAAAATGTAGTTTTCCCAAACTTGTTTTTGTTTTGGGAATTTGGTTAGAAATTCAAATGTAGATTTAACAAGGATGAAAATCATTTTAGAAAAACTGGAAGAAAACAAGCATAATTTTCAAAAACCAAATACTAAAAACTAAAGTCTCGTTTGATAACAATTCAATTTTTGGTTTTTTGTTTTCAAAAATTTTATTTGTTTTCTTCTAATTTCCTTGAAATGATCTTCATCTTTGTTAAGGAACACATGAATTATTAGCCAAATTCCAAAAACAAAGTAATTTTCAAAATTTGACATGATTTTAAAAACTTTGAAAGAATGTAGATAACAAAAAATATATATATATATATATTGGAAGGAGCACTGTTTATAAACTTAATTTTTTTAAATATAAACAAAAATCAAATAGTTATTAAACGAGACTAAATAGTTATTAAGTGGCCTAAATATTAAGAGATTTTGAGAATTGGCGGTACAATGCAAGCTCTACAAATAATATAATCCCTCACAAAATGATTTCTTCTGGTTTGACCACAGCTGACAAAGCAAGAGGAACAAAAGCCTAACCCCATGCCCATGCGACGTCCTAAAGACAATAGGGATGGGGAAAAGGTAGTTGAAGATCACAACAAACAGGACCAAGAAGGCCAAGCCAAGGATTTTGAACTGTCATTATCCCTATCCCTACACCATCCTTCTCTACAACCAACTAACTCCGCCGTTGTTCCGGCCCCCGACATCGTGTTATCGTCCTCTTATTCGAGCGCTCCTAACAAAAATTCCCCACTTCAACACGATGTCGACTTAGACTTATCGATATCACTTTGCCACAACTACCAAGGATAA

mRNA sequence

ATGGAGCAGCGCAGCCAAGGAATATCAGATCATCCTGTCTCACCTTTCTCTCTGTCAATTTCACAGCTGACAAAGCAAGAGGAACAAAAGCCTAACCCCATGCCCATGCGACGTCCTAAAGACAATAGGGATGGGGAAAAGGTAGTTGAAGATCACAACAAACAGGACCAAGAAGGCCAAGCCAAGGATTTTGAACTGTCATTATCCCTATCCCTACACCATCCTTCTCTACAACCAACTAACTCCGCCGTTGTTCCGGCCCCCGACATCGTGTTATCGTCCTCTTATTCGAGCGCTCCTAACAAAAATTCCCCACTTCAACACGATGTCGACTTAGACTTATCGATATCACTTTGCCACAACTACCAAGGATAA

Coding sequence (CDS)

ATGGAGCAGCGCAGCCAAGGAATATCAGATCATCCTGTCTCACCTTTCTCTCTGTCAATTTCACAGCTGACAAAGCAAGAGGAACAAAAGCCTAACCCCATGCCCATGCGACGTCCTAAAGACAATAGGGATGGGGAAAAGGTAGTTGAAGATCACAACAAACAGGACCAAGAAGGCCAAGCCAAGGATTTTGAACTGTCATTATCCCTATCCCTACACCATCCTTCTCTACAACCAACTAACTCCGCCGTTGTTCCGGCCCCCGACATCGTGTTATCGTCCTCTTATTCGAGCGCTCCTAACAAAAATTCCCCACTTCAACACGATGTCGACTTAGACTTATCGATATCACTTTGCCACAACTACCAAGGATAA

Protein sequence

MEQRSQGISDHPVSPFSLSISQLTKQEEQKPNPMPMRRPKDNRDGEKVVEDHNKQDQEGQAKDFELSLSLSLHHPSLQPTNSAVVPAPDIVLSSSYSSAPNKNSPLQHDVDLDLSISLCHNYQG
Homology
[Close]
BLAST of Lag0041690 vs. NCBI nr
Match: KAG7032464.1 (putative Myb family transcription factor [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-14
Identity = 68/117 (58.12%), Postives = 81/117 (69.23%), Query Frame = 0 

Query: 11  HPVSPFSLSISQLTKQEEQKPNPMPMRRPKDNRDGEKVVEDHNKQDQ-EGQAKDFELSLS 70
           H  SPFSL +SQLT +EEQKP   PM RPK NRDG +VV+   KQDQ EGQ KDF+  LS
Sbjct: 127 HATSPFSLPLSQLTNEEEQKPK--PMGRPKHNRDGGRVVK---KQDQEEGQPKDFD-QLS 186

Query: 71  LSLHHPSLQPTNSAVVPAPDIVLSSSYSSAPNKNSPLQ--HDVDLDLSISLCHNYQG 125
           LSL   SLQPTN    P P   LSSS S++ +K+  +Q   ++DLDLSISLC NY+G
Sbjct: 187 LSL---SLQPTNP---PIPS--LSSSNSTSIDKSLWIQKCEEIDLDLSISLCPNYRG 229

[Close]
BLAST of Lag0041690 vs. NCBI nr
Match: XP_022929947.1 (myb family transcription factor PHL6-like [Cucurbita moschata])

HSP 1 Score: 89.7 bits (221), Expect = 1.9e-14
Identity = 68/117 (58.12%), Postives = 80/117 (68.38%), Query Frame = 0 

Query: 11  HPVSPFSLSISQLTKQEEQKPNPMPMRRPKDNRDGEKVVEDHNKQDQ-EGQAKDFELSLS 70
           H  SPFSL +SQLT +EEQK    PM RPK NRDG +VV+   KQDQ EGQ KDF+  LS
Sbjct: 127 HATSPFSLPLSQLTNEEEQKSK--PMGRPKHNRDGGRVVK---KQDQEEGQPKDFD-QLS 186

Query: 71  LSLHHPSLQPTNSAVVPAPDIVLSSSYSSAPNKNSPLQ--HDVDLDLSISLCHNYQG 125
           LSL   SLQPTN    P P   LSSS SS+ +K+  +Q   ++DLDLSISLC NY+G
Sbjct: 187 LSL---SLQPTNP---PIPS--LSSSSSSSIHKSLSIQKCEEIDLDLSISLCPNYRG 229

[Close]
BLAST of Lag0041690 vs. NCBI nr
Match: KAG6601716.1 (putative Myb family transcription factor, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.0 bits (219), Expect = 3.2e-14
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 0 

Query: 11  HPVSPFSLSISQLTKQEEQKPNPMPMRRPKDNRDGEKVVEDHNKQDQ-EGQAKDFELSLS 70
           H  SPFSL +SQLT +EEQKP   PM RPK NRDG +VV+   KQDQ EGQ KDF+  LS
Sbjct: 127 HATSPFSLPLSQLTNEEEQKPK--PMGRPKHNRDGGRVVK---KQDQEEGQPKDFD-QLS 186

Query: 71  LSLHHPSLQPTNSAVVPAPDIVLSSSYSSAPNKNSPLQ--HDVDLDLSISLCHNYQG 125
           LSL   SLQPTN      P I   SS S++ +K+  +Q   ++DLDLSISLC NY+G
Sbjct: 187 LSL---SLQPTN------PPISSLSSSSTSIDKSLWIQKCEEIDLDLSISLCPNYRG 228

[Close]
BLAST of Lag0041690 vs. NCBI nr
Match: XP_022991492.1 (putative Myb family transcription factor At1g14600 [Cucurbita maxima])

HSP 1 Score: 86.7 bits (213), Expect = 1.6e-13
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 0 

Query: 11  HPVSPFSLSISQLTKQEEQKPNPMPMRRPKDNRDGEKVVEDHNKQD-QEGQAKDFELSLS 70
           H  SPFSL +SQLT +EEQK    PM RPK  RDG +VV+   KQD +EGQ KDF+  LS
Sbjct: 127 HATSPFSLPLSQLTNEEEQKHK--PMGRPKHTRDGGRVVK---KQDREEGQHKDFD-QLS 186

Query: 71  LSLHHPSLQPTNSAVVPAPDIVLSSSYSSAPNKNSPLQ--HDVDLDLSISLCHNYQG 125
           LSL   SLQPTN    P P   LSSS  ++ +K+ P+Q   ++DLDLSISLC NYQG
Sbjct: 187 LSL---SLQPTNP---PIPS--LSSSSLTSLDKSLPIQKHQEIDLDLSISLCPNYQG 229

[Close]
BLAST of Lag0041690 vs. NCBI nr
Match: XP_023516803.1 (putative Myb family transcription factor At1g14600 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-12
Identity = 64/114 (56.14%), Postives = 79/114 (69.30%), Query Frame = 0 

Query: 14  SPFSLSISQLTKQEEQKPNPMPMRRPKDNRDGEKVVEDHNKQDQ-EGQAKDFELSLSLSL 73
           SPFSL +SQLT +EEQKP   PM RPK  RDG +VV+   KQDQ EGQ +D++  LSLSL
Sbjct: 131 SPFSLPLSQLTNEEEQKPR--PMGRPKHTRDGGRVVK---KQDQEEGQPEDYD-QLSLSL 190

Query: 74  HHPSLQPTNSAVVPAPDIVLSSSYSSAPNKNSPLQ--HDVDLDLSISLCHNYQG 125
              SLQPTN    P P   LSSS SS+ +K+  +Q   +++LDLSISLC NY+G
Sbjct: 191 ---SLQPTNP---PIPS--LSSSSSSSIDKSLSIQKWEEINLDLSISLCPNYRG 230

The following BLAST results are available for this feature:
BLAST of Lag0041690 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7032464.11.1e-1458.12putative Myb family transcription factor [Cucurbita argyrosperma subsp. argyrosp... [more]
XP_022929947.11.9e-1458.12myb family transcription factor PHL6-like [Cucurbita moschata][more]
KAG6601716.13.2e-1456.41putative Myb family transcription factor, partial [Cucurbita argyrosperma subsp.... [more]
XP_022991492.11.6e-1356.41putative Myb family transcription factor At1g14600 [Cucurbita maxima][more]
XP_023516803.11.7e-1256.14putative Myb family transcription factor At1g14600 [Cucurbita pepo subsp. pepo][more]
BLAST of Lag0041690 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..61
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0041690.1Lag0041690.1mRNA