Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGTTGCAAGAAGATAAAGCTTCTATCGCTGGAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAATTTCTTGCTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGGGACTAGAACTATGGAAGAAAGAATGGTTGAGATGCAGGAGCACACGACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGAGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCGTAAAAAATCACGGCAAAGGAAATACTATAGTGCAAGATGATCAACCACAGTGTTCTGCTTCGATCGCTTCACTATCCATCCAACAGCTCCAAGATATGATCACAAACTGTATTAGAGCCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTATTCCAAACCTTATACTAAGAGGATTGATAACTTGAGAACGCCAATCGGGTATCAGCCACCAAAATTTCAGCAGTTTGATGGAAAAGGCAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAGGGGACCTACTAGTCAAGCAGTTCGTTCGAACACTTAAAGGAAATGCTTTTGACTGGTACACTGATCTAGAACCTGAGTCATTAGACAGTTGGGAGGAACTCGAAAGAGAGTTTTTGAATCGCTTCTACAGCACTAGAAGAACCGTTAGCATGTTCGAGCTCACCAACACTAAACAACGAAAAGGTGAACTCGTTGTTAACTATATAAATCGCTGGAGAGTCATGAGTCTAGATTGCAAAGATCGTCTCACTGAACTCTCTTCCGTCGAGATGTGCATTCAAGGCATGCACTGGGAACTCCTCTACATCCTTAAAGGTATAAAACCTCGCACCTTTGAAGAACTAGCAACTCGCGCCCACGATATGGAACTAAGTATTGCTAGCCAAGAAAACCAAGACCTTCTCCTCCCTAACATGAGAAAAGAAGGAAGGAACGATGAAGAGACTATAGAAGAATCCATGGTTGTAAACACAACCCTTCCCAAGTCGTCTTCGAAAGAAAAGCGACAAACTAATGGAGCGCATCACTTTAAAGGAAAGACAAAGAAAATCTATCCTTTCCCTGATGCCGACATCCCTGATATGTTGGAACAACTATTGGAAGCGCAACTGATAAAGCTTCCTAAGTGTAAACGACCAGAAGAGATGGAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTATTGATCATCAAGTGGAAAGATGTTTCGTCCTAAAGGACTTAATCCTAAAGCTGGCTATGGAAAGAAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGAAAAGAGCAAACATCAAAGAAAGAAGGATCTTAAGAAACTTCAACCCAAGAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCCTTCTCCAAAAATTTCCACAAAAAGGAAAAAAAGAACTTTGCGACTTCGTACTGTATCGACGTAGAAGAAGTTGACAATTCTAAGAAGAGTGAACAAAGGACTTCCGTCTTTGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCATAGAATGAGTATGGTCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCAGAATCTCATTATCTTGACCAATCCTGCAAATGAAGGATCTGATCAAGACCATGACAAAGATAAGAGCTTTTAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGAGCAAAAATCTTGAACTACGTTATGACTTGATCCCTATTCCATAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTCTATAAACAAAAAAAAAAAGGTTATTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCATTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGTGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTTTCAAGGTCGAAGGTTCTCACTCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGTAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTTGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTTACGCGCTTTGCTGCAGTTCCTTCCTCACAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCTTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCAAGCGCTGTGATTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCACTTCGTTGCTCCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCCTCTCTCCACTGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGACGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTACTCCTTCTTCAAGTTCGAAGGCGTTTCTCTCCAGCTGCTCCTTCTCCAAGTTCAAAGGCGCTTCCCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCAAAGGTGCTTCTCTCCACCCCTTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGCAGTTGACGGCGTTCGCTTCGCTTCATCTTCAAAAATTGGCTGTTGA
mRNA sequence
ATGACGTTGCAAGAAGATAAAGCTTCTATCGCTGGAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAATTTCTTGCTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGGGACTAGAACTATGGAAGAAAGAATGAGCCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTATTCCAAACCTTATACTAAGAGGATTGATAACTTGAGAACGCCAATCGGGTATCAGCCACCAAAATTTCAGCAGTTTGATGGAAAAGGCAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAGGGGACCTACTAGTCAAGCAGTTCGTTCGAACACTTAAAGGAAATGCTTTTGACTGGTACACTGATCTAGAACCTGAGTCATTAGACAGTTGGGAGGAACTCGAAAGAGAGTTTTTGAATCGCTTCTACAGCACTAGAAGAACCGTTAGCATGTTCGAGCTCACCAACACTAAACAACGAAAAGGTGAACTCGTTGTTAACTATATAAATCGCTGGAGAGTCATGAGTCTAGATTGCAAAGATCGTCTCACTGAACTCTCTTCCGTCGAGATGTGCATTCAAGGCATGCACTGGGAACTCCTCTACATCCTTAAAGGTATAAAACCTCGCACCTTTGAAGAACTAGCAACTCGCGCCCACGATATGGAACTAAGTATTGCTAGCCAAGAAAACCAAGACCTTCTCCTCCCTAACATGAGAAAAGAAGGAAGGAACGATGAAGAGACTATAGAAGAATCCATGGTTGTAAACACAACCCTTCCCAAGTCGTCTTCGAAAGAAAAGCGACAAACTAATGGAGCGCATCACTTTAAAGGAAAGACAAAGAAAATCTATCCTTTCCCTGATGCCGACATCCCTGATATGTTGGAACAACTATTGGAAGCGCAACTGATAAAGCTTCCTAAGTGTAAACGACCAGAAGAGATGGAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTATTGATCATCAAGTGGAAAGATGTTTCGTCCTAAAGGACTTAATCCTAAAGCTGGCTATGGAAAGAAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGAAAAGAGCAAACATCAAAGAAAGAAGGATCTTAAGAAACTTCAACCCAAGAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCCTTCTCCAAAAATTTCCACAAAAAGGAAAAAAAGAACTTTGCGACTTCGTACTGTATCGACGTAGAAGAAGTTGACAATTCTAAGAAGAGTGAACAAAGGACTTCCGTCTTTGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCATAGAATGAGTATGGTCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCATTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGTGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTTTCAAGGTCGAAGGTTCTCACTCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGTAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTTACGCGCTTTGCTGCAGTTCCTTCCTCACAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCTTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCAAGCGCTGTGATTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCACTTCGTTGCTCCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCCTCTCTCCACTGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGACGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTACTCCTTCTTCAAGTTCGAAGGCGTTTCTCTCCAGCTGCTCCTTCTCCAAGTTCAAAGGCGCTTCCCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCAAAGGTGCTTCTCTCCACCCCTTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGCAGTTGACGGCGTTCGCTTCGCTTCATCTTCAAAAATTGGCTGTTGA
Coding sequence (CDS)
ATGACGTTGCAAGAAGATAAAGCTTCTATCGCTGGAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAATTTCTTGCTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGGGACTAGAACTATGGAAGAAAGAATGAGCCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTATTCCAAACCTTATACTAAGAGGATTGATAACTTGAGAACGCCAATCGGGTATCAGCCACCAAAATTTCAGCAGTTTGATGGAAAAGGCAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAGGGGACCTACTAGTCAAGCAGTTCGTTCGAACACTTAAAGGAAATGCTTTTGACTGGTACACTGATCTAGAACCTGAGTCATTAGACAGTTGGGAGGAACTCGAAAGAGAGTTTTTGAATCGCTTCTACAGCACTAGAAGAACCGTTAGCATGTTCGAGCTCACCAACACTAAACAACGAAAAGGTGAACTCGTTGTTAACTATATAAATCGCTGGAGAGTCATGAGTCTAGATTGCAAAGATCGTCTCACTGAACTCTCTTCCGTCGAGATGTGCATTCAAGGCATGCACTGGGAACTCCTCTACATCCTTAAAGGTATAAAACCTCGCACCTTTGAAGAACTAGCAACTCGCGCCCACGATATGGAACTAAGTATTGCTAGCCAAGAAAACCAAGACCTTCTCCTCCCTAACATGAGAAAAGAAGGAAGGAACGATGAAGAGACTATAGAAGAATCCATGGTTGTAAACACAACCCTTCCCAAGTCGTCTTCGAAAGAAAAGCGACAAACTAATGGAGCGCATCACTTTAAAGGAAAGACAAAGAAAATCTATCCTTTCCCTGATGCCGACATCCCTGATATGTTGGAACAACTATTGGAAGCGCAACTGATAAAGCTTCCTAAGTGTAAACGACCAGAAGAGATGGAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTATTGATCATCAAGTGGAAAGATGTTTCGTCCTAAAGGACTTAATCCTAAAGCTGGCTATGGAAAGAAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGAAAAGAGCAAACATCAAAGAAAGAAGGATCTTAAGAAACTTCAACCCAAGAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCCTTCTCCAAAAATTTCCACAAAAAGGAAAAAAAGAACTTTGCGACTTCGTACTGTATCGACGTAGAAGAAGTTGACAATTCTAAGAAGAGTGAACAAAGGACTTCCGTCTTTGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCATAGAATGAGTATGGTCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCATTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGTGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTTTCAAGGTCGAAGGTTCTCACTCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGTAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTTACGCGCTTTGCTGCAGTTCCTTCCTCACAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCTTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCAAGCGCTGTGATTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCACTTCGTTGCTCCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCCTCTCTCCACTGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGACGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTACTCCTTCTTCAAGTTCGAAGGCGTTTCTCTCCAGCTGCTCCTTCTCCAAGTTCAAAGGCGCTTCCCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCAAAGGTGCTTCTCTCCACCCCTTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGCAGTTGACGGCGTTCGCTTCGCTTCATCTTCAAAAATTGGCTGTTGA
Protein sequence
MTLQEDKASIAGGQETTLQGAYTNDKFLAKYNPLFEPDSDVVTVMMTGTRTMEERMSQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPESLDSWEELEREFLNRFYSTRRTVSMFELTNTKQRKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQGMHWELLYILKGIKPRTFEELATRAHDMELSIASQENQDLLLPNMRKEGRNDEETIEESMVVNTTLPKSSSKEKRQTNGAHHFKGKTKKIYPFPDADIPDMLEQLLEAQLIKLPKCKRPEEMEKVDDPKYCKYHRVIDHQVERCFVLKDLILKLAMERKIELDLDEVAQSNLATIKEKSKHQRKKDLKKLQPKRKRSKKFSQPQQLVMLNKSFSKNFHKKEKKNFATSYCIDVEEVDNSKKSEQRTSVFDRIKPPTTRPSVFHRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKFLLSKFEGPYTVRYCVVPSPSSKVLRCILLRCSFSKFEGSQLYDCYVVPPPSVKDLMWCVVALFPLLSSSMVLTQLCWSFFSPSSKVLTRSVAVPSFKVEGSHSLRCSSFSPSSKVHALRCSSFSQIRRFSRASLQFLPPSSKVLTRFAAVPSSQFKGSHALRCSSFPQVRRFSRRFAAVPSSKFEGSHIASLRAALRCSSFLQVRRFSLASLQFLPPNSKVSKVLKRCDSLQFLPPSSKVLMHFVAPSSKFEGSLTRCCSSFLQVRRFPHALRSLLLQVRRRLSPLFLPPSSKVLMRFVATFLQVRRFSHALLQLLPPSSKVPSRASLAPSPSSKTLLSTAPSPSSKALLSTTPSSSSKAFLSSCSFSKFKGASLHCSFSKFEGASLYCSFSKFKGASLHPFFEGSPLRFSFSKFEGSPLLLFKCLAAVDVLVPLHLQMLAVDGVRFASSSKIGC
Homology
BLAST of Lag0041578 vs. NCBI nr
Match:
KAA0056121.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 599.0 bits (1543), Expect = 7.8e-167
Identity = 330/536 (61.57%), Postives = 394/536 (73.51%), Query Frame = 0
Query: 58 QYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTR 117
QYGGP Q LY KPYTKRIDNLR P GYQPPKFQQFDGKGNPKQH+AHF++TCE AGTR
Sbjct: 178 QYGGPAQTFSLYFKPYTKRIDNLRMPNGYQPPKFQQFDGKGNPKQHVAHFIKTCETAGTR 237
Query: 118 GDLLVKQFVRTLKGNAFDWYTDLEPESLDSWEELEREFLNRFYSTRRTVSMFELTNTKQR 177
GDLLVKQFVRTLKGNA DWY DLEPES+D+WE+LER+FLNRFYSTR VSM ELTNT+Q+
Sbjct: 238 GDLLVKQFVRTLKGNACDWYIDLEPESIDNWEQLERDFLNRFYSTRHIVSMMELTNTRQQ 297
Query: 178 KGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQGMHWELLYILKGIKPRTFEELATRAH 237
KGELV++YINRWR +SLDCKDRLTELS+VEMC QGMHW LLYIL+GIKPRTFEELATRAH
Sbjct: 298 KGELVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAH 357
Query: 238 DMELSIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTTLPKSSSKEKRQTNG 297
DMELSIA++ +D L+P R + ++T I+ESMVV+ T KS SK K
Sbjct: 358 DMELSIANRGAKDFLIPKSRSDKNELDDTKKIANSVIKESMVVHATPLKSFSKRKETKIE 417
Query: 298 AHH---------FKGKTKKIYPFPDADIPDMLEQLLEAQLIKLPKCKRPEEMEKVDDPKY 357
H K + +K+YPFPD+D+ DMLEQLLE QLI+LP+CKRPE+ KVDDP Y
Sbjct: 418 RKHDGDEKRQSTLKERQEKVYPFPDSDVADMLEQLLENQLIQLPECKRPEQAGKVDDPNY 477
Query: 358 CKYHRVIDHQVERCFVLKDLILKLAMERKIELDLDEVAQSNLATIKEKSKHQRKKDLKKL 417
CKYHRVI H VE+CFVLK+LILKLA E+KIELD+DEVAQ+N A I+ S + KD L
Sbjct: 478 CKYHRVISHPVEKCFVLKELILKLAREKKIELDIDEVAQTNHA-IEMTSNPIKGKDEDFL 537
Query: 418 QPKRK--------RSKKFSQPQQLVMLNKSFSKNFHKKEKKNFATSYCIDVEEVDNSKKS 477
Q +R RS P++++ + + + + + N+ +S +EV+NS +
Sbjct: 538 QLRRSITLAEFLPRSFLEDDPEEILEVTACHAASIVEVD-NNYGSS-----KEVNNSNEI 597
Query: 478 EQRTSVFDRIKPPTTRPSVFHRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSST 537
QRTSVFDRIKP TTR SVF R+S+ EEENQC TR S +RLS+ST KK R ST
Sbjct: 598 NQRTSVFDRIKPSTTRSSVFQRLSVATKEEENQCPTFIYTRTSTSKRLSISTLKKDRPST 657
Query: 538 SVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL 570
S FDRLK+TNDQ +R+M + + K F E N D K+HS +PSRMKRK V INTEGSL
Sbjct: 658 SSFDRLKMTNDQQQREMKSSKAKPFREENDDDKIHSCVPSRMKRKLFVDINTEGSL 706
BLAST of Lag0041578 vs. NCBI nr
Match:
TYK03695.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 580.5 bits (1495), Expect = 2.9e-161
Identity = 338/626 (53.99%), Postives = 403/626 (64.38%), Query Frame = 0
Query: 57 SQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGKGNPKQHIAHFVETCENAGT 116
+QYGGP Q LYSKPYTKRIDNLR P GYQPPKFQQFDGKGNPKQH+AHF+ETCE AGT
Sbjct: 177 TQYGGPAQTFSLYSKPYTKRIDNLRMPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGT 236
Query: 117 RGDLLVKQFVRTLKGNAFDWYTDLEPESLDSWEELEREFLNRFYSTRRTVSMFELTNTKQ 176
RGDLLVKQFVRTLKGNAFD Y DLEPES+D+WE+LER+FLNRFYSTRR VSM ELTNT+Q
Sbjct: 237 RGDLLVKQFVRTLKGNAFDLYMDLEPESIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQ 296
Query: 177 RKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQGMHWELLYILKGIKPRTFEELATRA 236
+KGELV++YINRWR +SLDCKDRLTELS+VEMC QGMHW LLYIL+GIKPRTFEELATRA
Sbjct: 297 QKGELVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRA 356
Query: 237 HDMELSIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTTLPKSSSKEKRQTN 296
HDMELSI ++ +D L+P R + +T I+ESMVV+ T KS SK K
Sbjct: 357 HDMELSIPNRGAKDFLIPKSRSDKNELNDTKKIANSVIKESMVVHATPLKSFSKRKETKI 416
Query: 297 GAHH---------FKGKTKKIYPFPDADIPDMLEQLLEAQLIKLPKCKRPEEMEKVDDPK 356
H K + +K+YPF D+D+ DMLEQLLE QLI+LPKCKRP++ EKVDDP
Sbjct: 417 ERKHDGDEKRQSTLKERQEKVYPFSDSDVADMLEQLLENQLIQLPKCKRPKQAEKVDDPN 476
Query: 357 YCKYHRVIDHQVERCFVLKDLILKLAMERKIELDLDEVAQSN------------------ 416
YCKYHRVI H VE+CFVLK+LILKLA E+KIEL++DEVAQ+N
Sbjct: 477 YCKYHRVISHPVEKCFVLKELILKLAREKKIELNIDEVAQTNHVAIEMTSNVPPLTQLDD 536
Query: 417 -----------------LATIKEKSKHQRKKD----------LKKLQP------------ 476
+ TI ++K KD K QP
Sbjct: 537 QRKSLIQFGTSILFQQRIVTINSQNKEAHGKDDDEGWITVTRQKGRQPNSIQKESQFHQK 596
Query: 477 ----------KRKRSKK-------------FSQPQQLVMLNKSFSKNF---HKKEKKNFA 536
K +R+KK F Q ++ + L + ++F H +E
Sbjct: 597 YAKGSISHKKKGRRNKKMWNPKPIKGKDEDFLQLRRSITLAEFLPRSFLEDHPEEILEVT 656
Query: 537 TSYCIDVEEVDNSKKS----------EQRTSVFDRIKPPTTRPSVFHRMSMVATEEENQC 574
T + + EV+N+ S QRTSVFDRIKP TTR SVF R+SM EEENQC
Sbjct: 657 TCHAASIVEVNNNYGSSKEVNNLNEINQRTSVFDRIKPSTTRSSVFQRLSMATKEEENQC 716
BLAST of Lag0041578 vs. NCBI nr
Match:
KAA0032121.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 521.2 bits (1341), Expect = 2.1e-143
Identity = 310/589 (52.63%), Postives = 383/589 (65.03%), Query Frame = 0
Query: 36 EPDSDVVTVMMTGTRTMEERM-----SQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPK 95
+P V+V + +++ + +QYGGP Q S +YSKPYTKRIDNLR P+GYQP K
Sbjct: 151 QPQQQSVSVASLSVQQLQDMIANSIRAQYGGPPQTSFMYSKPYTKRIDNLRMPLGYQPLK 210
Query: 96 FQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPESLDSWEE 155
FQQFDGKGNPKQHI HFVETCENAG+RGD LV+QFVR+LKGNAF+
Sbjct: 211 FQQFDGKGNPKQHIVHFVETCENAGSRGDQLVRQFVRSLKGNAFE--------------- 270
Query: 156 LEREFLNRFYSTRRTVSMFELTNTKQRKGELVVNYINRWRVMSLDCKDRLTELSSVEMCI 215
TRR VSM ELTNT QRKGE V++YINRWR +SLDCKD+LTELS+VEMC
Sbjct: 271 ----------CTRRVVSMMELTNT-QRKGEPVIDYINRWRALSLDCKDKLTELSAVEMCT 330
Query: 216 QGMHWELLYILKGIKPRTFEELATRAHDMELSIASQENQDLLLPNMRKEGRNDEET---- 275
QGMHWELLYIL+GIKPRTFEELATRAHDM+LSIA++ +D L+ R + +T
Sbjct: 331 QGMHWELLYILQGIKPRTFEELATRAHDMKLSIANRGVKDFLVQRTRSDKNEINDTKKIA 390
Query: 276 ---IEESMVVNTTLPKSSSKEKRQTNGAHH---------FKGKTKKIYPFPDADIPDMLE 335
+ ESM+V T KS SK K + +H + + KK+YPFPD+D+ DMLE
Sbjct: 391 NNVLNESMLVQETPLKSFSKRKETKHKRNHDGDEKRRPTLRERQKKVYPFPDSDVADMLE 450
Query: 336 QLLEAQLIKLPKCKRPEEMEKVDDPKYCKYHRVIDHQVERCFVLKDLILKLAMERKIELD 395
QL+E QLI+LP+CKRPE++ KVDDP YCKYHRVI H VE+CFVLK+LI KLA E KIELD
Sbjct: 451 QLIEKQLIQLPECKRPEQVGKVDDPNYCKYHRVISHLVEKCFVLKELIRKLARENKIELD 510
Query: 396 LDEVAQSNLATIKEKSK--------HQRKK---------DLKKLQPK--RKRSKKFSQPQ 455
+DEVAQ+N + S QRK L + Q K S+ +P
Sbjct: 511 IDEVAQTNHVAVNMTSSVPLSILLYDQRKSLIQFGTFEPILVRFQQKTMTSNSQNKEEPS 570
Query: 456 Q------LVMLNKSFSKNFHKK--EKKNFATSYCIDV-------EEVDNSKKSEQRTSVF 515
+ + L +SF ++ ++ E T+ ++V EE+DNS + +QRTSVF
Sbjct: 571 EDEGEEWIEFLPRSFLEDHPEEILEVTACHTTSIVEVDNNYDSYEEMDNSNEIKQRTSVF 630
Query: 516 DRIKPPTTRPSVFHRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLK 570
D IKP TTR SVF R+SM +EENQC T + SAF+RLS+S SKK R ST FDRLK
Sbjct: 631 DCIKPLTTRSSVFQRLSMATKKEENQCPTFTYAQTSAFKRLSISISKKHRPSTYTFDRLK 690
BLAST of Lag0041578 vs. NCBI nr
Match:
KAA0033746.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 511.5 bits (1316), Expect = 1.6e-140
Identity = 308/654 (47.09%), Postives = 381/654 (58.26%), Query Frame = 0
Query: 36 EPDSDVVTVMMTGTRTMEERM-----SQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPK 95
+P V+V + +++ + +QYGGP Q S +YSK YTKRIDNLR P+GYQPPK
Sbjct: 151 QPQQQSVSVASLSVQQLQDMIANSIRAQYGGPPQTSFMYSKSYTKRIDNLRMPLGYQPPK 210
Query: 96 FQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPESLDSWEE 155
FQQFDGKGNPKQHIAHFVETCENAG+RGD LV+QFVR+LKGNAF+WYTDLEPE
Sbjct: 211 FQQFDGKGNPKQHIAHFVETCENAGSRGDQLVRQFVRSLKGNAFEWYTDLEPE------- 270
Query: 156 LEREFLNRFYSTRRTVSMFELTNTKQRKGELVVNYINRWRVMSLDCKDRLTELSSVEMCI 215
GE V++YINRWR +SLDCKD+LTELS+VEMC
Sbjct: 271 ----------------------------GEPVIDYINRWRALSLDCKDKLTELSAVEMCT 330
Query: 216 QGMHWELLYILKGIKPRTFEELATRAHDMELSIASQENQDLLLPNMRKEGRND------- 275
QGMHWELLYIL+GIKPRTFEEL+TRAHDMELSIA+ +D L+ ++ +N+
Sbjct: 331 QGMHWELLYILQGIKPRTFEELSTRAHDMELSIANIGAKDFLVQRTKRSDKNEINDTKKI 390
Query: 276 -EETIEESMVVNTTLPKSSSKEKRQTNGAHHFKG----------KTKKIYPFPDADIPDM 335
+ ESM+V T KS SK K +T ++ G + KK+YPFPD+D+ DM
Sbjct: 391 ANNILNESMLVQETPLKSFSKRK-ETKHERNYDGDEKRRPTLRERQKKVYPFPDSDVADM 450
Query: 336 LEQLLEAQLIKLPKCKRPEEMEKVDDPKYCKYHRVIDHQVERCFVLKDLILKLAMERKIE 395
LEQL+E QLI+LP+CKRPE+ KVDDP YCKYHRVI H VE+CFVLK+LILKLA E KIE
Sbjct: 451 LEQLIEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLARENKIE 510
Query: 396 LDLDEVAQSN-------------------------------------------------- 455
LD+DEVAQ+N
Sbjct: 511 LDIDEVAQTNHVAVNMTSSVLPSILLYDQRESLIQFGTFEPILVRFQQKTMTSNSQNKEE 570
Query: 456 ----------------------------------LATIKEKSKHQRKKDLKKLQPKRKRS 515
I K K +R K + K +P + +
Sbjct: 571 TSEDEGEEWIGVTHKKERQIGSVQTNSNFHQKHSKGNISHKKKGRRNKKMWKPKPIKGKD 630
Query: 516 KKFSQPQQLVMLNKSFSKNFHKKEKKNFA------TSYCIDV-------EEVDNSKKSEQ 570
K F QP++ + L + ++F + + T+ ++V EEVDNS + +Q
Sbjct: 631 KDFFQPRRSINLAEFLPRSFLEDHPEKILEVTACHTTSIVEVDNNYDSYEEVDNSNEIKQ 690
BLAST of Lag0041578 vs. NCBI nr
Match:
KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])
HSP 1 Score: 502.7 bits (1293), Expect = 7.6e-138
Identity = 246/344 (71.51%), Postives = 287/344 (83.43%), Query Frame = 0
Query: 57 SQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGKGNPKQHIAHFVETCENAGT 116
+QYGGP Q LYSKPYTKRIDN+R P GYQPPKFQQFDGKGNPKQH+AHF+ETCE AGT
Sbjct: 177 TQYGGPAQTFSLYSKPYTKRIDNMRMPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGT 236
Query: 117 RGDLLVKQFVRTLKGNAFDWYTDLEPESLDSWEELEREFLNRFYSTRRTVSMFELTNTKQ 176
RGDLLVKQFVRTLKGNAFDWYTDLEPES+DSWE+LER+FLNRFYSTRR VSM ELT TKQ
Sbjct: 237 RGDLLVKQFVRTLKGNAFDWYTDLEPESIDSWEQLERDFLNRFYSTRRIVSMIELTATKQ 296
Query: 177 RKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQGMHWELLYILKGIKPRTFEELATRA 236
RKGE V++YINRWR +SLDCKDRLTELS+VEMC QGMHW LLYIL+GIKPRTFEELATRA
Sbjct: 297 RKGEPVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRA 356
Query: 237 HDMELSIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTT----LPKSSSKEK 296
HDMELSIA++ N DLL+P +RKE + + T +E+MVV+TT + K EK
Sbjct: 357 HDMELSIANRGNNDLLVPEVRKEKKEVKSTQKALKGVTKEAMVVSTTPLKLVSKEKKMEK 416
Query: 297 RQTNGAHH---FKGKTKKIYPFPDADIPDMLEQLLEAQLIKLPKCKRPEEMEKVDDPKYC 356
RQ G K + +K+YPFPD+D+PDML+QLLE QLI+LP+CKRP EM +V+DP YC
Sbjct: 417 RQDEGEKRRPTLKERQEKVYPFPDSDLPDMLDQLLEKQLIQLPECKRPAEMGRVNDPNYC 476
Query: 357 KYHRVIDHQVERCFVLKDLILKLAMERKIELDLDEVAQSNLATI 387
KYHRVI H VE+CFVLK+LILKLA+++KIEL+LD+VAQ+N A +
Sbjct: 477 KYHRVISHPVEKCFVLKELILKLALDKKIELELDDVAQTNHAAV 520
BLAST of Lag0041578 vs. ExPASy TrEMBL
Match:
A0A5A7URH1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17350G00010 PE=4 SV=1)
HSP 1 Score: 599.0 bits (1543), Expect = 3.8e-167
Identity = 330/536 (61.57%), Postives = 394/536 (73.51%), Query Frame = 0
Query: 58 QYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTR 117
QYGGP Q LY KPYTKRIDNLR P GYQPPKFQQFDGKGNPKQH+AHF++TCE AGTR
Sbjct: 178 QYGGPAQTFSLYFKPYTKRIDNLRMPNGYQPPKFQQFDGKGNPKQHVAHFIKTCETAGTR 237
Query: 118 GDLLVKQFVRTLKGNAFDWYTDLEPESLDSWEELEREFLNRFYSTRRTVSMFELTNTKQR 177
GDLLVKQFVRTLKGNA DWY DLEPES+D+WE+LER+FLNRFYSTR VSM ELTNT+Q+
Sbjct: 238 GDLLVKQFVRTLKGNACDWYIDLEPESIDNWEQLERDFLNRFYSTRHIVSMMELTNTRQQ 297
Query: 178 KGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQGMHWELLYILKGIKPRTFEELATRAH 237
KGELV++YINRWR +SLDCKDRLTELS+VEMC QGMHW LLYIL+GIKPRTFEELATRAH
Sbjct: 298 KGELVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAH 357
Query: 238 DMELSIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTTLPKSSSKEKRQTNG 297
DMELSIA++ +D L+P R + ++T I+ESMVV+ T KS SK K
Sbjct: 358 DMELSIANRGAKDFLIPKSRSDKNELDDTKKIANSVIKESMVVHATPLKSFSKRKETKIE 417
Query: 298 AHH---------FKGKTKKIYPFPDADIPDMLEQLLEAQLIKLPKCKRPEEMEKVDDPKY 357
H K + +K+YPFPD+D+ DMLEQLLE QLI+LP+CKRPE+ KVDDP Y
Sbjct: 418 RKHDGDEKRQSTLKERQEKVYPFPDSDVADMLEQLLENQLIQLPECKRPEQAGKVDDPNY 477
Query: 358 CKYHRVIDHQVERCFVLKDLILKLAMERKIELDLDEVAQSNLATIKEKSKHQRKKDLKKL 417
CKYHRVI H VE+CFVLK+LILKLA E+KIELD+DEVAQ+N A I+ S + KD L
Sbjct: 478 CKYHRVISHPVEKCFVLKELILKLAREKKIELDIDEVAQTNHA-IEMTSNPIKGKDEDFL 537
Query: 418 QPKRK--------RSKKFSQPQQLVMLNKSFSKNFHKKEKKNFATSYCIDVEEVDNSKKS 477
Q +R RS P++++ + + + + + N+ +S +EV+NS +
Sbjct: 538 QLRRSITLAEFLPRSFLEDDPEEILEVTACHAASIVEVD-NNYGSS-----KEVNNSNEI 597
Query: 478 EQRTSVFDRIKPPTTRPSVFHRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSST 537
QRTSVFDRIKP TTR SVF R+S+ EEENQC TR S +RLS+ST KK R ST
Sbjct: 598 NQRTSVFDRIKPSTTRSSVFQRLSVATKEEENQCPTFIYTRTSTSKRLSISTLKKDRPST 657
Query: 538 SVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL 570
S FDRLK+TNDQ +R+M + + K F E N D K+HS +PSRMKRK V INTEGSL
Sbjct: 658 SSFDRLKMTNDQQQREMKSSKAKPFREENDDDKIHSCVPSRMKRKLFVDINTEGSL 706
BLAST of Lag0041578 vs. ExPASy TrEMBL
Match:
A0A5D3BX77 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00570 PE=4 SV=1)
HSP 1 Score: 580.5 bits (1495), Expect = 1.4e-161
Identity = 338/626 (53.99%), Postives = 403/626 (64.38%), Query Frame = 0
Query: 57 SQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGKGNPKQHIAHFVETCENAGT 116
+QYGGP Q LYSKPYTKRIDNLR P GYQPPKFQQFDGKGNPKQH+AHF+ETCE AGT
Sbjct: 177 TQYGGPAQTFSLYSKPYTKRIDNLRMPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGT 236
Query: 117 RGDLLVKQFVRTLKGNAFDWYTDLEPESLDSWEELEREFLNRFYSTRRTVSMFELTNTKQ 176
RGDLLVKQFVRTLKGNAFD Y DLEPES+D+WE+LER+FLNRFYSTRR VSM ELTNT+Q
Sbjct: 237 RGDLLVKQFVRTLKGNAFDLYMDLEPESIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQ 296
Query: 177 RKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQGMHWELLYILKGIKPRTFEELATRA 236
+KGELV++YINRWR +SLDCKDRLTELS+VEMC QGMHW LLYIL+GIKPRTFEELATRA
Sbjct: 297 QKGELVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRA 356
Query: 237 HDMELSIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTTLPKSSSKEKRQTN 296
HDMELSI ++ +D L+P R + +T I+ESMVV+ T KS SK K
Sbjct: 357 HDMELSIPNRGAKDFLIPKSRSDKNELNDTKKIANSVIKESMVVHATPLKSFSKRKETKI 416
Query: 297 GAHH---------FKGKTKKIYPFPDADIPDMLEQLLEAQLIKLPKCKRPEEMEKVDDPK 356
H K + +K+YPF D+D+ DMLEQLLE QLI+LPKCKRP++ EKVDDP
Sbjct: 417 ERKHDGDEKRQSTLKERQEKVYPFSDSDVADMLEQLLENQLIQLPKCKRPKQAEKVDDPN 476
Query: 357 YCKYHRVIDHQVERCFVLKDLILKLAMERKIELDLDEVAQSN------------------ 416
YCKYHRVI H VE+CFVLK+LILKLA E+KIEL++DEVAQ+N
Sbjct: 477 YCKYHRVISHPVEKCFVLKELILKLAREKKIELNIDEVAQTNHVAIEMTSNVPPLTQLDD 536
Query: 417 -----------------LATIKEKSKHQRKKD----------LKKLQP------------ 476
+ TI ++K KD K QP
Sbjct: 537 QRKSLIQFGTSILFQQRIVTINSQNKEAHGKDDDEGWITVTRQKGRQPNSIQKESQFHQK 596
Query: 477 ----------KRKRSKK-------------FSQPQQLVMLNKSFSKNF---HKKEKKNFA 536
K +R+KK F Q ++ + L + ++F H +E
Sbjct: 597 YAKGSISHKKKGRRNKKMWNPKPIKGKDEDFLQLRRSITLAEFLPRSFLEDHPEEILEVT 656
Query: 537 TSYCIDVEEVDNSKKS----------EQRTSVFDRIKPPTTRPSVFHRMSMVATEEENQC 574
T + + EV+N+ S QRTSVFDRIKP TTR SVF R+SM EEENQC
Sbjct: 657 TCHAASIVEVNNNYGSSKEVNNLNEINQRTSVFDRIKPSTTRSSVFQRLSMATKEEENQC 716
BLAST of Lag0041578 vs. ExPASy TrEMBL
Match:
A0A5A7SRE2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold452G00210 PE=4 SV=1)
HSP 1 Score: 521.2 bits (1341), Expect = 1.0e-143
Identity = 310/589 (52.63%), Postives = 383/589 (65.03%), Query Frame = 0
Query: 36 EPDSDVVTVMMTGTRTMEERM-----SQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPK 95
+P V+V + +++ + +QYGGP Q S +YSKPYTKRIDNLR P+GYQP K
Sbjct: 151 QPQQQSVSVASLSVQQLQDMIANSIRAQYGGPPQTSFMYSKPYTKRIDNLRMPLGYQPLK 210
Query: 96 FQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPESLDSWEE 155
FQQFDGKGNPKQHI HFVETCENAG+RGD LV+QFVR+LKGNAF+
Sbjct: 211 FQQFDGKGNPKQHIVHFVETCENAGSRGDQLVRQFVRSLKGNAFE--------------- 270
Query: 156 LEREFLNRFYSTRRTVSMFELTNTKQRKGELVVNYINRWRVMSLDCKDRLTELSSVEMCI 215
TRR VSM ELTNT QRKGE V++YINRWR +SLDCKD+LTELS+VEMC
Sbjct: 271 ----------CTRRVVSMMELTNT-QRKGEPVIDYINRWRALSLDCKDKLTELSAVEMCT 330
Query: 216 QGMHWELLYILKGIKPRTFEELATRAHDMELSIASQENQDLLLPNMRKEGRNDEET---- 275
QGMHWELLYIL+GIKPRTFEELATRAHDM+LSIA++ +D L+ R + +T
Sbjct: 331 QGMHWELLYILQGIKPRTFEELATRAHDMKLSIANRGVKDFLVQRTRSDKNEINDTKKIA 390
Query: 276 ---IEESMVVNTTLPKSSSKEKRQTNGAHH---------FKGKTKKIYPFPDADIPDMLE 335
+ ESM+V T KS SK K + +H + + KK+YPFPD+D+ DMLE
Sbjct: 391 NNVLNESMLVQETPLKSFSKRKETKHKRNHDGDEKRRPTLRERQKKVYPFPDSDVADMLE 450
Query: 336 QLLEAQLIKLPKCKRPEEMEKVDDPKYCKYHRVIDHQVERCFVLKDLILKLAMERKIELD 395
QL+E QLI+LP+CKRPE++ KVDDP YCKYHRVI H VE+CFVLK+LI KLA E KIELD
Sbjct: 451 QLIEKQLIQLPECKRPEQVGKVDDPNYCKYHRVISHLVEKCFVLKELIRKLARENKIELD 510
Query: 396 LDEVAQSNLATIKEKSK--------HQRKK---------DLKKLQPK--RKRSKKFSQPQ 455
+DEVAQ+N + S QRK L + Q K S+ +P
Sbjct: 511 IDEVAQTNHVAVNMTSSVPLSILLYDQRKSLIQFGTFEPILVRFQQKTMTSNSQNKEEPS 570
Query: 456 Q------LVMLNKSFSKNFHKK--EKKNFATSYCIDV-------EEVDNSKKSEQRTSVF 515
+ + L +SF ++ ++ E T+ ++V EE+DNS + +QRTSVF
Sbjct: 571 EDEGEEWIEFLPRSFLEDHPEEILEVTACHTTSIVEVDNNYDSYEEMDNSNEIKQRTSVF 630
Query: 516 DRIKPPTTRPSVFHRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLK 570
D IKP TTR SVF R+SM +EENQC T + SAF+RLS+S SKK R ST FDRLK
Sbjct: 631 DCIKPLTTRSSVFQRLSMATKKEENQCPTFTYAQTSAFKRLSISISKKHRPSTYTFDRLK 690
BLAST of Lag0041578 vs. ExPASy TrEMBL
Match:
A0A5A7SUW1 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G002250 PE=4 SV=1)
HSP 1 Score: 511.5 bits (1316), Expect = 8.0e-141
Identity = 308/654 (47.09%), Postives = 381/654 (58.26%), Query Frame = 0
Query: 36 EPDSDVVTVMMTGTRTMEERM-----SQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPK 95
+P V+V + +++ + +QYGGP Q S +YSK YTKRIDNLR P+GYQPPK
Sbjct: 151 QPQQQSVSVASLSVQQLQDMIANSIRAQYGGPPQTSFMYSKSYTKRIDNLRMPLGYQPPK 210
Query: 96 FQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPESLDSWEE 155
FQQFDGKGNPKQHIAHFVETCENAG+RGD LV+QFVR+LKGNAF+WYTDLEPE
Sbjct: 211 FQQFDGKGNPKQHIAHFVETCENAGSRGDQLVRQFVRSLKGNAFEWYTDLEPE------- 270
Query: 156 LEREFLNRFYSTRRTVSMFELTNTKQRKGELVVNYINRWRVMSLDCKDRLTELSSVEMCI 215
GE V++YINRWR +SLDCKD+LTELS+VEMC
Sbjct: 271 ----------------------------GEPVIDYINRWRALSLDCKDKLTELSAVEMCT 330
Query: 216 QGMHWELLYILKGIKPRTFEELATRAHDMELSIASQENQDLLLPNMRKEGRND------- 275
QGMHWELLYIL+GIKPRTFEEL+TRAHDMELSIA+ +D L+ ++ +N+
Sbjct: 331 QGMHWELLYILQGIKPRTFEELSTRAHDMELSIANIGAKDFLVQRTKRSDKNEINDTKKI 390
Query: 276 -EETIEESMVVNTTLPKSSSKEKRQTNGAHHFKG----------KTKKIYPFPDADIPDM 335
+ ESM+V T KS SK K +T ++ G + KK+YPFPD+D+ DM
Sbjct: 391 ANNILNESMLVQETPLKSFSKRK-ETKHERNYDGDEKRRPTLRERQKKVYPFPDSDVADM 450
Query: 336 LEQLLEAQLIKLPKCKRPEEMEKVDDPKYCKYHRVIDHQVERCFVLKDLILKLAMERKIE 395
LEQL+E QLI+LP+CKRPE+ KVDDP YCKYHRVI H VE+CFVLK+LILKLA E KIE
Sbjct: 451 LEQLIEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLARENKIE 510
Query: 396 LDLDEVAQSN-------------------------------------------------- 455
LD+DEVAQ+N
Sbjct: 511 LDIDEVAQTNHVAVNMTSSVLPSILLYDQRESLIQFGTFEPILVRFQQKTMTSNSQNKEE 570
Query: 456 ----------------------------------LATIKEKSKHQRKKDLKKLQPKRKRS 515
I K K +R K + K +P + +
Sbjct: 571 TSEDEGEEWIGVTHKKERQIGSVQTNSNFHQKHSKGNISHKKKGRRNKKMWKPKPIKGKD 630
Query: 516 KKFSQPQQLVMLNKSFSKNFHKKEKKNFA------TSYCIDV-------EEVDNSKKSEQ 570
K F QP++ + L + ++F + + T+ ++V EEVDNS + +Q
Sbjct: 631 KDFFQPRRSINLAEFLPRSFLEDHPEKILEVTACHTTSIVEVDNNYDSYEEVDNSNEIKQ 690
BLAST of Lag0041578 vs. ExPASy TrEMBL
Match:
A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)
HSP 1 Score: 502.7 bits (1293), Expect = 3.7e-138
Identity = 246/344 (71.51%), Postives = 287/344 (83.43%), Query Frame = 0
Query: 57 SQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGKGNPKQHIAHFVETCENAGT 116
+QYGGP Q LYSKPYTKRIDN+R P GYQPPKFQQFDGKGNPKQH+AHF+ETCE AGT
Sbjct: 177 TQYGGPAQTFSLYSKPYTKRIDNMRMPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGT 236
Query: 117 RGDLLVKQFVRTLKGNAFDWYTDLEPESLDSWEELEREFLNRFYSTRRTVSMFELTNTKQ 176
RGDLLVKQFVRTLKGNAFDWYTDLEPES+DSWE+LER+FLNRFYSTRR VSM ELT TKQ
Sbjct: 237 RGDLLVKQFVRTLKGNAFDWYTDLEPESIDSWEQLERDFLNRFYSTRRIVSMIELTATKQ 296
Query: 177 RKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQGMHWELLYILKGIKPRTFEELATRA 236
RKGE V++YINRWR +SLDCKDRLTELS+VEMC QGMHW LLYIL+GIKPRTFEELATRA
Sbjct: 297 RKGEPVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRA 356
Query: 237 HDMELSIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTT----LPKSSSKEK 296
HDMELSIA++ N DLL+P +RKE + + T +E+MVV+TT + K EK
Sbjct: 357 HDMELSIANRGNNDLLVPEVRKEKKEVKSTQKALKGVTKEAMVVSTTPLKLVSKEKKMEK 416
Query: 297 RQTNGAHH---FKGKTKKIYPFPDADIPDMLEQLLEAQLIKLPKCKRPEEMEKVDDPKYC 356
RQ G K + +K+YPFPD+D+PDML+QLLE QLI+LP+CKRP EM +V+DP YC
Sbjct: 417 RQDEGEKRRPTLKERQEKVYPFPDSDLPDMLDQLLEKQLIQLPECKRPAEMGRVNDPNYC 476
Query: 357 KYHRVIDHQVERCFVLKDLILKLAMERKIELDLDEVAQSNLATI 387
KYHRVI H VE+CFVLK+LILKLA+++KIEL+LD+VAQ+N A +
Sbjct: 477 KYHRVISHPVEKCFVLKELILKLALDKKIELELDDVAQTNHAAV 520
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0056121.1 | 7.8e-167 | 61.57 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
TYK03695.1 | 2.9e-161 | 53.99 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
KAA0032121.1 | 2.1e-143 | 52.63 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0033746.1 | 1.6e-140 | 47.09 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
KAA0047477.1 | 7.6e-138 | 71.51 | uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa] | [more] |
Pages
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7URH1 | 3.8e-167 | 61.57 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5D3BX77 | 1.4e-161 | 53.99 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
A0A5A7SRE2 | 1.0e-143 | 52.63 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5A7SUW1 | 8.0e-141 | 47.09 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
A0A5A7TZU9 | 3.7e-138 | 71.51 | Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940... | [more] |
Pages
Match Name | E-value | Identity | Description | |