Lag0041592 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0041592
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr13: 21335994 .. 21336668 (+)
RNA-Seq ExpressionLag0041592
SyntenyLag0041592
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTCGAAGTTTTCTCAAATTTTGATTAAATCGAACCCAGTCCTGGAACTGAGGTCGAAGCCTGTATCCATCAGGTCTAATATATTTTGAACCCAACCCTAGAGCTAAGGTCGAAGTTTTCTCAAATTTTGGTTAAATCGAATCCAGTCCTGGAACTGAGGTCGAAGCCTGTATCCATCAGGTCCAATATATTTCGAACCCAACCCTAAAACTTAGGTCGAAGTTTTCTCAAATTCTGGTTAAATCGAACCCAGTCCTGGAACTGAGGTCGAAGCCTGTATCCATCAGGTCCAATATATTTCAAACCCAGCCCTAGAGTCGAGGTCGAAGTCTTCTCAAATTCTGGTTAAATTGAACCCAGTCCTAGAACTGAGGTCGAAGTCGGTATCCATCAGGTCCAATATATTTCGAACCCAGTCCTAGAGCTGAGGTCAAAATCCTCTAAAATTCTGGTTAAATCGAACCCATACCTGGAACTGAGGTCGAAGCCTATATCCATCAGGTCCAATATATTTCGAACCCAGCCCTAAAACTGAGGTCAAAGTTTTCTCAAATTCTTGTTAAATTGAACCCAGTCCTGGAACTGAGGTCGAAGCCTGTATCCATCAGGTCCAATATATTTCAAACCCAGCCCTAGAGTCGAGGTCGAAAGTCTTCTCAAATTATGGTTAA

mRNA sequence

ATGAGGTCGAAGTTTTCTCAAATTTTGATTAAATCGAACCCAGTCCTGGAACTGAGGTCGAAGCCTGTATCCATCAGTCCTGGAACTGAGGTCGAAGCCTGTATCCATCAGGTCCAATATATTTCGAACCCAACCCTAAAACTTAGGTCGAAGTTTTCTCAAATTCTGGTTAAATCGAACCCAGTCCTGGAACTGAGGTCGAAGCCTGTATCCATCAGTCCTAGAACTGAGGTCGAAGTCGGTATCCATCAGGTCCAATATATTTCGAACCCAGTCCTAGAGCTGAGGTCAAAATCCTCTAAAATTCTGGTTAAATCGAACCCATACCTGGAACTGAGGTCGAAGCCTATATCCATCAGTCCTGGAACTGAGGTCGAAGCCTGTATCCATCAGGTCCAATATATTTCAAACCCAGCCCTAGAGTCGAGGTCGAAAGTCTTCTCAAATTATGGTTAA

Coding sequence (CDS)

ATGAGGTCGAAGTTTTCTCAAATTTTGATTAAATCGAACCCAGTCCTGGAACTGAGGTCGAAGCCTGTATCCATCAGTCCTGGAACTGAGGTCGAAGCCTGTATCCATCAGGTCCAATATATTTCGAACCCAACCCTAAAACTTAGGTCGAAGTTTTCTCAAATTCTGGTTAAATCGAACCCAGTCCTGGAACTGAGGTCGAAGCCTGTATCCATCAGTCCTAGAACTGAGGTCGAAGTCGGTATCCATCAGGTCCAATATATTTCGAACCCAGTCCTAGAGCTGAGGTCAAAATCCTCTAAAATTCTGGTTAAATCGAACCCATACCTGGAACTGAGGTCGAAGCCTATATCCATCAGTCCTGGAACTGAGGTCGAAGCCTGTATCCATCAGGTCCAATATATTTCAAACCCAGCCCTAGAGTCGAGGTCGAAAGTCTTCTCAAATTATGGTTAA

Protein sequence

MRSKFSQILIKSNPVLELRSKPVSISPGTEVEACIHQVQYISNPTLKLRSKFSQILVKSNPVLELRSKPVSISPRTEVEVGIHQVQYISNPVLELRSKSSKILVKSNPYLELRSKPISISPGTEVEACIHQVQYISNPALESRSKVFSNYG
Homology
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BLAST of Lag0041592 vs. NCBI nr
Match: KAA0042506.1 (putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-04
Identity = 50/115 (43.48%), Postives = 67/115 (58.26%), Query Frame = 0 

Query: 9   LIKSNPVLELRSKPV-SISPGTEVEACIHQVQYIS-NPTLKLRSKFSQILVKSNPVLELR 68
           L+KS+P L+LRSKPV       E EAC+    +I  +P  K+   FS  LVKS+P L+LR
Sbjct: 253 LVKSSPDLKLRSKPVYQPRSEAEAEACLSSPLFIKPSPGAKV-DAFSN-LVKSSPDLKLR 312

Query: 69  SKPVSISPRTEVEVGIHQVQYISNPVLELRSKSSKI-----LVKSNPYLELRSKP 117
            KPV   PR+E EV       +S+P+    S  +K+     LVKS+P L+LR KP
Sbjct: 313 PKPV-YQPRSEAEV----EACLSSPLFIKPSPGAKVDAFSNLVKSSPDLKLRPKP 360

The following BLAST results are available for this feature:
BLAST of Lag0041592 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0042506.11.3e-0443.48putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cu... [more]
BLAST of Lag0041592 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0041592.1Lag0041592.1mRNA