Lag0041677 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0041677
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionpolyadenylate-binding protein-interacting protein 4-like
Locationchr13: 23694155 .. 23697652 (-)
RNA-Seq ExpressionLag0041677
SyntenyLag0041677
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGAGTTTCTCCAGTCGATTGAGGTCGTATTGGAGGCGGCGGAAGGCGTGGGTGAGGATCTGGTGGAGCGAGTTTAGAGTATTTTAAGCACGATCGTGACGAACGACTAGACTTGTATGGACAAGATGGTGGAATCGAGGAGTAGTTTGGGGAATACCTATCAACGCCACTATTGAATACGAGGAAGATCGTTGAGAATGGTCACAAACTCGCCATCACGTGGTGGAAGAAGCAACGGTAGAAGGGAGGATATTTTTTTGGCAACAACGCAAAACAGAAGCCACAGAACACGCTGGTCTCAGCAAACTTGCATTATTATATAGAACTAACTAAGCAGAGAGAGGTGGGAGTTTGAAAGAATAACATGCCAGGTATATTCAATCCTTCACATAGAGTTAAATATACAATAGGTATCGGGTACAATGACTTCTATTAAAACTTCTTTGCTTTTTTTTTTTTAATTTTTTTATTTTATTTTGGCATCTCAGGATGCAGAATGAAAATGGTGAAGCACAGTATCCAAGGTCATCCTTTGTTGTCAATTGAACTAGTAATTCTCTTTGTTTATTTGTCATAGAAGTGTCTCTGTTCGTTGGTCTATTTTCAATAGGCTATAATCATTTAAATATAACATCAATGTAGATTATGTTTGTAGGGGAAATATTATTGTTTTGTTCATGCAGAAGGTTTGGGATTATGCTCTTCCACCACTATTCTTATGATTGATATTTGGGATTATGCTCTTAATTCTTTAGTTTAATTGTCAATAGATTTGATAACGTAACTAGGCATGGAGGGCTTAGGAAGCTAACTTATTCAGTTTTATACTTTATTTTTATATTTGCCGTTTTATTTTGTATAGGGGTTGTTTGTTTCAAATTTTCTGCTCTACATCTAAAATTTCGCAAGTGAAAGACATAGAAGAGAAAATGAATTGTTTTTCATTCTCTAGTTTATGTATTTGGAGTTAGGTTGAGTTGATAACACCTGATGTGGCTGACTTTCGATTAGCTTGTTTGAAGTTAAATAAATTGTATGAAGACTCTTAGGATCATTTCTTGTTTCTGGAATGAGTAGAAAATTTTCTAGTTTAAGTTAATTTATATGGTAACCTTGTTGTTGTTTGCCCATGGATCAGTGGTTTTGATTATTTTGCTTTTCTAAATTCATTACTGACTTGAAGAATGTAAAACCATTCTAATTTTTTTTTACGTATGATTTAACGATTTACAGGTTCTTTCTCTCTTTTTGTTTCTGGGTCTTCCTCTGTTTTTCCCCTTCTCTTATCAATCTCTGTTGACTTGAGAATTTTTTTTTTCCAAGACTTAGGGCTAGGGTTTACATTCAAGAAAGCTAAAGATGCAGCAACCACCGCAAATGATGCCCATGATGCCTTCGTTTCCCCCCACCAATATCACCATCGAGCAGATTCAAAAGGCAAGCTCTTTCTCTTTCTTCTTTACTTTTTACTCAAACACCTGTATTTGCACATATGGTAGTGTAGTAATGACTTCTCCTTGATTTGATGGAGCATTGTTTATGGCCCTGGATGTGATTTTGAAAGAAAAATTCTTTTGTTCTTGATGAGTTATTAGCTTTTACATGAATGGCTCCTTTAATGGCTAGATATCTGCTTGCAAGAACCATGTAAAATGATTTAATTTATTTTAATTTAAATCTAGGTCATATTGGGCTATTTCAAATGTACAGGAAGTTCTACTTCCAGATGGTAGTTTTTCCAAAAGTTTGGCTAATTGTGATAAGAAAGCCATGGCCAATGATCCCACTTTGTTGCTTCCAGTGACAGAGGCCAAGACATGTATGGAGTCATTCAAGTAAGGGAGTCAGATTAATCAAACAAGGTAATAGTTGTTTCTCACGAAGCATGATTGTTGTTGGAAGATTGTTTCCAAGGTCACTCTTGGTACAAATGTAACCTTAATTACAACGTGAAAGAAAATTTGAGAAGAACAAAGTAACTTACCAAATAAGTATGGTAATCTATGTTAAGGAACATTGTTAATTTAGCCTCTTATTTAAAATTAGAAATAAGGGATTTGTCCTAAAAGAAGTGGCTTTCTGTGGTTGGGAAGGTTATGTTGTCTTCAGAATGACCATTTTTCATCTTGATTTTACTTGGAAAGACTATCTCGTTCTCTTGTACTTGGTTTTACATATATACTAGACAGATTCTTGCAATTCTAAATCAGTTACATGAAAGTTGCTTCAGGAAATTATCATTTATTGTCTTCAGAATGACCTTCTTGTTTGGTCTAAATACAGTTGTGGGACACTTACTAAGGGATGTCAAGGATACCACCATTAGTCCACTTGCTAATGAGGTCTAATTTCTTACCATTACTTGTCTTGCATTGCAGTAATCTCCAATCAAATTTCTTTTACTCAAACTGTTTACTTAAATTTTGTGATTGACTTGATGTATTAAGCTTCAACTTTTAGATGACAGCATTAGGTCACAAAGGCATTCACTAATATAAATGATATTTTATAGGTTACAGGAAAATTTACTTCTTTAAAAGGCTTGGATGCACAACTATATGAGACTTGTGGCTACCTTGATCTTTTTATTGATGAGGAAGCTTCCATTAAATCATGAGATTCTTTACCATTTACAAGTACCATTTTCTCTACCCTTTTTCCGTGGTTTTTTTTTTAATACATCTCGCTGCTTGATATTGATTTACCTAGGTGTGTGTGCGTTATACTATGTATTTGAGTACATCAATCTTAGACATGGGTTAACATTGATAAGTTCAAAAAAAAAAAAAAAAGTTTTAGTTTTTATAAGTGTAGTTTCATTGAGTTGTAATTATAACTTTAGTTCCACTCATTTTCTATTGAGTTGTTGTGTTTATGTGGTTCATTATGTTGTTGCATTTAGTTGTTTTAACGATTTAGTTGTTGACATTGAAACTGAGAAATTAGAACTATGGTAAGGTTAGTTTCTTCTTAGTCATACTTTAAGTTTTCTATTGATTTCAGTTTTATGTTATAATACTTCTGATCTGTTTATTTAGATTTCCAAATGCATAAAGGCAAGCATGAGGGTGAGAATATTAGTTGTCTTAAACAAGGATTGCTTTTATGTACAGAAGATGTATGCATGATTTGTAGATCTTATGAACTCCACAAGATCTCCCGAAACTTGTTTGGGGCAATTGGCTAGAATCTTGATCGATATTTTCTTTTTCTGTTTTTTATAGTTGCTTATCAGAAATTTGTCTGTTAGAATGATTTAGATTTTAAAATGTTAGATTGCTAATGCTGGCAGGAAAATGTGCCAATCGGTTGCTTGCAACATCTGGCTTACCTCTGATTGCAAGACAGATGAAGGTGCAACTTTTGATAATTTTTTTCCAGCTTATTTCGTTTTTTGAACAATAAGTATTTACAAACTGCTTAATTTATCCTGTTTATTCTTGGTTTGTAGAGGTTAGAATTGAGTTCTATATGGGCCCTCCTTGCAGCATTTGA

mRNA sequence

ATGTGGAGTTTCTCCAGTCGATTGAGGTCGTATTGGAGGCGGCGGAAGGCGTGGGTGAGGATCTGGTGGAGCGAGATGCAGAATGAAAATGGTGAAGCACAGTATCCAAGGTCATATTGGGCTATTTCAAATGTACAGGAAGTTCTACTTCCAGATGGTAGTTTTTCCAAAAGTTTGGCTAATTGTGATAAGAAAGCCATGGCCAATGATCCCACTTTGTTGCTTCCAGTGACAGAGGCCAAGACATGTATGGAGTCATTCAAAATGACCTTCTTGTTTGGTCTAAATACAGTTGTGGGACACTTACTAAGGGATGTCAAGGATACCACCATTAGTCCACTTGCTAATGAGATTGCTAATGCTGGCAGGAAAATGTGCCAATCGGTTGCTTGCAACATCTGGCTTACCTCTGATTGCAAGACAGATGAAGAGGTTAGAATTGAGTTCTATATGGGCCCTCCTTGCAGCATTTGA

Coding sequence (CDS)

ATGTGGAGTTTCTCCAGTCGATTGAGGTCGTATTGGAGGCGGCGGAAGGCGTGGGTGAGGATCTGGTGGAGCGAGATGCAGAATGAAAATGGTGAAGCACAGTATCCAAGGTCATATTGGGCTATTTCAAATGTACAGGAAGTTCTACTTCCAGATGGTAGTTTTTCCAAAAGTTTGGCTAATTGTGATAAGAAAGCCATGGCCAATGATCCCACTTTGTTGCTTCCAGTGACAGAGGCCAAGACATGTATGGAGTCATTCAAAATGACCTTCTTGTTTGGTCTAAATACAGTTGTGGGACACTTACTAAGGGATGTCAAGGATACCACCATTAGTCCACTTGCTAATGAGATTGCTAATGCTGGCAGGAAAATGTGCCAATCGGTTGCTTGCAACATCTGGCTTACCTCTGATTGCAAGACAGATGAAGAGGTTAGAATTGAGTTCTATATGGGCCCTCCTTGCAGCATTTGA

Protein sequence

MWSFSSRLRSYWRRRKAWVRIWWSEMQNENGEAQYPRSYWAISNVQEVLLPDGSFSKSLANCDKKAMANDPTLLLPVTEAKTCMESFKMTFLFGLNTVVGHLLRDVKDTTISPLANEIANAGRKMCQSVACNIWLTSDCKTDEEVRIEFYMGPPCSI
Homology
[Close]
BLAST of Lag0041677 vs. NCBI nr
Match: XP_022943019.1 (polyadenylate-binding protein-interacting protein 4-like [Cucurbita moschata])

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-08
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 47  EVLLPDGSFSKSLANCDKKAMANDPTLLLPVTEAKTCMESFK 89
           EVLLP GSFSKSLA CD ++M NDPT LLP TE KTCMESFK
Sbjct: 99  EVLLPAGSFSKSLAVCDNESMVNDPTSLLPATETKTCMESFK 140

[Close]
BLAST of Lag0041677 vs. NCBI nr
Match: XP_022976186.1 (polyadenylate-binding protein-interacting protein 4-like [Cucurbita maxima])

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-08
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 47  EVLLPDGSFSKSLANCDKKAMANDPTLLLPVTEAKTCMESFK 89
           EVLLP GSFSKSLA CD ++M NDPT LLP TE KTCMESFK
Sbjct: 99  EVLLPAGSFSKSLAVCDNESMVNDPTSLLPATETKTCMESFK 140

[Close]
BLAST of Lag0041677 vs. NCBI nr
Match: KAG7031406.1 (Polyadenylate-binding protein-interacting protein 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 68.9 bits (167), Expect = 4.3e-08
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 47  EVLLPDGSFSKSLANCDKKAMANDPTLLLPVTEAKTCMESFK 89
           EVLLP GSFSKS+A CD ++M NDPT LLP TE KTCMESFK
Sbjct: 99  EVLLPAGSFSKSMAVCDNESMVNDPTSLLPATETKTCMESFK 140

[Close]
BLAST of Lag0041677 vs. NCBI nr
Match: KAG6600769.1 (Polyadenylate-binding protein-interacting protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.9 bits (167), Expect = 4.3e-08
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 47  EVLLPDGSFSKSLANCDKKAMANDPTLLLPVTEAKTCMESFK 89
           EVLLP GSFSKS+A CD ++M NDPT LLP TE KTCMESFK
Sbjct: 99  EVLLPAGSFSKSMAVCDNESMVNDPTSLLPATETKTCMESFK 140

[Close]
BLAST of Lag0041677 vs. NCBI nr
Match: XP_023516964.1 (polyadenylate-binding protein-interacting protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.9 bits (167), Expect = 4.3e-08
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 47  EVLLPDGSFSKSLANCDKKAMANDPTLLLPVTEAKTCMESFK 89
           EVLLP GSFSKS+A CD ++M NDPT LLP TE KTCMESFK
Sbjct: 99  EVLLPAGSFSKSMAVCDNESMVNDPTSLLPATETKTCMESFK 140

The following BLAST results are available for this feature:
BLAST of Lag0041677 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022943019.12.5e-0878.57polyadenylate-binding protein-interacting protein 4-like [Cucurbita moschata][more]
XP_022976186.12.5e-0878.57polyadenylate-binding protein-interacting protein 4-like [Cucurbita maxima][more]
KAG7031406.14.3e-0876.19Polyadenylate-binding protein-interacting protein 4 [Cucurbita argyrosperma subs... [more]
KAG6600769.14.3e-0876.19Polyadenylate-binding protein-interacting protein 4, partial [Cucurbita argyrosp... [more]
XP_023516964.14.3e-0876.19polyadenylate-binding protein-interacting protein 4-like [Cucurbita pepo subsp. ... [more]
BLAST of Lag0041677 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0041677.1Lag0041677.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034063 stress granule assembly
cellular_component GO:0010494 cytoplasmic stress granule
molecular_function GO:0003723 RNA binding