Lag0041578 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0041578
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationchr13: 21081102 .. 21084822 (+)
RNA-Seq ExpressionLag0041578
SyntenyLag0041578
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGTTGCAAGAAGATAAAGCTTCTATCGCTGGAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAATTTCTTGCTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGGGACTAGAACTATGGAAGAAAGAATGGTTGAGATGCAGGAGCACACGACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGAGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCGTAAAAAATCACGGCAAAGGAAATACTATAGTGCAAGATGATCAACCACAGTGTTCTGCTTCGATCGCTTCACTATCCATCCAACAGCTCCAAGATATGATCACAAACTGTATTAGAGCCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTATTCCAAACCTTATACTAAGAGGATTGATAACTTGAGAACGCCAATCGGGTATCAGCCACCAAAATTTCAGCAGTTTGATGGAAAAGGCAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAGGGGACCTACTAGTCAAGCAGTTCGTTCGAACACTTAAAGGAAATGCTTTTGACTGGTACACTGATCTAGAACCTGAGTCATTAGACAGTTGGGAGGAACTCGAAAGAGAGTTTTTGAATCGCTTCTACAGCACTAGAAGAACCGTTAGCATGTTCGAGCTCACCAACACTAAACAACGAAAAGGTGAACTCGTTGTTAACTATATAAATCGCTGGAGAGTCATGAGTCTAGATTGCAAAGATCGTCTCACTGAACTCTCTTCCGTCGAGATGTGCATTCAAGGCATGCACTGGGAACTCCTCTACATCCTTAAAGGTATAAAACCTCGCACCTTTGAAGAACTAGCAACTCGCGCCCACGATATGGAACTAAGTATTGCTAGCCAAGAAAACCAAGACCTTCTCCTCCCTAACATGAGAAAAGAAGGAAGGAACGATGAAGAGACTATAGAAGAATCCATGGTTGTAAACACAACCCTTCCCAAGTCGTCTTCGAAAGAAAAGCGACAAACTAATGGAGCGCATCACTTTAAAGGAAAGACAAAGAAAATCTATCCTTTCCCTGATGCCGACATCCCTGATATGTTGGAACAACTATTGGAAGCGCAACTGATAAAGCTTCCTAAGTGTAAACGACCAGAAGAGATGGAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTATTGATCATCAAGTGGAAAGATGTTTCGTCCTAAAGGACTTAATCCTAAAGCTGGCTATGGAAAGAAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGAAAAGAGCAAACATCAAAGAAAGAAGGATCTTAAGAAACTTCAACCCAAGAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCCTTCTCCAAAAATTTCCACAAAAAGGAAAAAAAGAACTTTGCGACTTCGTACTGTATCGACGTAGAAGAAGTTGACAATTCTAAGAAGAGTGAACAAAGGACTTCCGTCTTTGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCATAGAATGAGTATGGTCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCAGAATCTCATTATCTTGACCAATCCTGCAAATGAAGGATCTGATCAAGACCATGACAAAGATAAGAGCTTTTAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGAGCAAAAATCTTGAACTACGTTATGACTTGATCCCTATTCCATAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTCTATAAACAAAAAAAAAAAGGTTATTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCATTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGTGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTTTCAAGGTCGAAGGTTCTCACTCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGTAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTTGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTTACGCGCTTTGCTGCAGTTCCTTCCTCACAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCTTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCAAGCGCTGTGATTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCACTTCGTTGCTCCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCCTCTCTCCACTGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGACGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTACTCCTTCTTCAAGTTCGAAGGCGTTTCTCTCCAGCTGCTCCTTCTCCAAGTTCAAAGGCGCTTCCCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCAAAGGTGCTTCTCTCCACCCCTTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGCAGTTGACGGCGTTCGCTTCGCTTCATCTTCAAAAATTGGCTGTTGA

mRNA sequence

ATGACGTTGCAAGAAGATAAAGCTTCTATCGCTGGAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAATTTCTTGCTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGGGACTAGAACTATGGAAGAAAGAATGAGCCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTATTCCAAACCTTATACTAAGAGGATTGATAACTTGAGAACGCCAATCGGGTATCAGCCACCAAAATTTCAGCAGTTTGATGGAAAAGGCAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAGGGGACCTACTAGTCAAGCAGTTCGTTCGAACACTTAAAGGAAATGCTTTTGACTGGTACACTGATCTAGAACCTGAGTCATTAGACAGTTGGGAGGAACTCGAAAGAGAGTTTTTGAATCGCTTCTACAGCACTAGAAGAACCGTTAGCATGTTCGAGCTCACCAACACTAAACAACGAAAAGGTGAACTCGTTGTTAACTATATAAATCGCTGGAGAGTCATGAGTCTAGATTGCAAAGATCGTCTCACTGAACTCTCTTCCGTCGAGATGTGCATTCAAGGCATGCACTGGGAACTCCTCTACATCCTTAAAGGTATAAAACCTCGCACCTTTGAAGAACTAGCAACTCGCGCCCACGATATGGAACTAAGTATTGCTAGCCAAGAAAACCAAGACCTTCTCCTCCCTAACATGAGAAAAGAAGGAAGGAACGATGAAGAGACTATAGAAGAATCCATGGTTGTAAACACAACCCTTCCCAAGTCGTCTTCGAAAGAAAAGCGACAAACTAATGGAGCGCATCACTTTAAAGGAAAGACAAAGAAAATCTATCCTTTCCCTGATGCCGACATCCCTGATATGTTGGAACAACTATTGGAAGCGCAACTGATAAAGCTTCCTAAGTGTAAACGACCAGAAGAGATGGAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTATTGATCATCAAGTGGAAAGATGTTTCGTCCTAAAGGACTTAATCCTAAAGCTGGCTATGGAAAGAAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGAAAAGAGCAAACATCAAAGAAAGAAGGATCTTAAGAAACTTCAACCCAAGAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCCTTCTCCAAAAATTTCCACAAAAAGGAAAAAAAGAACTTTGCGACTTCGTACTGTATCGACGTAGAAGAAGTTGACAATTCTAAGAAGAGTGAACAAAGGACTTCCGTCTTTGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCATAGAATGAGTATGGTCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCATTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGTGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTTTCAAGGTCGAAGGTTCTCACTCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGTAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTTACGCGCTTTGCTGCAGTTCCTTCCTCACAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCTTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCAAGCGCTGTGATTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCACTTCGTTGCTCCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCCTCTCTCCACTGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGACGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTACTCCTTCTTCAAGTTCGAAGGCGTTTCTCTCCAGCTGCTCCTTCTCCAAGTTCAAAGGCGCTTCCCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCAAAGGTGCTTCTCTCCACCCCTTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGCAGTTGACGGCGTTCGCTTCGCTTCATCTTCAAAAATTGGCTGTTGA

Coding sequence (CDS)

ATGACGTTGCAAGAAGATAAAGCTTCTATCGCTGGAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAATTTCTTGCTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGGGACTAGAACTATGGAAGAAAGAATGAGCCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTATTCCAAACCTTATACTAAGAGGATTGATAACTTGAGAACGCCAATCGGGTATCAGCCACCAAAATTTCAGCAGTTTGATGGAAAAGGCAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAGGGGACCTACTAGTCAAGCAGTTCGTTCGAACACTTAAAGGAAATGCTTTTGACTGGTACACTGATCTAGAACCTGAGTCATTAGACAGTTGGGAGGAACTCGAAAGAGAGTTTTTGAATCGCTTCTACAGCACTAGAAGAACCGTTAGCATGTTCGAGCTCACCAACACTAAACAACGAAAAGGTGAACTCGTTGTTAACTATATAAATCGCTGGAGAGTCATGAGTCTAGATTGCAAAGATCGTCTCACTGAACTCTCTTCCGTCGAGATGTGCATTCAAGGCATGCACTGGGAACTCCTCTACATCCTTAAAGGTATAAAACCTCGCACCTTTGAAGAACTAGCAACTCGCGCCCACGATATGGAACTAAGTATTGCTAGCCAAGAAAACCAAGACCTTCTCCTCCCTAACATGAGAAAAGAAGGAAGGAACGATGAAGAGACTATAGAAGAATCCATGGTTGTAAACACAACCCTTCCCAAGTCGTCTTCGAAAGAAAAGCGACAAACTAATGGAGCGCATCACTTTAAAGGAAAGACAAAGAAAATCTATCCTTTCCCTGATGCCGACATCCCTGATATGTTGGAACAACTATTGGAAGCGCAACTGATAAAGCTTCCTAAGTGTAAACGACCAGAAGAGATGGAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTATTGATCATCAAGTGGAAAGATGTTTCGTCCTAAAGGACTTAATCCTAAAGCTGGCTATGGAAAGAAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGAAAAGAGCAAACATCAAAGAAAGAAGGATCTTAAGAAACTTCAACCCAAGAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCCTTCTCCAAAAATTTCCACAAAAAGGAAAAAAAGAACTTTGCGACTTCGTACTGTATCGACGTAGAAGAAGTTGACAATTCTAAGAAGAGTGAACAAAGGACTTCCGTCTTTGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCATAGAATGAGTATGGTCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCATTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGTGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTTTCAAGGTCGAAGGTTCTCACTCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGTAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTTACGCGCTTTGCTGCAGTTCCTTCCTCACAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCTTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCAAGCGCTGTGATTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCACTTCGTTGCTCCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCCTCTCTCCACTGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGACGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTACTCCTTCTTCAAGTTCGAAGGCGTTTCTCTCCAGCTGCTCCTTCTCCAAGTTCAAAGGCGCTTCCCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCAAAGGTGCTTCTCTCCACCCCTTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGCAGTTGACGGCGTTCGCTTCGCTTCATCTTCAAAAATTGGCTGTTGA

Protein sequence

MTLQEDKASIAGGQETTLQGAYTNDKFLAKYNPLFEPDSDVVTVMMTGTRTMEERMSQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPESLDSWEELEREFLNRFYSTRRTVSMFELTNTKQRKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQGMHWELLYILKGIKPRTFEELATRAHDMELSIASQENQDLLLPNMRKEGRNDEETIEESMVVNTTLPKSSSKEKRQTNGAHHFKGKTKKIYPFPDADIPDMLEQLLEAQLIKLPKCKRPEEMEKVDDPKYCKYHRVIDHQVERCFVLKDLILKLAMERKIELDLDEVAQSNLATIKEKSKHQRKKDLKKLQPKRKRSKKFSQPQQLVMLNKSFSKNFHKKEKKNFATSYCIDVEEVDNSKKSEQRTSVFDRIKPPTTRPSVFHRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKFLLSKFEGPYTVRYCVVPSPSSKVLRCILLRCSFSKFEGSQLYDCYVVPPPSVKDLMWCVVALFPLLSSSMVLTQLCWSFFSPSSKVLTRSVAVPSFKVEGSHSLRCSSFSPSSKVHALRCSSFSQIRRFSRASLQFLPPSSKVLTRFAAVPSSQFKGSHALRCSSFPQVRRFSRRFAAVPSSKFEGSHIASLRAALRCSSFLQVRRFSLASLQFLPPNSKVSKVLKRCDSLQFLPPSSKVLMHFVAPSSKFEGSLTRCCSSFLQVRRFPHALRSLLLQVRRRLSPLFLPPSSKVLMRFVATFLQVRRFSHALLQLLPPSSKVPSRASLAPSPSSKTLLSTAPSPSSKALLSTTPSSSSKAFLSSCSFSKFKGASLHCSFSKFEGASLYCSFSKFKGASLHPFFEGSPLRFSFSKFEGSPLLLFKCLAAVDVLVPLHLQMLAVDGVRFASSSKIGC
Homology
BLAST of Lag0041578 vs. NCBI nr
Match: KAA0056121.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 599.0 bits (1543), Expect = 7.8e-167
Identity = 330/536 (61.57%), Postives = 394/536 (73.51%), Query Frame = 0

Query: 58  QYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTR 117
           QYGGP Q   LY KPYTKRIDNLR P GYQPPKFQQFDGKGNPKQH+AHF++TCE AGTR
Sbjct: 178 QYGGPAQTFSLYFKPYTKRIDNLRMPNGYQPPKFQQFDGKGNPKQHVAHFIKTCETAGTR 237

Query: 118 GDLLVKQFVRTLKGNAFDWYTDLEPESLDSWEELEREFLNRFYSTRRTVSMFELTNTKQR 177
           GDLLVKQFVRTLKGNA DWY DLEPES+D+WE+LER+FLNRFYSTR  VSM ELTNT+Q+
Sbjct: 238 GDLLVKQFVRTLKGNACDWYIDLEPESIDNWEQLERDFLNRFYSTRHIVSMMELTNTRQQ 297

Query: 178 KGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQGMHWELLYILKGIKPRTFEELATRAH 237
           KGELV++YINRWR +SLDCKDRLTELS+VEMC QGMHW LLYIL+GIKPRTFEELATRAH
Sbjct: 298 KGELVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAH 357

Query: 238 DMELSIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTTLPKSSSKEKRQTNG 297
           DMELSIA++  +D L+P  R +    ++T       I+ESMVV+ T  KS SK K     
Sbjct: 358 DMELSIANRGAKDFLIPKSRSDKNELDDTKKIANSVIKESMVVHATPLKSFSKRKETKIE 417

Query: 298 AHH---------FKGKTKKIYPFPDADIPDMLEQLLEAQLIKLPKCKRPEEMEKVDDPKY 357
             H          K + +K+YPFPD+D+ DMLEQLLE QLI+LP+CKRPE+  KVDDP Y
Sbjct: 418 RKHDGDEKRQSTLKERQEKVYPFPDSDVADMLEQLLENQLIQLPECKRPEQAGKVDDPNY 477

Query: 358 CKYHRVIDHQVERCFVLKDLILKLAMERKIELDLDEVAQSNLATIKEKSKHQRKKDLKKL 417
           CKYHRVI H VE+CFVLK+LILKLA E+KIELD+DEVAQ+N A I+  S   + KD   L
Sbjct: 478 CKYHRVISHPVEKCFVLKELILKLAREKKIELDIDEVAQTNHA-IEMTSNPIKGKDEDFL 537

Query: 418 QPKRK--------RSKKFSQPQQLVMLNKSFSKNFHKKEKKNFATSYCIDVEEVDNSKKS 477
           Q +R         RS     P++++ +    + +  + +  N+ +S     +EV+NS + 
Sbjct: 538 QLRRSITLAEFLPRSFLEDDPEEILEVTACHAASIVEVD-NNYGSS-----KEVNNSNEI 597

Query: 478 EQRTSVFDRIKPPTTRPSVFHRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSST 537
            QRTSVFDRIKP TTR SVF R+S+   EEENQC     TR S  +RLS+ST KK R ST
Sbjct: 598 NQRTSVFDRIKPSTTRSSVFQRLSVATKEEENQCPTFIYTRTSTSKRLSISTLKKDRPST 657

Query: 538 SVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL 570
           S FDRLK+TNDQ +R+M + + K F E N D K+HS +PSRMKRK  V INTEGSL
Sbjct: 658 SSFDRLKMTNDQQQREMKSSKAKPFREENDDDKIHSCVPSRMKRKLFVDINTEGSL 706

BLAST of Lag0041578 vs. NCBI nr
Match: TYK03695.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 580.5 bits (1495), Expect = 2.9e-161
Identity = 338/626 (53.99%), Postives = 403/626 (64.38%), Query Frame = 0

Query: 57  SQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGKGNPKQHIAHFVETCENAGT 116
           +QYGGP Q   LYSKPYTKRIDNLR P GYQPPKFQQFDGKGNPKQH+AHF+ETCE AGT
Sbjct: 177 TQYGGPAQTFSLYSKPYTKRIDNLRMPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGT 236

Query: 117 RGDLLVKQFVRTLKGNAFDWYTDLEPESLDSWEELEREFLNRFYSTRRTVSMFELTNTKQ 176
           RGDLLVKQFVRTLKGNAFD Y DLEPES+D+WE+LER+FLNRFYSTRR VSM ELTNT+Q
Sbjct: 237 RGDLLVKQFVRTLKGNAFDLYMDLEPESIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQ 296

Query: 177 RKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQGMHWELLYILKGIKPRTFEELATRA 236
           +KGELV++YINRWR +SLDCKDRLTELS+VEMC QGMHW LLYIL+GIKPRTFEELATRA
Sbjct: 297 QKGELVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRA 356

Query: 237 HDMELSIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTTLPKSSSKEKRQTN 296
           HDMELSI ++  +D L+P  R +     +T       I+ESMVV+ T  KS SK K    
Sbjct: 357 HDMELSIPNRGAKDFLIPKSRSDKNELNDTKKIANSVIKESMVVHATPLKSFSKRKETKI 416

Query: 297 GAHH---------FKGKTKKIYPFPDADIPDMLEQLLEAQLIKLPKCKRPEEMEKVDDPK 356
              H          K + +K+YPF D+D+ DMLEQLLE QLI+LPKCKRP++ EKVDDP 
Sbjct: 417 ERKHDGDEKRQSTLKERQEKVYPFSDSDVADMLEQLLENQLIQLPKCKRPKQAEKVDDPN 476

Query: 357 YCKYHRVIDHQVERCFVLKDLILKLAMERKIELDLDEVAQSN------------------ 416
           YCKYHRVI H VE+CFVLK+LILKLA E+KIEL++DEVAQ+N                  
Sbjct: 477 YCKYHRVISHPVEKCFVLKELILKLAREKKIELNIDEVAQTNHVAIEMTSNVPPLTQLDD 536

Query: 417 -----------------LATIKEKSKHQRKKD----------LKKLQP------------ 476
                            + TI  ++K    KD           K  QP            
Sbjct: 537 QRKSLIQFGTSILFQQRIVTINSQNKEAHGKDDDEGWITVTRQKGRQPNSIQKESQFHQK 596

Query: 477 ----------KRKRSKK-------------FSQPQQLVMLNKSFSKNF---HKKEKKNFA 536
                     K +R+KK             F Q ++ + L +   ++F   H +E     
Sbjct: 597 YAKGSISHKKKGRRNKKMWNPKPIKGKDEDFLQLRRSITLAEFLPRSFLEDHPEEILEVT 656

Query: 537 TSYCIDVEEVDNSKKS----------EQRTSVFDRIKPPTTRPSVFHRMSMVATEEENQC 574
           T +   + EV+N+  S           QRTSVFDRIKP TTR SVF R+SM   EEENQC
Sbjct: 657 TCHAASIVEVNNNYGSSKEVNNLNEINQRTSVFDRIKPSTTRSSVFQRLSMATKEEENQC 716

BLAST of Lag0041578 vs. NCBI nr
Match: KAA0032121.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 521.2 bits (1341), Expect = 2.1e-143
Identity = 310/589 (52.63%), Postives = 383/589 (65.03%), Query Frame = 0

Query: 36  EPDSDVVTVMMTGTRTMEERM-----SQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPK 95
           +P    V+V     + +++ +     +QYGGP Q S +YSKPYTKRIDNLR P+GYQP K
Sbjct: 151 QPQQQSVSVASLSVQQLQDMIANSIRAQYGGPPQTSFMYSKPYTKRIDNLRMPLGYQPLK 210

Query: 96  FQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPESLDSWEE 155
           FQQFDGKGNPKQHI HFVETCENAG+RGD LV+QFVR+LKGNAF+               
Sbjct: 211 FQQFDGKGNPKQHIVHFVETCENAGSRGDQLVRQFVRSLKGNAFE--------------- 270

Query: 156 LEREFLNRFYSTRRTVSMFELTNTKQRKGELVVNYINRWRVMSLDCKDRLTELSSVEMCI 215
                      TRR VSM ELTNT QRKGE V++YINRWR +SLDCKD+LTELS+VEMC 
Sbjct: 271 ----------CTRRVVSMMELTNT-QRKGEPVIDYINRWRALSLDCKDKLTELSAVEMCT 330

Query: 216 QGMHWELLYILKGIKPRTFEELATRAHDMELSIASQENQDLLLPNMRKEGRNDEET---- 275
           QGMHWELLYIL+GIKPRTFEELATRAHDM+LSIA++  +D L+   R +     +T    
Sbjct: 331 QGMHWELLYILQGIKPRTFEELATRAHDMKLSIANRGVKDFLVQRTRSDKNEINDTKKIA 390

Query: 276 ---IEESMVVNTTLPKSSSKEKRQTNGAHH---------FKGKTKKIYPFPDADIPDMLE 335
              + ESM+V  T  KS SK K   +  +H          + + KK+YPFPD+D+ DMLE
Sbjct: 391 NNVLNESMLVQETPLKSFSKRKETKHKRNHDGDEKRRPTLRERQKKVYPFPDSDVADMLE 450

Query: 336 QLLEAQLIKLPKCKRPEEMEKVDDPKYCKYHRVIDHQVERCFVLKDLILKLAMERKIELD 395
           QL+E QLI+LP+CKRPE++ KVDDP YCKYHRVI H VE+CFVLK+LI KLA E KIELD
Sbjct: 451 QLIEKQLIQLPECKRPEQVGKVDDPNYCKYHRVISHLVEKCFVLKELIRKLARENKIELD 510

Query: 396 LDEVAQSNLATIKEKSK--------HQRKK---------DLKKLQPK--RKRSKKFSQPQ 455
           +DEVAQ+N   +   S          QRK           L + Q K     S+   +P 
Sbjct: 511 IDEVAQTNHVAVNMTSSVPLSILLYDQRKSLIQFGTFEPILVRFQQKTMTSNSQNKEEPS 570

Query: 456 Q------LVMLNKSFSKNFHKK--EKKNFATSYCIDV-------EEVDNSKKSEQRTSVF 515
           +      +  L +SF ++  ++  E     T+  ++V       EE+DNS + +QRTSVF
Sbjct: 571 EDEGEEWIEFLPRSFLEDHPEEILEVTACHTTSIVEVDNNYDSYEEMDNSNEIKQRTSVF 630

Query: 516 DRIKPPTTRPSVFHRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLK 570
           D IKP TTR SVF R+SM   +EENQC   T  + SAF+RLS+S SKK R ST  FDRLK
Sbjct: 631 DCIKPLTTRSSVFQRLSMATKKEENQCPTFTYAQTSAFKRLSISISKKHRPSTYTFDRLK 690

BLAST of Lag0041578 vs. NCBI nr
Match: KAA0033746.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 511.5 bits (1316), Expect = 1.6e-140
Identity = 308/654 (47.09%), Postives = 381/654 (58.26%), Query Frame = 0

Query: 36  EPDSDVVTVMMTGTRTMEERM-----SQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPK 95
           +P    V+V     + +++ +     +QYGGP Q S +YSK YTKRIDNLR P+GYQPPK
Sbjct: 151 QPQQQSVSVASLSVQQLQDMIANSIRAQYGGPPQTSFMYSKSYTKRIDNLRMPLGYQPPK 210

Query: 96  FQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPESLDSWEE 155
           FQQFDGKGNPKQHIAHFVETCENAG+RGD LV+QFVR+LKGNAF+WYTDLEPE       
Sbjct: 211 FQQFDGKGNPKQHIAHFVETCENAGSRGDQLVRQFVRSLKGNAFEWYTDLEPE------- 270

Query: 156 LEREFLNRFYSTRRTVSMFELTNTKQRKGELVVNYINRWRVMSLDCKDRLTELSSVEMCI 215
                                       GE V++YINRWR +SLDCKD+LTELS+VEMC 
Sbjct: 271 ----------------------------GEPVIDYINRWRALSLDCKDKLTELSAVEMCT 330

Query: 216 QGMHWELLYILKGIKPRTFEELATRAHDMELSIASQENQDLLLPNMRKEGRND------- 275
           QGMHWELLYIL+GIKPRTFEEL+TRAHDMELSIA+   +D L+   ++  +N+       
Sbjct: 331 QGMHWELLYILQGIKPRTFEELSTRAHDMELSIANIGAKDFLVQRTKRSDKNEINDTKKI 390

Query: 276 -EETIEESMVVNTTLPKSSSKEKRQTNGAHHFKG----------KTKKIYPFPDADIPDM 335
               + ESM+V  T  KS SK K +T    ++ G          + KK+YPFPD+D+ DM
Sbjct: 391 ANNILNESMLVQETPLKSFSKRK-ETKHERNYDGDEKRRPTLRERQKKVYPFPDSDVADM 450

Query: 336 LEQLLEAQLIKLPKCKRPEEMEKVDDPKYCKYHRVIDHQVERCFVLKDLILKLAMERKIE 395
           LEQL+E QLI+LP+CKRPE+  KVDDP YCKYHRVI H VE+CFVLK+LILKLA E KIE
Sbjct: 451 LEQLIEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLARENKIE 510

Query: 396 LDLDEVAQSN-------------------------------------------------- 455
           LD+DEVAQ+N                                                  
Sbjct: 511 LDIDEVAQTNHVAVNMTSSVLPSILLYDQRESLIQFGTFEPILVRFQQKTMTSNSQNKEE 570

Query: 456 ----------------------------------LATIKEKSKHQRKKDLKKLQPKRKRS 515
                                                I  K K +R K + K +P + + 
Sbjct: 571 TSEDEGEEWIGVTHKKERQIGSVQTNSNFHQKHSKGNISHKKKGRRNKKMWKPKPIKGKD 630

Query: 516 KKFSQPQQLVMLNKSFSKNFHKKEKKNFA------TSYCIDV-------EEVDNSKKSEQ 570
           K F QP++ + L +   ++F +   +         T+  ++V       EEVDNS + +Q
Sbjct: 631 KDFFQPRRSINLAEFLPRSFLEDHPEKILEVTACHTTSIVEVDNNYDSYEEVDNSNEIKQ 690

BLAST of Lag0041578 vs. NCBI nr
Match: KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 502.7 bits (1293), Expect = 7.6e-138
Identity = 246/344 (71.51%), Postives = 287/344 (83.43%), Query Frame = 0

Query: 57  SQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGKGNPKQHIAHFVETCENAGT 116
           +QYGGP Q   LYSKPYTKRIDN+R P GYQPPKFQQFDGKGNPKQH+AHF+ETCE AGT
Sbjct: 177 TQYGGPAQTFSLYSKPYTKRIDNMRMPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGT 236

Query: 117 RGDLLVKQFVRTLKGNAFDWYTDLEPESLDSWEELEREFLNRFYSTRRTVSMFELTNTKQ 176
           RGDLLVKQFVRTLKGNAFDWYTDLEPES+DSWE+LER+FLNRFYSTRR VSM ELT TKQ
Sbjct: 237 RGDLLVKQFVRTLKGNAFDWYTDLEPESIDSWEQLERDFLNRFYSTRRIVSMIELTATKQ 296

Query: 177 RKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQGMHWELLYILKGIKPRTFEELATRA 236
           RKGE V++YINRWR +SLDCKDRLTELS+VEMC QGMHW LLYIL+GIKPRTFEELATRA
Sbjct: 297 RKGEPVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRA 356

Query: 237 HDMELSIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTT----LPKSSSKEK 296
           HDMELSIA++ N DLL+P +RKE +  + T        +E+MVV+TT    + K    EK
Sbjct: 357 HDMELSIANRGNNDLLVPEVRKEKKEVKSTQKALKGVTKEAMVVSTTPLKLVSKEKKMEK 416

Query: 297 RQTNGAHH---FKGKTKKIYPFPDADIPDMLEQLLEAQLIKLPKCKRPEEMEKVDDPKYC 356
           RQ  G       K + +K+YPFPD+D+PDML+QLLE QLI+LP+CKRP EM +V+DP YC
Sbjct: 417 RQDEGEKRRPTLKERQEKVYPFPDSDLPDMLDQLLEKQLIQLPECKRPAEMGRVNDPNYC 476

Query: 357 KYHRVIDHQVERCFVLKDLILKLAMERKIELDLDEVAQSNLATI 387
           KYHRVI H VE+CFVLK+LILKLA+++KIEL+LD+VAQ+N A +
Sbjct: 477 KYHRVISHPVEKCFVLKELILKLALDKKIELELDDVAQTNHAAV 520

BLAST of Lag0041578 vs. ExPASy TrEMBL
Match: A0A5A7URH1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17350G00010 PE=4 SV=1)

HSP 1 Score: 599.0 bits (1543), Expect = 3.8e-167
Identity = 330/536 (61.57%), Postives = 394/536 (73.51%), Query Frame = 0

Query: 58  QYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGKGNPKQHIAHFVETCENAGTR 117
           QYGGP Q   LY KPYTKRIDNLR P GYQPPKFQQFDGKGNPKQH+AHF++TCE AGTR
Sbjct: 178 QYGGPAQTFSLYFKPYTKRIDNLRMPNGYQPPKFQQFDGKGNPKQHVAHFIKTCETAGTR 237

Query: 118 GDLLVKQFVRTLKGNAFDWYTDLEPESLDSWEELEREFLNRFYSTRRTVSMFELTNTKQR 177
           GDLLVKQFVRTLKGNA DWY DLEPES+D+WE+LER+FLNRFYSTR  VSM ELTNT+Q+
Sbjct: 238 GDLLVKQFVRTLKGNACDWYIDLEPESIDNWEQLERDFLNRFYSTRHIVSMMELTNTRQQ 297

Query: 178 KGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQGMHWELLYILKGIKPRTFEELATRAH 237
           KGELV++YINRWR +SLDCKDRLTELS+VEMC QGMHW LLYIL+GIKPRTFEELATRAH
Sbjct: 298 KGELVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAH 357

Query: 238 DMELSIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTTLPKSSSKEKRQTNG 297
           DMELSIA++  +D L+P  R +    ++T       I+ESMVV+ T  KS SK K     
Sbjct: 358 DMELSIANRGAKDFLIPKSRSDKNELDDTKKIANSVIKESMVVHATPLKSFSKRKETKIE 417

Query: 298 AHH---------FKGKTKKIYPFPDADIPDMLEQLLEAQLIKLPKCKRPEEMEKVDDPKY 357
             H          K + +K+YPFPD+D+ DMLEQLLE QLI+LP+CKRPE+  KVDDP Y
Sbjct: 418 RKHDGDEKRQSTLKERQEKVYPFPDSDVADMLEQLLENQLIQLPECKRPEQAGKVDDPNY 477

Query: 358 CKYHRVIDHQVERCFVLKDLILKLAMERKIELDLDEVAQSNLATIKEKSKHQRKKDLKKL 417
           CKYHRVI H VE+CFVLK+LILKLA E+KIELD+DEVAQ+N A I+  S   + KD   L
Sbjct: 478 CKYHRVISHPVEKCFVLKELILKLAREKKIELDIDEVAQTNHA-IEMTSNPIKGKDEDFL 537

Query: 418 QPKRK--------RSKKFSQPQQLVMLNKSFSKNFHKKEKKNFATSYCIDVEEVDNSKKS 477
           Q +R         RS     P++++ +    + +  + +  N+ +S     +EV+NS + 
Sbjct: 538 QLRRSITLAEFLPRSFLEDDPEEILEVTACHAASIVEVD-NNYGSS-----KEVNNSNEI 597

Query: 478 EQRTSVFDRIKPPTTRPSVFHRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSST 537
            QRTSVFDRIKP TTR SVF R+S+   EEENQC     TR S  +RLS+ST KK R ST
Sbjct: 598 NQRTSVFDRIKPSTTRSSVFQRLSVATKEEENQCPTFIYTRTSTSKRLSISTLKKDRPST 657

Query: 538 SVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL 570
           S FDRLK+TNDQ +R+M + + K F E N D K+HS +PSRMKRK  V INTEGSL
Sbjct: 658 SSFDRLKMTNDQQQREMKSSKAKPFREENDDDKIHSCVPSRMKRKLFVDINTEGSL 706

BLAST of Lag0041578 vs. ExPASy TrEMBL
Match: A0A5D3BX77 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00570 PE=4 SV=1)

HSP 1 Score: 580.5 bits (1495), Expect = 1.4e-161
Identity = 338/626 (53.99%), Postives = 403/626 (64.38%), Query Frame = 0

Query: 57  SQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGKGNPKQHIAHFVETCENAGT 116
           +QYGGP Q   LYSKPYTKRIDNLR P GYQPPKFQQFDGKGNPKQH+AHF+ETCE AGT
Sbjct: 177 TQYGGPAQTFSLYSKPYTKRIDNLRMPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGT 236

Query: 117 RGDLLVKQFVRTLKGNAFDWYTDLEPESLDSWEELEREFLNRFYSTRRTVSMFELTNTKQ 176
           RGDLLVKQFVRTLKGNAFD Y DLEPES+D+WE+LER+FLNRFYSTRR VSM ELTNT+Q
Sbjct: 237 RGDLLVKQFVRTLKGNAFDLYMDLEPESIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQ 296

Query: 177 RKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQGMHWELLYILKGIKPRTFEELATRA 236
           +KGELV++YINRWR +SLDCKDRLTELS+VEMC QGMHW LLYIL+GIKPRTFEELATRA
Sbjct: 297 QKGELVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRA 356

Query: 237 HDMELSIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTTLPKSSSKEKRQTN 296
           HDMELSI ++  +D L+P  R +     +T       I+ESMVV+ T  KS SK K    
Sbjct: 357 HDMELSIPNRGAKDFLIPKSRSDKNELNDTKKIANSVIKESMVVHATPLKSFSKRKETKI 416

Query: 297 GAHH---------FKGKTKKIYPFPDADIPDMLEQLLEAQLIKLPKCKRPEEMEKVDDPK 356
              H          K + +K+YPF D+D+ DMLEQLLE QLI+LPKCKRP++ EKVDDP 
Sbjct: 417 ERKHDGDEKRQSTLKERQEKVYPFSDSDVADMLEQLLENQLIQLPKCKRPKQAEKVDDPN 476

Query: 357 YCKYHRVIDHQVERCFVLKDLILKLAMERKIELDLDEVAQSN------------------ 416
           YCKYHRVI H VE+CFVLK+LILKLA E+KIEL++DEVAQ+N                  
Sbjct: 477 YCKYHRVISHPVEKCFVLKELILKLAREKKIELNIDEVAQTNHVAIEMTSNVPPLTQLDD 536

Query: 417 -----------------LATIKEKSKHQRKKD----------LKKLQP------------ 476
                            + TI  ++K    KD           K  QP            
Sbjct: 537 QRKSLIQFGTSILFQQRIVTINSQNKEAHGKDDDEGWITVTRQKGRQPNSIQKESQFHQK 596

Query: 477 ----------KRKRSKK-------------FSQPQQLVMLNKSFSKNF---HKKEKKNFA 536
                     K +R+KK             F Q ++ + L +   ++F   H +E     
Sbjct: 597 YAKGSISHKKKGRRNKKMWNPKPIKGKDEDFLQLRRSITLAEFLPRSFLEDHPEEILEVT 656

Query: 537 TSYCIDVEEVDNSKKS----------EQRTSVFDRIKPPTTRPSVFHRMSMVATEEENQC 574
           T +   + EV+N+  S           QRTSVFDRIKP TTR SVF R+SM   EEENQC
Sbjct: 657 TCHAASIVEVNNNYGSSKEVNNLNEINQRTSVFDRIKPSTTRSSVFQRLSMATKEEENQC 716

BLAST of Lag0041578 vs. ExPASy TrEMBL
Match: A0A5A7SRE2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold452G00210 PE=4 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 1.0e-143
Identity = 310/589 (52.63%), Postives = 383/589 (65.03%), Query Frame = 0

Query: 36  EPDSDVVTVMMTGTRTMEERM-----SQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPK 95
           +P    V+V     + +++ +     +QYGGP Q S +YSKPYTKRIDNLR P+GYQP K
Sbjct: 151 QPQQQSVSVASLSVQQLQDMIANSIRAQYGGPPQTSFMYSKPYTKRIDNLRMPLGYQPLK 210

Query: 96  FQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPESLDSWEE 155
           FQQFDGKGNPKQHI HFVETCENAG+RGD LV+QFVR+LKGNAF+               
Sbjct: 211 FQQFDGKGNPKQHIVHFVETCENAGSRGDQLVRQFVRSLKGNAFE--------------- 270

Query: 156 LEREFLNRFYSTRRTVSMFELTNTKQRKGELVVNYINRWRVMSLDCKDRLTELSSVEMCI 215
                      TRR VSM ELTNT QRKGE V++YINRWR +SLDCKD+LTELS+VEMC 
Sbjct: 271 ----------CTRRVVSMMELTNT-QRKGEPVIDYINRWRALSLDCKDKLTELSAVEMCT 330

Query: 216 QGMHWELLYILKGIKPRTFEELATRAHDMELSIASQENQDLLLPNMRKEGRNDEET---- 275
           QGMHWELLYIL+GIKPRTFEELATRAHDM+LSIA++  +D L+   R +     +T    
Sbjct: 331 QGMHWELLYILQGIKPRTFEELATRAHDMKLSIANRGVKDFLVQRTRSDKNEINDTKKIA 390

Query: 276 ---IEESMVVNTTLPKSSSKEKRQTNGAHH---------FKGKTKKIYPFPDADIPDMLE 335
              + ESM+V  T  KS SK K   +  +H          + + KK+YPFPD+D+ DMLE
Sbjct: 391 NNVLNESMLVQETPLKSFSKRKETKHKRNHDGDEKRRPTLRERQKKVYPFPDSDVADMLE 450

Query: 336 QLLEAQLIKLPKCKRPEEMEKVDDPKYCKYHRVIDHQVERCFVLKDLILKLAMERKIELD 395
           QL+E QLI+LP+CKRPE++ KVDDP YCKYHRVI H VE+CFVLK+LI KLA E KIELD
Sbjct: 451 QLIEKQLIQLPECKRPEQVGKVDDPNYCKYHRVISHLVEKCFVLKELIRKLARENKIELD 510

Query: 396 LDEVAQSNLATIKEKSK--------HQRKK---------DLKKLQPK--RKRSKKFSQPQ 455
           +DEVAQ+N   +   S          QRK           L + Q K     S+   +P 
Sbjct: 511 IDEVAQTNHVAVNMTSSVPLSILLYDQRKSLIQFGTFEPILVRFQQKTMTSNSQNKEEPS 570

Query: 456 Q------LVMLNKSFSKNFHKK--EKKNFATSYCIDV-------EEVDNSKKSEQRTSVF 515
           +      +  L +SF ++  ++  E     T+  ++V       EE+DNS + +QRTSVF
Sbjct: 571 EDEGEEWIEFLPRSFLEDHPEEILEVTACHTTSIVEVDNNYDSYEEMDNSNEIKQRTSVF 630

Query: 516 DRIKPPTTRPSVFHRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLK 570
           D IKP TTR SVF R+SM   +EENQC   T  + SAF+RLS+S SKK R ST  FDRLK
Sbjct: 631 DCIKPLTTRSSVFQRLSMATKKEENQCPTFTYAQTSAFKRLSISISKKHRPSTYTFDRLK 690

BLAST of Lag0041578 vs. ExPASy TrEMBL
Match: A0A5A7SUW1 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G002250 PE=4 SV=1)

HSP 1 Score: 511.5 bits (1316), Expect = 8.0e-141
Identity = 308/654 (47.09%), Postives = 381/654 (58.26%), Query Frame = 0

Query: 36  EPDSDVVTVMMTGTRTMEERM-----SQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPK 95
           +P    V+V     + +++ +     +QYGGP Q S +YSK YTKRIDNLR P+GYQPPK
Sbjct: 151 QPQQQSVSVASLSVQQLQDMIANSIRAQYGGPPQTSFMYSKSYTKRIDNLRMPLGYQPPK 210

Query: 96  FQQFDGKGNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPESLDSWEE 155
           FQQFDGKGNPKQHIAHFVETCENAG+RGD LV+QFVR+LKGNAF+WYTDLEPE       
Sbjct: 211 FQQFDGKGNPKQHIAHFVETCENAGSRGDQLVRQFVRSLKGNAFEWYTDLEPE------- 270

Query: 156 LEREFLNRFYSTRRTVSMFELTNTKQRKGELVVNYINRWRVMSLDCKDRLTELSSVEMCI 215
                                       GE V++YINRWR +SLDCKD+LTELS+VEMC 
Sbjct: 271 ----------------------------GEPVIDYINRWRALSLDCKDKLTELSAVEMCT 330

Query: 216 QGMHWELLYILKGIKPRTFEELATRAHDMELSIASQENQDLLLPNMRKEGRND------- 275
           QGMHWELLYIL+GIKPRTFEEL+TRAHDMELSIA+   +D L+   ++  +N+       
Sbjct: 331 QGMHWELLYILQGIKPRTFEELSTRAHDMELSIANIGAKDFLVQRTKRSDKNEINDTKKI 390

Query: 276 -EETIEESMVVNTTLPKSSSKEKRQTNGAHHFKG----------KTKKIYPFPDADIPDM 335
               + ESM+V  T  KS SK K +T    ++ G          + KK+YPFPD+D+ DM
Sbjct: 391 ANNILNESMLVQETPLKSFSKRK-ETKHERNYDGDEKRRPTLRERQKKVYPFPDSDVADM 450

Query: 336 LEQLLEAQLIKLPKCKRPEEMEKVDDPKYCKYHRVIDHQVERCFVLKDLILKLAMERKIE 395
           LEQL+E QLI+LP+CKRPE+  KVDDP YCKYHRVI H VE+CFVLK+LILKLA E KIE
Sbjct: 451 LEQLIEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLARENKIE 510

Query: 396 LDLDEVAQSN-------------------------------------------------- 455
           LD+DEVAQ+N                                                  
Sbjct: 511 LDIDEVAQTNHVAVNMTSSVLPSILLYDQRESLIQFGTFEPILVRFQQKTMTSNSQNKEE 570

Query: 456 ----------------------------------LATIKEKSKHQRKKDLKKLQPKRKRS 515
                                                I  K K +R K + K +P + + 
Sbjct: 571 TSEDEGEEWIGVTHKKERQIGSVQTNSNFHQKHSKGNISHKKKGRRNKKMWKPKPIKGKD 630

Query: 516 KKFSQPQQLVMLNKSFSKNFHKKEKKNFA------TSYCIDV-------EEVDNSKKSEQ 570
           K F QP++ + L +   ++F +   +         T+  ++V       EEVDNS + +Q
Sbjct: 631 KDFFQPRRSINLAEFLPRSFLEDHPEKILEVTACHTTSIVEVDNNYDSYEEVDNSNEIKQ 690

BLAST of Lag0041578 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 502.7 bits (1293), Expect = 3.7e-138
Identity = 246/344 (71.51%), Postives = 287/344 (83.43%), Query Frame = 0

Query: 57  SQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGKGNPKQHIAHFVETCENAGT 116
           +QYGGP Q   LYSKPYTKRIDN+R P GYQPPKFQQFDGKGNPKQH+AHF+ETCE AGT
Sbjct: 177 TQYGGPAQTFSLYSKPYTKRIDNMRMPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGT 236

Query: 117 RGDLLVKQFVRTLKGNAFDWYTDLEPESLDSWEELEREFLNRFYSTRRTVSMFELTNTKQ 176
           RGDLLVKQFVRTLKGNAFDWYTDLEPES+DSWE+LER+FLNRFYSTRR VSM ELT TKQ
Sbjct: 237 RGDLLVKQFVRTLKGNAFDWYTDLEPESIDSWEQLERDFLNRFYSTRRIVSMIELTATKQ 296

Query: 177 RKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQGMHWELLYILKGIKPRTFEELATRA 236
           RKGE V++YINRWR +SLDCKDRLTELS+VEMC QGMHW LLYIL+GIKPRTFEELATRA
Sbjct: 297 RKGEPVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRA 356

Query: 237 HDMELSIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTT----LPKSSSKEK 296
           HDMELSIA++ N DLL+P +RKE +  + T        +E+MVV+TT    + K    EK
Sbjct: 357 HDMELSIANRGNNDLLVPEVRKEKKEVKSTQKALKGVTKEAMVVSTTPLKLVSKEKKMEK 416

Query: 297 RQTNGAHH---FKGKTKKIYPFPDADIPDMLEQLLEAQLIKLPKCKRPEEMEKVDDPKYC 356
           RQ  G       K + +K+YPFPD+D+PDML+QLLE QLI+LP+CKRP EM +V+DP YC
Sbjct: 417 RQDEGEKRRPTLKERQEKVYPFPDSDLPDMLDQLLEKQLIQLPECKRPAEMGRVNDPNYC 476

Query: 357 KYHRVIDHQVERCFVLKDLILKLAMERKIELDLDEVAQSNLATI 387
           KYHRVI H VE+CFVLK+LILKLA+++KIEL+LD+VAQ+N A +
Sbjct: 477 KYHRVISHPVEKCFVLKELILKLALDKKIELELDDVAQTNHAAV 520

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0056121.17.8e-16761.57ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK03695.12.9e-16153.99retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0032121.12.1e-14352.63ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0033746.11.6e-14047.09retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0047477.17.6e-13871.51uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa][more]

Pages

Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7URH13.8e-16761.57Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3BX771.4e-16153.99Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7SRE21.0e-14352.63Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7SUW18.0e-14147.09Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5A7TZU93.7e-13871.51Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940... [more]

Pages

Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 125..214
e-value: 2.7E-9
score: 37.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 891..931
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 392..411
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 386..413
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 483..504
NoneNo IPR availablePANTHERPTHR33437OS06G0361200 PROTEINcoord: 87..473

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0041578.1Lag0041578.1mRNA