Lag0041570 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0041570
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr13: 20809122 .. 20809439 (-)
RNA-Seq ExpressionLag0041570
SyntenyLag0041570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGCTAATCAGAGACGAAAAACCAATAGAATCAAGGGTCTATATGATGATGATGGAGAATGGACTTCCAGAGAGGAAGATTTGGCTCGATTGGCCAATGAGTATTTCCGGAGTCTATTTACTTCTTCCAATCCAAATCAGGAGCCCATGGAGAAGATTCTGGAGGCAATTCCTCATCGAGTCCAAGACAGACAAAATGATGTCCTCATGCGCAGGTTTTCTAGGGAAGAGGTTAATGTGGTGATCAAAAGTATGCAGCCAACCAAAGCGCCATGTTCGGATGGGATGCAAGCGGTGTTTGACCAGAAATACTGA

mRNA sequence

ATGAAGGCTAATCAGAGACGAAAAACCAATAGAATCAAGGGTCTATATGATGATGATGGAGAATGGACTTCCAGAGAGGAAGATTTGGCTCGATTGGCCAATGAGTATTTCCGGAGTCTATTTACTTCTTCCAATCCAAATCAGGAGCCCATGGAGAAGATTCTGGAGGCAATTCCTCATCGAGTCCAAGACAGACAAAATGATGTCCTCATGCGCAGGTTTTCTAGGGAAGAGGTTAATGTGGTGATCAAAAGTATGCAGCCAACCAAAGCGCCATGTTCGGATGGGATGCAAGCGGTGTTTGACCAGAAATACTGA

Coding sequence (CDS)

ATGAAGGCTAATCAGAGACGAAAAACCAATAGAATCAAGGGTCTATATGATGATGATGGAGAATGGACTTCCAGAGAGGAAGATTTGGCTCGATTGGCCAATGAGTATTTCCGGAGTCTATTTACTTCTTCCAATCCAAATCAGGAGCCCATGGAGAAGATTCTGGAGGCAATTCCTCATCGAGTCCAAGACAGACAAAATGATGTCCTCATGCGCAGGTTTTCTAGGGAAGAGGTTAATGTGGTGATCAAAAGTATGCAGCCAACCAAAGCGCCATGTTCGGATGGGATGCAAGCGGTGTTTGACCAGAAATACTGA

Protein sequence

MKANQRRKTNRIKGLYDDDGEWTSREEDLARLANEYFRSLFTSSNPNQEPMEKILEAIPHRVQDRQNDVLMRRFSREEVNVVIKSMQPTKAPCSDGMQAVFDQKY
Homology
BLAST of Lag0041570 vs. NCBI nr
Match: XP_010686122.1 (PREDICTED: uncharacterized protein LOC104900404 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 108.2 bits (269), Expect = 4.3e-20
Identity = 48/104 (46.15%), Postives = 74/104 (71.15%), Query Frame = 0

Query: 2   KANQRRKTNRIKGLYDDDGEWTSREEDLARLANEYFRSLFTSSNPNQEPMEKILEAIPHR 61
           KA+QR+K NRIKGL+D+ GEW   EE+L RL  +YFR +FTSS+P+   M+++L+ +   
Sbjct: 551 KASQRKKRNRIKGLFDEHGEWREEEEELERLVQKYFREIFTSSDPSTGAMDEVLQFVKKS 610

Query: 62  VQDRQNDVLMRRFSREEVNVVIKSMQPTKAPCSDGMQAVFDQKY 106
           V    ND+L++ +S+EE++  +K M P KAP  DG+ A+F Q++
Sbjct: 611 VTTEFNDILLKPYSKEEIHEALKQMHPCKAPGPDGLHAIFYQRF 654

BLAST of Lag0041570 vs. NCBI nr
Match: XP_023878301.1 (uncharacterized protein LOC111990748 [Quercus suber])

HSP 1 Score: 101.3 bits (251), Expect = 5.3e-18
Identity = 48/104 (46.15%), Postives = 73/104 (70.19%), Query Frame = 0

Query: 2   KANQRRKTNRIKGLYDDDGEWTSREEDLARLANEYFRSLFTSSNPNQEPMEKILEAIPHR 61
           +A++RRK N I G++D+ G W   EE +A+ A  YF ++++SS+P+Q  +E++ EAIP +
Sbjct: 322 QASERRKQNTIVGIWDEQGRWCDNEESIAQAAISYFNNIYSSSHPSQ--IEEVTEAIPFK 381

Query: 62  VQDRQNDVLMRRFSREEVNVVIKSMQPTKAPCSDGMQAVFDQKY 106
           V +  N+ L+R F++EEV V +K + P KAP  DGM AVF QKY
Sbjct: 382 VTEEMNESLIREFTKEEVAVALKQIHPNKAPGPDGMSAVFFQKY 423

BLAST of Lag0041570 vs. NCBI nr
Match: XP_030939839.1 (uncharacterized protein LOC115964720 [Quercus lobata])

HSP 1 Score: 93.6 bits (231), Expect = 1.1e-15
Identity = 45/104 (43.27%), Postives = 67/104 (64.42%), Query Frame = 0

Query: 2   KANQRRKTNRIKGLYDDDGEWTSREEDLARLANEYFRSLFTSSNPNQEPMEKILEAIPHR 61
           +A++R+K N I GL+DD+G W    + +A +A  YFR+++TSS P     + +  AIP R
Sbjct: 256 RASERKKKNTILGLWDDNGTWYDTNDTIAEVAVRYFRNIYTSSQP--ASFDDVTAAIPTR 315

Query: 62  VQDRQNDVLMRRFSREEVNVVIKSMQPTKAPCSDGMQAVFDQKY 106
           V D  N  L++ FS++E+ + +K M PTKAP  DGM A+F  KY
Sbjct: 316 VTDEMNRGLIKEFSKDEILIALKQMHPTKAPGPDGMSAIFFHKY 357

BLAST of Lag0041570 vs. NCBI nr
Match: XP_021736509.1 (uncharacterized protein LOC110703057 [Chenopodium quinoa])

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-15
Identity = 45/104 (43.27%), Postives = 65/104 (62.50%), Query Frame = 0

Query: 2   KANQRRKTNRIKGLYDDDGEWTSREEDLARLANEYFRSLFTSSNPNQEPMEKILEAIPHR 61
           KA+QRRK N I+GLYD DG W   +E    + +  + +LFTS+NP  E  +K+L+ +   
Sbjct: 645 KASQRRKRNTIEGLYDSDGVWQEDDELFENIVSGLYTNLFTSTNPTNEQTDKVLQHVKPI 704

Query: 62  VQDRQNDVLMRRFSREEVNVVIKSMQPTKAPCSDGMQAVFDQKY 106
           + D  N  L+R +++EEV   +K M P KAP  DGM A+F QK+
Sbjct: 705 ILDSNNAALLRPYTKEEVYDALKQMHPCKAPGPDGMHAIFYQKF 748

BLAST of Lag0041570 vs. NCBI nr
Match: XP_023906330.1 (uncharacterized protein LOC112018052 [Quercus suber])

HSP 1 Score: 92.4 bits (228), Expect = 2.4e-15
Identity = 43/104 (41.35%), Postives = 67/104 (64.42%), Query Frame = 0

Query: 2   KANQRRKTNRIKGLYDDDGEWTSREEDLARLANEYFRSLFTSSNPNQEPMEKILEAIPHR 61
           +A QR++ N+I G+++  GEW + E+ +A +A EYF+SLFTSS P  + + ++LEA+  R
Sbjct: 471 RATQRKRRNQIVGVFNTVGEWCTDEDQIADIAVEYFQSLFTSSQPEDDDVSRVLEAVDRR 530

Query: 62  VQDRQNDVLMRRFSREEVNVVIKSMQPTKAPCSDGMQAVFDQKY 106
           V D  N  L+  ++ EE+   +  M P+KAP  DGM   F QK+
Sbjct: 531 VTDEMNGTLLEPYTGEEIRQALFQMHPSKAPGPDGMSPFFFQKF 574

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_010686122.14.3e-2046.15PREDICTED: uncharacterized protein LOC104900404 [Beta vulgaris subsp. vulgaris][more]
XP_023878301.15.3e-1846.15uncharacterized protein LOC111990748 [Quercus suber][more]
XP_030939839.11.1e-1543.27uncharacterized protein LOC115964720 [Quercus lobata][more]
XP_021736509.11.9e-1543.27uncharacterized protein LOC110703057 [Chenopodium quinoa][more]
XP_023906330.12.4e-1541.35uncharacterized protein LOC112018052 [Quercus suber][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19446REVERSE TRANSCRIPTASEScoord: 2..104
NoneNo IPR availablePANTHERPTHR19446:SF440SUBFAMILY NOT NAMEDcoord: 2..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0041570.1Lag0041570.1mRNA