Lag0041593 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0041593
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr13: 21370503 .. 21371027 (+)
RNA-Seq ExpressionLag0041593
SyntenyLag0041593
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCTTGACGATATCATGAACCAGTGGGAGAACTTTAATCTCACGGCAGAGGAAGAGTGCACGACAGTTGAGGTGGATCGACAGGCCGCTATCGTGACGGCCAATTCGATGGGTGCTAGTTTGGTCGGGAAATTGTTGGCTCCTCGTATTATTTCAGGCAAGGTTATGCGGAAAACTTTCAAGGCGGCATGGAATATCCCCAATGGCCTGATTGTGGAAAAAATAGGTGCAAATCTATTTTTGTTCACCCTCCGTTCGGAAGATGAGTTAGCTCGTGTCCTTCGCCAGGGGACTTGGTTATTCGATAAGCATCTTCTTGTATCATCTAAACTGATTCTGATGGTGAAACCCACTGCATTGGAGTTTAAATACTCCACGTTTTGGGTCCATTTTTGCGAGCTTCCGATGGATTTATTCAACCTATCCATGGCGGAGCATTTGGGCAATGTTATTGGCAGATTTGAAGAATATGACCATGGTGGGCGTGGCGTGGGCTGGAGGAGAGTCTTAGGGTGCGAGTAA

mRNA sequence

ATGGCCCTTGACGATATCATGAACCAGTGGGAGAACTTTAATCTCACGGCAGAGGAAGAGTGCACGACAGTTGAGGTGGATCGACAGGCCGCTATCGTGACGGCCAATTCGATGGGTGCTAGTTTGGTCGGGAAATTGTTGGCTCCTCGTATTATTTCAGGCAAGGTTATGCGGAAAACTTTCAAGGCGGCATGGAATATCCCCAATGGCCTGATTGTGGAAAAAATAGGTGCAAATCTATTTTTGTTCACCCTCCGTTCGGAAGATGAGTTAGCTCGTGTCCTTCGCCAGGGGACTTGGTTATTCGATAAGCATCTTCTTGTATCATCTAAACTGATTCTGATGGTGAAACCCACTGCATTGGAGTTTAAATACTCCACGTTTTGGGTCCATTTTTGCGAGCTTCCGATGGATTTATTCAACCTATCCATGGCGGAGCATTTGGGCAATGTTATTGGCAGATTTGAAGAATATGACCATGGTGGGCGTGGCGTGGGCTGGAGGAGAGTCTTAGGGTGCGAGTAA

Coding sequence (CDS)

ATGGCCCTTGACGATATCATGAACCAGTGGGAGAACTTTAATCTCACGGCAGAGGAAGAGTGCACGACAGTTGAGGTGGATCGACAGGCCGCTATCGTGACGGCCAATTCGATGGGTGCTAGTTTGGTCGGGAAATTGTTGGCTCCTCGTATTATTTCAGGCAAGGTTATGCGGAAAACTTTCAAGGCGGCATGGAATATCCCCAATGGCCTGATTGTGGAAAAAATAGGTGCAAATCTATTTTTGTTCACCCTCCGTTCGGAAGATGAGTTAGCTCGTGTCCTTCGCCAGGGGACTTGGTTATTCGATAAGCATCTTCTTGTATCATCTAAACTGATTCTGATGGTGAAACCCACTGCATTGGAGTTTAAATACTCCACGTTTTGGGTCCATTTTTGCGAGCTTCCGATGGATTTATTCAACCTATCCATGGCGGAGCATTTGGGCAATGTTATTGGCAGATTTGAAGAATATGACCATGGTGGGCGTGGCGTGGGCTGGAGGAGAGTCTTAGGGTGCGAGTAA

Protein sequence

MALDDIMNQWENFNLTAEEECTTVEVDRQAAIVTANSMGASLVGKLLAPRIISGKVMRKTFKAAWNIPNGLIVEKIGANLFLFTLRSEDELARVLRQGTWLFDKHLLVSSKLILMVKPTALEFKYSTFWVHFCELPMDLFNLSMAEHLGNVIGRFEEYDHGGRGVGWRRVLGCE
Homology
BLAST of Lag0041593 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 128.6 bits (322), Expect = 5.1e-26
Identity = 66/164 (40.24%), Postives = 92/164 (56.10%), Query Frame = 0

Query: 4   DDIMNQWENFNLTAEEECTTVEVDRQAAIVTANSMGASLVGKLLAPRIISGKVMRKTFKA 63
           ++++  W+ F LT+EE+   ++VD  A  +    +  SLVGKLLA RIIS  V+ +    
Sbjct: 4   ENLLADWQKFKLTSEEDEIAMDVDVDAVKMAEQGLAYSLVGKLLAKRIISADVLSRVLLL 63

Query: 64  AWNIPNGLIVEKIGANLFLFTLRSEDELARVLRQGTWLFDKHLLVSSKLILMVKPTALEF 123
           AW + + L VE IG NLFLF    E ++ RV++ G W FDK L+V  K       + LEF
Sbjct: 64  AWKVEHQLTVESIGKNLFLFHFCRECDMNRVMKTGPWFFDKALIVLQKPCSSKNISELEF 123

Query: 124 KYSTFWVHFCELPMDLFNLSMAEHLGNVIGRFEEYDHGGRGVGW 168
               FW+H  +LPM   N +MA  LGN IG F + D   +G  W
Sbjct: 124 NRVAFWIHLFDLPMSWLNKTMAIRLGNAIGNFVDVDCNEKGFSW 167

BLAST of Lag0041593 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 122.1 bits (305), Expect = 4.8e-24
Identity = 60/168 (35.71%), Postives = 93/168 (55.36%), Query Frame = 0

Query: 1   MALDDIMNQWENFNLTAEEECTTVEVDRQAAIVTANSMGASLVGKLLAPRIISGKVMRKT 60
           MA  +++ +W+NF LT+EE+   V++D  A   T   +  SL+ KLL+ R IS  V++ T
Sbjct: 1   MAASNLLEEWKNFKLTSEEDKIAVDIDSSALEGTGKCLELSLICKLLSKRSISCTVLKNT 60

Query: 61  FKAAWNIP-NGLIVEKIGANLFLFTLRSEDELARVLRQGTWLFDKHLLVSSKLILMVKPT 120
            K AW +      V+ IG N+FLF      +  R+LR G W FD+ L++    + + KP 
Sbjct: 61  LKIAWKLDCKAFSVDIIGFNIFLFNFNRSSDRNRILRMGPWTFDRALIIIDNPVSLTKPL 120

Query: 121 ALEFKYSTFWVHFCELPMDLFNLSMAEHLGNVIGRFEEYDHGGRGVGW 168
            ++F+  + WVHF +L +   N +MA  LGN IG FE+ +       W
Sbjct: 121 DMDFRNVSLWVHFFDLSLACMNKTMATRLGNAIGLFEDVESNANNFCW 168

BLAST of Lag0041593 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-23
Identity = 61/168 (36.31%), Postives = 93/168 (55.36%), Query Frame = 0

Query: 1   MALDDIMNQWENFNLTAEEECTTVEVDRQAAIVTANSMGASLVGKLLAPRIISGKVMRKT 60
           MA  D++ +W+NF LT+EEE T ++VD  A   T + +   LVGKL   R I+  VM+ T
Sbjct: 1   MATFDLLEEWKNFKLTSEEEETAIDVDASAPATTGSRLEQILVGKLFIKRPITCPVMKNT 60

Query: 61  FKAAWNIPNGLI-VEKIGANLFLFTLRSEDELARVLRQGTWLFDKHLLVSSKLILMVKPT 120
            + AW + N    V+ +G NLFLF+     +  ++ + G W FD+ L++ +K + ++ P+
Sbjct: 61  MRTAWKLENNAFEVQSLGYNLFLFSFARALDRNKIYKSGPWTFDRTLVLINKPVALIPPS 120

Query: 121 ALEFKYSTFWVHFCELPMDLFNLSMAEHLGNVIGRFEEYDHGGRGVGW 168
            L+F     WV F +LP+      MA  LGN +G FEE D       W
Sbjct: 121 ELDFTKLPIWVRFFDLPLGCITRDMAIRLGNALGGFEEADCDDLNPDW 168

BLAST of Lag0041593 vs. NCBI nr
Match: XP_028122006.1 (uncharacterized protein LOC114319195 [Camellia sinensis])

HSP 1 Score: 105.9 bits (263), Expect = 3.5e-19
Identity = 55/168 (32.74%), Postives = 88/168 (52.38%), Query Frame = 0

Query: 4   DDIMNQWENFNLTAEEECTTVEVDRQAAIVTANSMGASLVGKLLAPRIISGKVMRKTFKA 63
           D +++     +LT+EE+   V +  ++  +        LVGKLL  R  + + M+ T  +
Sbjct: 3   DSLLDLTRTLSLTSEED-AVVRIGGESTSLMMGKSDMCLVGKLLTRRPFNVEAMKNTLLS 62

Query: 64  AWNIPNGLIVEKIGANLFLFTLRSEDELARVLRQGTWLFDKHLLVSSKLILMVKPTALEF 123
            W    G+ V  IG NLF+F      +  RVL  G W FDKHLL+  ++   V+P+ ++ 
Sbjct: 63  VWQPTKGMQVRVIGDNLFVFVFGHVVDKRRVLSDGPWTFDKHLLMLGEMDPNVQPSDIQL 122

Query: 124 KYSTFWVHFCELPMDLFNLSMAEHLGNVIGRFEEYDHGGRGVGWRRVL 172
               FWVH C LP+ L N  + E +GN +G+F + D+   G+ W R +
Sbjct: 123 TRVQFWVHVCNLPLVLMNKKVGEIVGNAVGQFIDMDYEDGGIVWGRTM 169

BLAST of Lag0041593 vs. NCBI nr
Match: XP_028124075.1 (uncharacterized protein LOC114321128 [Camellia sinensis])

HSP 1 Score: 104.4 bits (259), Expect = 1.0e-18
Identity = 54/168 (32.14%), Postives = 87/168 (51.79%), Query Frame = 0

Query: 4   DDIMNQWENFNLTAEEECTTVEVDRQAAIVTANSMGASLVGKLLAPRIISGKVMRKTFKA 63
           D +++     +LT+EE+   V +   +  +        LVGKLL  R  + + M+ T  +
Sbjct: 3   DSLVDLTRTLSLTSEED-AVVRIGGDSTSLMMGKSDMCLVGKLLTRRPFNVEAMKNTLLS 62

Query: 64  AWNIPNGLIVEKIGANLFLFTLRSEDELARVLRQGTWLFDKHLLVSSKLILMVKPTALEF 123
            W    G+ V  IG NLF+F      +  RVL  G W FDKHLL+  ++   V+P+ ++ 
Sbjct: 63  VWQPTKGMQVRVIGDNLFVFVFGHVVDKRRVLSNGPWTFDKHLLMLGEMDPNVQPSDIQL 122

Query: 124 KYSTFWVHFCELPMDLFNLSMAEHLGNVIGRFEEYDHGGRGVGWRRVL 172
               FWVH C LP+ L N  + + +GN +G+F + D+   G+ W R +
Sbjct: 123 TGVQFWVHVCNLPLVLMNKQVGQIVGNAVGQFIDMDYEDGGIAWGRTM 169

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156185.15.1e-2640.24uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha... [more]
XP_022132681.14.8e-2435.71uncharacterized protein LOC111005481 [Momordica charantia][more]
XP_022158377.11.1e-2336.31uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_028122006.13.5e-1932.74uncharacterized protein LOC114319195 [Camellia sinensis][more]
XP_028124075.11.0e-1832.14uncharacterized protein LOC114321128 [Camellia sinensis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 36..160
e-value: 1.0E-22
score: 80.3

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0041593.1Lag0041593.1mRNA