Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGTACCAAGGTATGACATTGAGAAATTTTATGGCAAGGGAGATTTTGATCCGTGGAAAGCAAAGATCAAAGCCATTCTTGGACAACAAAAGACATTAAAGGCTATTCAAGACCCAAAAGAAGTCCCAACCACGACGACTCAAGACAAAAAGGACAATATGCAAGAAGCAACATATAGAACATTGATTTTGAACCTTAGCAACAATGTTCTTAGACAAGTGTTGGATCAAGACACTGCCTACAAGATTTGGACGAAGCTACATGAGTTATATCTCACTAAAGATCTTCCCAACAAAGCATATTTGAGAGAAAGATTTTGTACATACAAGATGGATCCAAGTAAGTCTATGACTGATAATCTTGATGATTTTATGAAGCTTTGGTATGAATTCAAGACTATTGGAGATAAGATTGGAGATGAAAATGAGGCTTTGATCTTATTGAATTCACTACCAGAAAATTACAGAGAAGTTAAAGTAGCCTTGAAGTATGGAAGAGAAAAAAAATAACCACCGATGAAATTGTATCTGCCGTTCGAAGAAAAGAGTTGGAACTTCAAACTCAAAACAAAGAGATTTCTAATTCATAGGGTCTCTTTTCTAAGGAGAAAAACAAACAAAACTGGAAAGACAACAATAACCAAGGTGATGATGACAAAGCTGGGAAGTCCAAAATACACTGTAATTTCTATCTTAAAGATGGACATCTTAAGAAAAACTGTTTTTTTTTTTCTTAAAAGAAAGCAGAATCAAAAGAGCAAGAAGGGCAAACCAGCCGAAGCATCAGTGGGAGAGAATTCTCTCACTTATTCTGATGCCTTAGCAACTTCTAATTAG
mRNA sequence
ATGGCAGTACCAAGGTATGACATTGAGAAATTTTATGGCAAGGGAGATTTTGATCCGTGGAAAGCAAAGATCAAAGCCATTCTTGGACAACAAAAGACATTAAAGGCTATTCAAGACCCAAAAGAAGTCCCAACCACGACGACTCAAGACAAAAAGGACAATATGCAAGAAGCAACATATAGAACATTGATTTTGAACCTTAGCAACAATGTTCTTAGACAAGTGTTGGATCAAGACACTGCCTACAAGATTTGGACGAAGCTACATGAGTTATATCTCACTAAAGATCTTCCCAACAAAGCATATTTGAGAGAAAGATTTTGTACATACAAGATGGATCCAAGTAAGTCTATGACTGATAATCTTGATGATTTTATGAAGCTTTGGTATGAATTCAAGACTATTGGAGATAAGATTGGAGATGAAAATGAGGCTTTGATCTTATTGAATTCACTACCAGAAAATTACAGAGAAGTTAAAGTAGCCTTGAAAAAGCAGAATCAAAAGAGCAAGAAGGGCAAACCAGCCGAAGCATCAGTGGGAGAGAATTCTCTCACTTATTCTGATGCCTTAGCAACTTCTAATTAG
Coding sequence (CDS)
ATGGCAGTACCAAGGTATGACATTGAGAAATTTTATGGCAAGGGAGATTTTGATCCGTGGAAAGCAAAGATCAAAGCCATTCTTGGACAACAAAAGACATTAAAGGCTATTCAAGACCCAAAAGAAGTCCCAACCACGACGACTCAAGACAAAAAGGACAATATGCAAGAAGCAACATATAGAACATTGATTTTGAACCTTAGCAACAATGTTCTTAGACAAGTGTTGGATCAAGACACTGCCTACAAGATTTGGACGAAGCTACATGAGTTATATCTCACTAAAGATCTTCCCAACAAAGCATATTTGAGAGAAAGATTTTGTACATACAAGATGGATCCAAGTAAGTCTATGACTGATAATCTTGATGATTTTATGAAGCTTTGGTATGAATTCAAGACTATTGGAGATAAGATTGGAGATGAAAATGAGGCTTTGATCTTATTGAATTCACTACCAGAAAATTACAGAGAAGTTAAAGTAGCCTTGAAAAAGCAGAATCAAAAGAGCAAGAAGGGCAAACCAGCCGAAGCATCAGTGGGAGAGAATTCTCTCACTTATTCTGATGCCTTAGCAACTTCTAATTAG
Protein sequence
MAVPRYDIEKFYGKGDFDPWKAKIKAILGQQKTLKAIQDPKEVPTTTTQDKKDNMQEATYRTLILNLSNNVLRQVLDQDTAYKIWTKLHELYLTKDLPNKAYLRERFCTYKMDPSKSMTDNLDDFMKLWYEFKTIGDKIGDENEALILLNSLPENYREVKVALKKQNQKSKKGKPAEASVGENSLTYSDALATSN
Homology
BLAST of Lag0041626 vs. NCBI nr
Match:
XP_038885928.1 (uncharacterized protein LOC120076236 [Benincasa hispida])
HSP 1 Score: 199.9 bits (507), Expect = 2.0e-47
Identity = 112/262 (42.75%), Postives = 150/262 (57.25%), Query Frame = 0
Query: 1 MAVPRYDIEKFYGKGDFDPWKAKIKAILGQQKTLKAIQDPKEVPTTTTQDKKDNMQEATY 60
M RY+IEKF K DF+ WKAKIK +L +QK L AI DP + P + +K+ ++ Y
Sbjct: 1 MTTTRYEIEKFEAKTDFELWKAKIKVVLRKQKALLAITDPAKYPKILFKAEKETIESNAY 60
Query: 61 RTLILNLSNNVLRQVLDQDTAYKIWTKLHELYLTKDLPNKAYLRERFCTYKMDPSKSMTD 120
T++LN+ ++VLRQ++D+ TAY +W KL+++YL KDLPNKA+LRERF TYKMDP+KS+TD
Sbjct: 61 GTIVLNVIDSVLRQIVDRPTAYALWNKLNDIYLNKDLPNKAFLRERFFTYKMDPAKSLTD 120
Query: 121 NLDDFMKLWYEFKTIGDKIGDENEALILLNSLPENYREVKVALK---------------- 180
NL++F L +F++IGD IG+ENEA ILLNSLPE +++VK ALK
Sbjct: 121 NLNEFKSLSSDFRSIGDNIGEENEAFILLNSLPETFKDVKTALKYGRERITTYAIISAVS 180
Query: 181 ----------------------------------------------------KQNQKSKK 195
K NQ++K
Sbjct: 181 VKELELQMTKKDQPRGEGFFPKGNNKTMGRANRTMEMCIRDSMKKDCYALKRKLNQQNKG 240
BLAST of Lag0041626 vs. NCBI nr
Match:
XP_038887098.1 (uncharacterized protein LOC120077280 [Benincasa hispida])
HSP 1 Score: 198.7 bits (504), Expect = 4.5e-47
Identity = 95/169 (56.21%), Postives = 130/169 (76.92%), Query Frame = 0
Query: 1 MAVPRYDIEKFYGKGDFDPWKAKIKAILGQQKTLKAIQDPKEVPTTTTQDKKDNMQEATY 60
MA +Y+IEKF K DF+ KAKIKA+LGQQK L AI DP + P T ++ +K+ ++ Y
Sbjct: 1 MATTKYEIEKFDEKIDFELRKAKIKAVLGQQKALLAITDPSKYPETLSEAEKETIESNAY 60
Query: 61 RTLILNLSNNVLRQVLDQDTAYKIWTKLHELYLTKDLPNKAYLRERFCTYKMDPSKSMTD 120
T+ILN++++VLRQ++DQ T Y +W KL+E+YL KD PNK +LRERF TYKMDP+KS+TD
Sbjct: 61 GTIILNVTDSVLRQIMDQPTVYALWNKLNEIYLNKDFPNKNFLRERFFTYKMDPTKSLTD 120
Query: 121 NLDDFMKLWYEFKTIGDKIGDENEALILLNSLPENYREVKVALKKQNQK 170
NL++F +L EF++IGD IG+ENEA IL NSLPE +++VK ALK ++
Sbjct: 121 NLNEFKRLSSEFRSIGDNIGEENEAFILFNSLPETFKDVKTALKYSRKR 169
BLAST of Lag0041626 vs. NCBI nr
Match:
XP_038880370.1 (uncharacterized protein LOC120072018 [Benincasa hispida])
HSP 1 Score: 195.3 bits (495), Expect = 5.0e-46
Identity = 95/164 (57.93%), Postives = 129/164 (78.66%), Query Frame = 0
Query: 1 MAVPRYDIEKFYGKGDFDPWKAKIKAILGQQKTLKAIQDPKEVPTTTTQDKKDNMQEATY 60
MA RY+IEKF GK DF+ KAKIKA+LGQQKTL AI DP + P T ++ K+ ++ Y
Sbjct: 1 MATIRYEIEKFDGKIDFELQKAKIKAVLGQQKTLLAITDPTKYPETLSEADKETIELNAY 60
Query: 61 RTLILNLSNNVLRQVLDQDTAYKIWTKLHELYLTKDLPNKAYLRERFCTYKMDPSKSMTD 120
T+ILN+++++LRQ++DQ TAY +W KL+E+YL KDLPNKA+ RERF TYK+D +KS+TD
Sbjct: 61 GTIILNVTDSILRQIVDQPTAYALWNKLNEIYLNKDLPNKAFFRERFFTYKIDAAKSLTD 120
Query: 121 NLDDFMKLWYEFKTIGDKIGDENEALILLNSLPENYREVKVALK 165
NL++F +L EF++I D I +ENEA ILLNSLPE++++VK LK
Sbjct: 121 NLNEFKRLSSEFRSIRDNIREENEAFILLNSLPESFKDVKTILK 164
BLAST of Lag0041626 vs. NCBI nr
Match:
XP_038890043.1 (uncharacterized protein LOC120079747 [Benincasa hispida])
HSP 1 Score: 193.4 bits (490), Expect = 1.9e-45
Identity = 93/164 (56.71%), Postives = 126/164 (76.83%), Query Frame = 0
Query: 1 MAVPRYDIEKFYGKGDFDPWKAKIKAILGQQKTLKAIQDPKEVPTTTTQDKKDNMQEATY 60
MA RY+IEKF K DF+ WK KIK +LGQQK L AI DP + P T T+ +K+ ++
Sbjct: 1 MATTRYEIEKFDSKTDFELWKVKIKVVLGQQKALLAITDPAKYPETLTEAEKETIEVNAC 60
Query: 61 RTLILNLSNNVLRQVLDQDTAYKIWTKLHELYLTKDLPNKAYLRERFCTYKMDPSKSMTD 120
T++LN+++NVLRQV++Q TAY +W KL+E+YL KDL NKA+LRERF TYKMD +KS+TD
Sbjct: 61 GTIVLNVTDNVLRQVINQPTAYALWNKLNEIYLNKDLSNKAFLRERFFTYKMDAAKSLTD 120
Query: 121 NLDDFMKLWYEFKTIGDKIGDENEALILLNSLPENYREVKVALK 165
L++F +L EF++IG IG+ENEA ILLNSLPE++++ K A+K
Sbjct: 121 ILNEFKRLSSEFRSIGYNIGEENEAFILLNSLPESFKDAKTAIK 164
BLAST of Lag0041626 vs. NCBI nr
Match:
XP_038889933.1 (uncharacterized protein LOC120079695 [Benincasa hispida])
HSP 1 Score: 188.7 bits (478), Expect = 4.6e-44
Identity = 90/170 (52.94%), Postives = 130/170 (76.47%), Query Frame = 0
Query: 1 MAVPRYDIEKFYGKGDFDPWKAKIKAILGQQKTLKAIQDPKEVPTTTTQDKKDNMQEATY 60
M R++IEKF GK DF+ WKAKIKA+LGQQK L AI D + P T T +K+ ++ Y
Sbjct: 1 MTTTRFEIEKFDGKTDFELWKAKIKAVLGQQKALLAITDLTKYPKTFTDVEKEIIEVNAY 60
Query: 61 RTLILNLSNNVLRQVLDQDTAYKIWTKLHELYLTKDLPNKAYLRERFCTYKMDPSKSMTD 120
T++LN+++NVLRQ++D+ TA+ +W KL+E+YL KDL NKA+ R+RF TYKMD +KS+T+
Sbjct: 61 GTIVLNVTDNVLRQIVDRQTAFDLWNKLNEIYLNKDLLNKAFSRKRFFTYKMDYAKSLTE 120
Query: 121 NLDDFMKLWYEFKTIGDKIGDENEALILLNSLPENYREVKVALKKQNQKS 171
NL++F +L EF++IGD IG+ENE ILLNSLP+++++VK +K ++S
Sbjct: 121 NLNEFKRLSLEFRSIGDNIGEENEVFILLNSLPDSFKDVKATMKYGRKRS 170
BLAST of Lag0041626 vs. ExPASy Swiss-Prot
Match:
P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)
HSP 1 Score: 99.0 bits (245), Expect = 6.3e-20
Identity = 50/156 (32.05%), Postives = 89/156 (57.05%), Query Frame = 0
Query: 1 MAVPRYDIEKFYGKGDFDPWKAKIKAILGQQKTLKAIQDPKEVPTTTTQDKKDNMQEATY 60
M+ +Y++ KF G F W+ +++ +L QQ K + + P T + ++ E
Sbjct: 1 MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAA 60
Query: 61 RTLILNLSNNVLRQVLDQDTAYKIWTKLHELYLTKDLPNKAYLRERFCTYKMDPSKSMTD 120
+ L+LS++V+ ++D+DTA IWT+L LY++K L NK YL+++ M +
Sbjct: 61 SAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLS 120
Query: 121 NLDDFMKLWYEFKTIGDKIGDENEALILLNSLPENY 157
+L+ F L + +G KI +E++A++LLNSLP +Y
Sbjct: 121 HLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSY 156
BLAST of Lag0041626 vs. ExPASy TrEMBL
Match:
A0A2P5FE65 (Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_080180 PE=4 SV=1)
HSP 1 Score: 174.5 bits (441), Expect = 4.4e-40
Identity = 85/163 (52.15%), Postives = 116/163 (71.17%), Query Frame = 0
Query: 1 MAVPRYDIEKFYGKGDFDPWKAKIKAILGQQKTLKAIQDPKEVPTTTTQDKKDNMQEATY 60
M + +IEKF GKGDF+ WK K+KA+L QQK KA+ D +P T +K+ + E Y
Sbjct: 1 MGTSKIEIEKFDGKGDFNMWKKKMKAVLVQQKCAKALGDVSGLPETMKPSEKEELLETAY 60
Query: 61 RTLILNLSNNVLRQVLDQDTAYKIWTKLHELYLTKDLPNKAYLRERFCTYKMDPSKSMTD 120
LILNL++NVLRQV +QDTA K+W+KL LYLTK L NK YL+E+ +KMD +KS+ D
Sbjct: 61 SLLILNLADNVLRQVDEQDTAAKVWSKLDSLYLTKTLSNKIYLKEQLFGFKMDSTKSLED 120
Query: 121 NLDDFMKLWYEFKTIGDKIGDENEALILLNSLPENYREVKVAL 164
NLDDF ++ I +KI DEN+A+I+LNSLPE+Y+++K A+
Sbjct: 121 NLDDFKRITVSLANIDEKINDENQAIIILNSLPESYKDLKSAI 163
BLAST of Lag0041626 vs. ExPASy TrEMBL
Match:
A0A5C7GXL9 (Sucrose-phosphate phosphatase OS=Acer yangbiense OX=1000413 GN=EZV62_025112 PE=3 SV=1)
HSP 1 Score: 174.1 bits (440), Expect = 5.7e-40
Identity = 85/162 (52.47%), Postives = 118/162 (72.84%), Query Frame = 0
Query: 5 RYDIEKFYGKGDFDPWKAKIKAILGQQKTLKAIQDPKEVPTTTTQDKKDNMQEATYRTLI 64
++DI+KF G GDF W+ K+KA+L QQK LKAI+ P+++P + T ++KD+M E T+I
Sbjct: 122 KFDIDKFDGSGDFGIWRRKVKALLSQQKILKAIEGPEKLPDSLTVEQKDDMLEMALGTII 181
Query: 65 LNLSNNVLRQVLDQDTAYKIWTKLHELYLTKDLPNKAYLRERFCTYKMDPSKSMTDNLDD 124
LNLS+NVLR++ D+ TA +W KL LYLTK L NK YL+ER +KMD SK + NLDD
Sbjct: 182 LNLSDNVLREINDEKTACDVWKKLESLYLTKSLTNKIYLKERLFGFKMDASKGLGKNLDD 241
Query: 125 FMKLWYEFKTIG--DKIGDENEALILLNSLPENYREVKVALK 165
F K+ E G +K+ DENEA+ILLNSLP+++++VK A+K
Sbjct: 242 FKKMTIELANAGEDEKLSDENEAIILLNSLPDSFKDVKAAIK 283
BLAST of Lag0041626 vs. ExPASy TrEMBL
Match:
A0A5C7I661 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_011589 PE=3 SV=1)
HSP 1 Score: 174.1 bits (440), Expect = 5.7e-40
Identity = 85/162 (52.47%), Postives = 118/162 (72.84%), Query Frame = 0
Query: 5 RYDIEKFYGKGDFDPWKAKIKAILGQQKTLKAIQDPKEVPTTTTQDKKDNMQEATYRTLI 64
++DI+KF G GDF W+ K+KA+L QQK LKAI+ P+++P + T ++KD+M E T+I
Sbjct: 387 KFDIDKFDGSGDFGIWRRKVKALLSQQKILKAIEGPEKLPDSLTVEQKDDMLEMALGTII 446
Query: 65 LNLSNNVLRQVLDQDTAYKIWTKLHELYLTKDLPNKAYLRERFCTYKMDPSKSMTDNLDD 124
LNLS+NVLR++ D+ TA +W KL LYLTK L NK YL+ER +KMD SK + NLDD
Sbjct: 447 LNLSDNVLREINDEKTACDVWKKLESLYLTKSLTNKIYLKERLFGFKMDASKGLGKNLDD 506
Query: 125 FMKLWYEFKTIG--DKIGDENEALILLNSLPENYREVKVALK 165
F K+ E G +K+ DENEA+ILLNSLP+++++VK A+K
Sbjct: 507 FKKMTIELANAGEDEKLSDENEAIILLNSLPDSFKDVKAAIK 548
BLAST of Lag0041626 vs. ExPASy TrEMBL
Match:
A0A2P5CTT8 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_273130 PE=4 SV=1)
HSP 1 Score: 173.3 bits (438), Expect = 9.8e-40
Identity = 84/164 (51.22%), Postives = 115/164 (70.12%), Query Frame = 0
Query: 1 MAVPRYDIEKFYGKGDFDPWKAKIKAILGQQKTLKAIQDPKEVPTTTTQDKKDNMQEATY 60
M + +IEKF GKGDF+ WK K+KA+L QQK K + D +P T +K+ + E Y
Sbjct: 1 MGTSKIEIEKFDGKGDFNMWKKKMKAVLVQQKCAKVLGDASGLPETMKPSEKEELLETAY 60
Query: 61 RTLILNLSNNVLRQVLDQDTAYKIWTKLHELYLTKDLPNKAYLRERFCTYKMDPSKSMTD 120
LILNL++NVLRQV +QDTA K+W+KL LYLTK L NK YL+E+ +KMD +KS+ D
Sbjct: 61 SLLILNLADNVLRQVDEQDTAAKVWSKLDSLYLTKTLSNKIYLKEQLFGFKMDSTKSLED 120
Query: 121 NLDDFMKLWYEFKTIGDKIGDENEALILLNSLPENYREVKVALK 165
NLDDF ++ I +KI DEN+A+I+LNSLPE+Y+++K +K
Sbjct: 121 NLDDFKRITVSLANIDEKINDENQAIIILNSLPESYKDLKSTIK 164
BLAST of Lag0041626 vs. ExPASy TrEMBL
Match:
A0A5A7U6R2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00930 PE=4 SV=1)
HSP 1 Score: 172.6 bits (436), Expect = 1.7e-39
Identity = 78/164 (47.56%), Postives = 117/164 (71.34%), Query Frame = 0
Query: 1 MAVPRYDIEKFYGKGDFDPWKAKIKAILGQQKTLKAIQDPKEVPTTTTQDKKDNMQEATY 60
M +++IEKF G GDF W +I AILG QK LKA++DPKE+P T T+ +++ ++E Y
Sbjct: 1 MTTTKFEIEKFDGNGDFTLWTKRITAILGSQKALKALEDPKELPATLTKSERETLEEVAY 60
Query: 61 RTLILNLSNNVLRQVLDQDTAYKIWTKLHELYLTKDLPNKAYLRERFCTYKMDPSKSMTD 120
TLI+N+++NVLRQV+++ TA+ W KL LY KDLPNK +++E+ ++K + +K++ +
Sbjct: 61 STLIMNITDNVLRQVIEETTAFATWEKLKSLYEKKDLPNKMFIKEKLFSFKKNQNKNLDE 120
Query: 121 NLDDFMKLWYEFKTIGDKIGDENEALILLNSLPENYREVKVALK 165
NLD+F KL G+K+G ENEA IL+NS+ + Y+EVK LK
Sbjct: 121 NLDEFKKLTNALNQTGEKLGAENEAAILINSIHDTYKEVKTGLK 164
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P10978 | 6.3e-20 | 32.05 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... | [more] |
Match Name | E-value | Identity | Description | |
A0A2P5FE65 | 4.4e-40 | 52.15 | Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_080... | [more] |
A0A5C7GXL9 | 5.7e-40 | 52.47 | Sucrose-phosphate phosphatase OS=Acer yangbiense OX=1000413 GN=EZV62_025112 PE=3... | [more] |
A0A5C7I661 | 5.7e-40 | 52.47 | Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_011589 PE=3 SV=1 | [more] |
A0A2P5CTT8 | 9.8e-40 | 51.22 | Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_273130 PE=4 SV... | [more] |
A0A5A7U6R2 | 1.7e-39 | 47.56 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |