Lag0041611 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0041611
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr13: 21930326 .. 21930685 (-)
RNA-Seq ExpressionLag0041611
SyntenyLag0041611
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATAAAGGTAAAGCCCCAGTTGAACAGGAGAAATCTTCATTGGAGTACTGCAAGGCCGTCACTGTGCATCACGAGGAGGAGACTCAAGTAGCTAAGGAGGATGAAACTACTAAAACTGAGGAACTCACTGGAGAAGTTGAGGAGGGTACCACCTCAAACGAAGCTGAAAAGCTTATACCTGAGCCCTCTATCCATTTTCCTATTGTTTTAGTTCCTAAGTCAAAGAATAGGAAAAAGAAAAATTTGAAGGCTCAGTTTAATAAGTTTCTTGATGCTTTTACAGGGTTGACTGTTAATATTCCTTTTGCAGATGCATTGAAGCAGATGCCTCATTATAAGAAGTTCATGAAGGAATGA

mRNA sequence

ATGAATAAAGGTAAAGCCCCAGTTGAACAGGAGAAATCTTCATTGGAGTACTGCAAGGCCGTCACTGTGCATCACGAGGAGGAGACTCAAGTAGCTAAGGAGGATGAAACTACTAAAACTGAGGAACTCACTGGAGAAGTTGAGGAGGGTACCACCTCAAACGAAGCTGAAAAGCTTATACCTGAGCCCTCTATCCATTTTCCTATTGTTTTAGTTCCTAAGTCAAAGAATAGGAAAAAGAAAAATTTGAAGGCTCAGTTTAATAAGTTTCTTGATGCTTTTACAGGGTTGACTGTTAATATTCCTTTTGCAGATGCATTGAAGCAGATGCCTCATTATAAGAAGTTCATGAAGGAATGA

Coding sequence (CDS)

ATGAATAAAGGTAAAGCCCCAGTTGAACAGGAGAAATCTTCATTGGAGTACTGCAAGGCCGTCACTGTGCATCACGAGGAGGAGACTCAAGTAGCTAAGGAGGATGAAACTACTAAAACTGAGGAACTCACTGGAGAAGTTGAGGAGGGTACCACCTCAAACGAAGCTGAAAAGCTTATACCTGAGCCCTCTATCCATTTTCCTATTGTTTTAGTTCCTAAGTCAAAGAATAGGAAAAAGAAAAATTTGAAGGCTCAGTTTAATAAGTTTCTTGATGCTTTTACAGGGTTGACTGTTAATATTCCTTTTGCAGATGCATTGAAGCAGATGCCTCATTATAAGAAGTTCATGAAGGAATGA

Protein sequence

MNKGKAPVEQEKSSLEYCKAVTVHHEEETQVAKEDETTKTEELTGEVEEGTTSNEAEKLIPEPSIHFPIVLVPKSKNRKKKNLKAQFNKFLDAFTGLTVNIPFADALKQMPHYKKFMKE
Homology
BLAST of Lag0041611 vs. NCBI nr
Match: XP_024024249.1 (uncharacterized protein LOC112092388 [Morus notabilis])

HSP 1 Score: 75.5 bits (184), Expect = 3.5e-10
Identity = 44/120 (36.67%), Postives = 73/120 (60.83%), Query Frame = 0

Query: 1   MNKGKAPVEQEKSSLEYCKAVTVHHEEETQVAK-EDETTKTEELTGEVEEGTTSNEAEKL 60
           ++ G  P +  K+  E C AVT+  E+E +  K +++ TK +E+  +  + +   ++   
Sbjct: 15  LSSGSFPSDTVKNPKEQCNAVTLRSEKEVEALKPQEDKTKEKEVESKQPKESARPKSISF 74

Query: 61  IPEPSIHFPIVLVPKSKNRKKKNLKAQFNKFLDAFTGLTVNIPFADALKQMPHYKKFMKE 120
           +  P +  P   +P  +  KKKN+ AQF+KFL+ F  + +NIPFADAL+QMP+Y KFMK+
Sbjct: 75  LDNPPLITP--TLPYPQRFKKKNMDAQFSKFLEIFKKIHINIPFADALEQMPNYIKFMKD 132

BLAST of Lag0041611 vs. NCBI nr
Match: XP_024029937.1 (uncharacterized protein LOC112094091 [Morus notabilis])

HSP 1 Score: 75.1 bits (183), Expect = 4.6e-10
Identity = 44/119 (36.97%), Postives = 72/119 (60.50%), Query Frame = 0

Query: 2   NKGKAPVEQEKSSLEYCKAVTVHHEEETQVAK-EDETTKTEELTGEVEEGTTSNEAEKLI 61
           + GK P + E +S ++CKA+T+   +E +  K +++ TK EE+  E  + +   ++   +
Sbjct: 293 SSGKFPSDTEPNSKDHCKAITLRSGKEVEAPKPQEDKTKEEEVGTEQPKESARPKSISFL 352

Query: 62  PEPSIHFPIVLVPKSKNRKKKNLKAQFNKFLDAFTGLTVNIPFADALKQMPHYKKFMKE 120
             P +  P   +P  +  KKK L AQF+KFL+ F  + +NIPF DAL+QMP+Y KFM +
Sbjct: 353 DNPPLIAP--TLPYPQRFKKKKLDAQFSKFLEIFKKIHINIPFVDALEQMPNYVKFMND 409

BLAST of Lag0041611 vs. NCBI nr
Match: PON50721.1 (hypothetical protein TorRG33x02_313500 [Trema orientale])

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-09
Identity = 49/123 (39.84%), Postives = 73/123 (59.35%), Query Frame = 0

Query: 4   GKAPVEQEKSSLEYCKAVTVHHEEETQVAKEDETTKTEELTGEVEEGTTSNEAEKLIPEP 63
           GK P + E +  ++CKA+T+ +       KE E ++ +E  G++ +     E  K+I +P
Sbjct: 101 GKFPSDTETNPKDHCKAITLRN------GKEVEVSRLKENVGDMTKENVVEEPPKVISKP 160

Query: 64  -SIHF----PIVL--VPKSKNRKKKNLKAQFNKFLDAFTGLTVNIPFADALKQMPHYKKF 120
            SI F    PI+   +P  +  +KK L AQF K L+ F  L +NIPFADAL+QMP+Y KF
Sbjct: 161 SSISFLDNPPIITTPLPYPQRFQKKKLDAQFAKVLEIFKKLYINIPFADALEQMPNYVKF 217

BLAST of Lag0041611 vs. NCBI nr
Match: XP_024032903.1 (uncharacterized protein LOC112095347 [Morus notabilis])

HSP 1 Score: 71.6 bits (174), Expect = 5.1e-09
Identity = 51/124 (41.13%), Postives = 69/124 (55.65%), Query Frame = 0

Query: 2   NKGKAPVEQEKSSLEYCKAVTVHHEEETQVAKEDETTKTEELTGEVEEGTTSNEAEKLIP 61
           + GK P + E +  ++CKA+T+   +E +  K  E  KTEE     EE  T    E   P
Sbjct: 379 SSGKFPSDTEPNPKDHCKAITLRSGKEVEAPKPQE-DKTEE-----EEVGTEQLKESARP 438

Query: 62  EPSIHFP------IVLVPKSKNRKKKNLKAQFNKFLDAFTGLTVNIPFADALKQMPHYKK 120
           + SI FP         +P  +  KKK L AQF KFL+ F  + +NIPF DAL+QMP+Y K
Sbjct: 439 K-SISFPDNPPLITPTLPYPQRFKKKKLDAQFLKFLEIFKKIHINIPFTDALEQMPNYVK 495

BLAST of Lag0041611 vs. NCBI nr
Match: RVW26218.1 (Gag-Pol polyprotein [Vitis vinifera])

HSP 1 Score: 71.2 bits (173), Expect = 6.6e-09
Identity = 43/117 (36.75%), Postives = 66/117 (56.41%), Query Frame = 0

Query: 3   KGKAPVEQEKSSLEYCKAVTVHHEEETQVAKEDETTKTEELTGEVEEGTTSNEAEKLIPE 62
           +G  P   E +  E+ KA+T+   +E + +KE E    +E T   +E   S   +  IP+
Sbjct: 171 QGSLPSITETNPKEHVKAITLRSGKELEQSKEAEQQTNKEDTSVPKEHDASTPIQPSIPK 230

Query: 63  PSIHFPIVLVPKSKNRKKKNLKAQFNKFLDAFTGLTVNIPFADALKQMPHYKKFMKE 120
           PS +     +P  +  KK+NL  QF+KF+D F  L +N+PF D ++QMP Y KF+KE
Sbjct: 231 PSSN----AIPFPQKLKKQNLDKQFSKFIDNFKSLHINLPFVDIMEQMPKYAKFLKE 283

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_024024249.13.5e-1036.67uncharacterized protein LOC112092388 [Morus notabilis][more]
XP_024029937.14.6e-1036.97uncharacterized protein LOC112094091 [Morus notabilis][more]
PON50721.11.3e-0939.84hypothetical protein TorRG33x02_313500 [Trema orientale][more]
XP_024032903.15.1e-0941.13uncharacterized protein LOC112095347 [Morus notabilis][more]
RVW26218.16.6e-0936.75Gag-Pol polyprotein [Vitis vinifera][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0041611.1Lag0041611.1mRNA